BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66670.1
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951571 jgi|Araly1|951571|scaffold_803458.1 1989 0.0
> Ahg951571 jgi|Araly1|951571|scaffold_803458.1
Length=1274
Score = 1989 bits (1077), Expect = 0.0
Identities = 1205/1267 (95%), Gaps = 7/1267 (1%)
Strand=Plus/Plus
Query 53 TTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCGGAGCTCATAAAAGGA 112
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TTAGCTCCACCAGTAATATCAATGGTGTTCTGTGGATTATTTTCGGAGCTCACGAAAGGA 60
Query 113 CACTCCAGTTCTAACAACAACGGAACTAACGTTTCACTGGCTAAAACGATCCAAACAAAT 172
|||||||| |||||| ||||||||| ||| ||||| |||||||| | |||||||||||
Sbjct 61 AACTCCAGTCCTAACAGCAACGGAACCAACACTTCACCGGCTAAAAGGGTCCAAACAAAT 120
Query 173 ATTCGGTCCCAATACTCATCAGACCTGAGTTCTTACGCATCCGCTTGTAAAAAATACTCA 232
|| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 ATGCGGTCCCTATACTCATCAGACCTGAGTTCTTACACATCCGCTTGTAAAAAATACTCT 180
Query 233 TCCCTCAAATCTTTTGATTCATTGCTTCACGAGCGAACAAACAGCATCATCAGCTCGCTC 292
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 181 TCCCTCAAATCTTTTGATTCATCGCTTCACGAGCGAACCAACAGCATCATCAGCTCGCTC 240
Query 293 GCTGCTCAGGCCAAGACTCGATCTTTAAACATAGAGTCACTCATGGAGGTCTACGGATAT 352
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 241 GCTGCTCAGGCCAAGACTCAATCTTTAAACCTAGAGTCACTCATGGAGGTCTACGGATAT 300
Query 353 CTTCTTGAACTAAACCAAGATACAGTAAGAGTCATCATTGAAAGCAAAGAAGATGTTTTG 412
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CTTCTTGAACTAAACCAAGATACAGTAAGAGTCATCATTGAAAGCAAAGAAGACGTTTTG 360
Query 413 AAGAACAATGATCTCAAGGCTTTGGTTGATGTCTATTTCAAAAGTACCTCTAAGACCTTG 472
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 AAGAACAATGATCTTAAGGCTTTGGTTGATGTCTATTTCAAAAGTACCTCCAAGACCTTA 420
Query 473 GACTTCTGCAATACCGTCGAGAAATGCGTCAAGAAAGCAGAAATAAGCCAGCTTATCATT 532
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GACTTCTGCAATACCGTCGAGAAATGCGTCAAGAAAGCAGAAATAAGCCAACTTATCATT 480
Query 533 CGATTCGCGGTGAAACAGTTTGAGACAGAAACGGTGGATACGGATCTTGGAGAGAGTAAG 592
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 481 CGATTCGCGGTGAAACAGTTCGAGACAGAAACGGTGGACACGGATCTTGGAGAAAGTAAG 540
Query 593 AAGAAGAAGTATGTGAAAACCTTGGAGGAGATGAACAAGTTTAAAGCCATGGGAGACCCT 652
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 AAGAAGAAGTATGTAAAAACCTTGGAGGAGCTGAACAAGTTTAAAGCCATGGGAGACCCT 600
Query 653 TTTGATGGCGAGTTCGTGACTCAGTACAAGTCTGTCTACGATG-AGCAGGTTTTGCTTCT 711
|| ||||||||||||||||| |||||| |||| || ||||| | ||||| ||||||||||
Sbjct 601 TTCGATGGCGAGTTCGTGACGCAGTACGAGTCCGTATACGA-GCAGCAGATTTTGCTTCT 659
Query 712 GGACGAGTTGCGTAAGCTGAAAGTAAAGCTTGGTAAGAAACTGAGGAATATAAAGACATG 771
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 GGACGAGTTGCGTAAGCTGAAAGTAAAGCTTGGTAAGAAACAGAGGAATATAAAGACATG 719
Query 772 GAGGATATTGTCAAATGTGGTTTTCGCCACTGCGTTTGTGACTGTATTTGTCTTATCGGT 831
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 GAGGATATTGTCAAATGTGGTTTTCGTGACTGCGTTTGTGACTGTATTTGTCTTATCGGT 779
Query 832 GGTTGCGGCAGCAATGATGGCACCTCCGGTATTGAGTGCGGTTGCGTCTGGATTGACCAC 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGTTGCGGCAGCAATGATGGCACCTCCGGTATTGAGTGCGGTTGCGTCTGGATTGACCAC 839
Query 892 ACCGATTGAGGTTGTGGGAATGTGGTGTAACAAGATGTGGAAAGAGTATGAGAAAGCTGT 951
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 840 ACCGATTGAGGTTGTGGGAATATGGTGTAACAAGATGTGGAAGGAGTACGAGAAAGCTGT 899
Query 952 GAAGAGACAGAGAGGTTTGGTTTTAACAATGGAACTTGGGGTGCAAGCAAACAATGTAAC 1011
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 900 GAAGAGACAGAGAGGTTTGGTTTTAACAATGGAGCTTGGGGTGCAAGCTAACAATGTAAC 959
Query 1012 GATGGTAAATATAAAATTCGAAGTTGAAAACCTGAGCATAAGGATCTCATCGATTCTGAA 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATGGTAAATATAAAATTCGAAGTTGAAAACCTGAGCATAAGGATCTCATCGATTCTGAA 1019
Query 1072 GACCGT-GAACTTTGCTGTGGACAGAGAAGAAAATGAAATGGCGACGAGATTTGCGATGC 1130
|||||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1020 GACCGTAGA-CTTTGCTGTGGAGAGAGAAGAAAATGAAATGGCCACGAGATTTGCGATGC 1078
Query 1131 AAGAAATAAAGAAGAAAGTAGAAGGGTTTACTGAAAAAATCGAGGAAGTTGGTGAAAGAG 1190
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 AAGAAATCAAGAAGAAAGTAGAAGGGTTTACTGAAAAAATCGAGGAAGTTGGAGAAAGAG 1138
Query 1191 CGGCTAATTGTAGCAAACTCATCGCGTTGGGGAGACTTGTAGTTCTGGGACACATCCTTG 1250
| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CAGCCAAGTGTAGCAAACTCATCGCGTTGGGGAGACTTGTAGTTCTGGGACACATCCTTA 1198
Query 1251 GTTTACACATCGTAGAAGGAGGAGCTGCAAATA---TTATCAGTAGCGTTTAAAAGACAT 1307
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1199 GTTTACAGATCGTAGAAGGAGGAGCTGCAAATACAATTATCAGTGGCGTTTAAAAGACAT 1258
Query 1308 TGACGTT 1314
||| |||
Sbjct 1259 TGATGTT 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56754465050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5