BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66675.1
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496934 jgi|Araly1|496934|fgenesh2_kg.8__2750__AT5G66675.1 2364 0.0
> Ahg496934 jgi|Araly1|496934|fgenesh2_kg.8__2750__AT5G66675.1
Length=1743
Score = 2364 bits (1280), Expect = 0.0
Identities = 1609/1756 (92%), Gaps = 69/1756 (4%)
Strand=Plus/Plus
Query 77 CCACAATCCATCCCTCTCCTTCACCACTCTCTCTTTGACTTTCAGAGTAACTAAGATTTC 136
|||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 45 CCACAATCAATCCCTCTCCTTCACCA----CTCTTTGACTCTCAGAGTAACTACGATTTC 100
Query 137 AGCTCAATCTCTTATCTCTTCCGGATCCTCATCGATTTT-CAGGTACTTACCGAT-CCGA 194
||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||| ||||
Sbjct 101 AGCTCAA--TCTTATCTCTTCCGGATCCACATCGATTTTCCAGGTACTTACTGATACCGA 158
Query 195 TCTCAGTTTTAGTTCCAGCCTCCCGCAACGAAAACTC-TGTCTTGATTCTCGCACTCTGC 253
||||| ||| | ||||||||||| ||||||||| ||| ||||||||||||| ||||||||
Sbjct 159 TCTCACTTTCAATTCCAGCCTCCTGCAACGAAAGCTCTTGTCTTGATTCTCTCACTCTGC 218
Query 254 TTCCTACAGACCAGATTTTTCTCA-A--ATCAAGTAAGATTTCTGTTTCTGTAGGTTCTT 310
|||||| |||||||||||| |||| | |||||||| |||||||||||||||||||||||
Sbjct 219 TTCCTATAGACCAGATTTTCCTCAGATCATCAAGTACGATTTCTGTTTCTGTAGGTTCTT 278
Query 311 CACTAGTTTTGTTTGGAAAGTGTGCTCAAAACACTGGTTCTGGATTCTATTTGTCATAAA 370
| ||||||||||| ||||||||||||| |||||||||||
Sbjct 279 --C--------------------GCTCAAAACACCGGTTCTGGATTCTGTTTGTCATAAA 316
Query 371 AGTCAACATCTTTT-TGGCTCTTATTAATCGTCCCTACCTGAGACAGTCCATGTTTCTTG 429
||| |||||||||| || ||| ||||||||| | |||||||||||||||||||||||
Sbjct 317 AGTGAACATCTTTTGGGGTTCTGATTAATCGT--C--CCTGAGACAGTCCATGTTTCTTG 372
Query 430 GAATGTTCTCCAAAACCATGGAAGACAAATCAAATTCCAGCAGGAACAGAACCAACAACA 489
|||| |||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 373 GAATCTTCTCCAAAACCATGGAAGACAAATCAAATTCCAGCAGGAACAG---C-AC-TC- 426
Query 490 CTCCACTTCCTCAACAGATCCGAACAGACATGGGTTCCTTATACTCTGCAGATCTTACTG 549
| |||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 427 CACCACCTCTTCAACAGATCCGAACCGACATGGGTTCCTTATACTCTGCAGATCTTACTG 486
Query 550 CTTACAATTCAGCCTGTAGAGAAGATCCAGATTTACAATCCTTCGATTCCTCTCTTCACC 609
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CTTACAAGTCAGCTTGTAGAGAAGATCCAGATTTACAATCCTTCGATTCCTCTCTTCACC 546
Query 610 AACGCACCAACCGGGTCATCAACTCGCTCGCCTCTGGTGCTC-AAACTCGGTCTTTATCC 668
||||||||||||| ||||||| |||||| ||||||||||| | |||||||||||||||||
Sbjct 547 AACGCACCAACCGAGTCATCAGCTCGCTAGCCTCTGGTGC-CGAAACTCGGTCTTTATCC 605
Query 669 TTTGACGCGCTCATTGAAGTCTCAGGGTGTCTTCTTGAAATGAACCAAGAAGTCGTTAGG 728
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 606 TTTGACGCCCTCATTGAAGTCTCAGGGTGTCTTCTCGAAATGAACCAAGAGGTCGTTAGG 665
Query 729 TTTATCATTGAAAGCAAAGAAGACGTC-TGGGACAACAAAGATTTGACATGTTTGGTCAA 787
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 666 TTTATCATTGAAAGCAAAGAAGATG-CGTGGGACAACAAAGATTTGACATGTTTGGTCAA 724
Query 788 TGCTTATTTTGATAGTAGCATCAAGACTTTAGATTTCTGCAATGCTGTTGATAACTGTGT 847
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 725 TGCGTATTTTGATAGTAGCATCAAGACCTTAGATTTCTGCAATGCTGTTGATAATTGTGT 784
Query 848 TAAACGCGCGAGGATAGGCCAAATGCTCTTACAGTTTGCGCTTAAGCAGTTTGAGATGGA 907
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 785 TAAACGTGCGAGGATAGGCCAAATGCTTTTACAGTTTGCGCTTAAGCAATTTGAGATGGA 844
Query 908 GTCATCAGGGAGCAACAAATCCGTGGAACCGGG---TACTAATAAGTACGCGAAAACTTT 964
||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 845 GTCATCAGGGAACAACAAATCCGTGGAGCCGGGTACTACTAATAAGTACGCCAAAACTTT 904
Query 965 GGAAGAGCTTAACAAGTTTAAGGCTTCTGGTGATCCGTTTGATGGAGATTTCTTCATGCT 1024
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 905 GGAAGAGCTTAACAAGTTTAAGGCTTCTGCTGATCCGTTTGATGGAGATTTCTTCATGTT 964
Query 1025 GCTTGAGTCTGTTTACGAGCAGCAGGTTATGCTTCTGGAGATACTTCATAAGCAAAAGAG 1084
| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GTTTGAGTCGGTATACGAGCAGCAGGTTATGCTTCTGGAGATACTTCATAAGCAAAAGAG 1024
Query 1085 GAAGCTTGATAAAAAGCTTAAGAACATAAAGTATTGGAAGAAAATCTCGAATGTGGTTTT 1144
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| ||
Sbjct 1025 GAAGCTTGATAAAAAGCTTAAGAACATAAAGCACTGGAAGAAAATCTCTAATGTGGTCTT 1084
Query 1145 TGTGACTGCGTTTGTCTCTGTTTTGATCTTCTCTGTTGTAGCAGCCGCTGTTGCTGCACC 1204
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1085 CGTGACTGCGTTTGTCTCTGTTTTGATCTTCTCTGTTGTAGCAGCCGCTGTGGCTGCACC 1144
Query 1205 GCCAGTTGTGACTGCGCTTGCAGCTGCGTTAGCGGTTCCAATTGGATCAATAGGGAAATG 1264
|||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||
Sbjct 1145 GCCAGTTGTGACTGCGGTTGCAGCTTCGTTAGCGGTTCCAGTTGGGTCAATAGGGAAATG 1204
Query 1265 GTGTAATCATCTTTGGAAGAAGTATGAAACGGCTGTGAAAGGACAGAAAGATATTGTTCT 1324
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1205 GTGTAATCATCTTTGGAATAAGTATGAAACGGCAGTGAAAGGACAGAAAGATATTGTTCT 1264
Query 1325 GTCGATGAGGATTGGTGCTTATGTTACCATGAAAGACATGGATAACATTCGAGTACATGT 1384
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |
Sbjct 1265 GTCGATGAGGATTGGTGCTTATGTCACCATGAAAGACATGGATAACATTCGAGTCCTTAT 1324
Query 1385 AGATAAGTTGAAGATTGAGATGGAATCGATGATGCAAAAGGTTGATTTTGCACTCAAGGA 1444
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1325 AGATAAGTTGAAGATTGAGATGGAATCGATGATGCAAAAGGTTGATTTTGCGCTCAAGGA 1384
Query 1445 GAAAGAAGAAGAAGTGGCTGTGAGGCTTTCGATGCACGAGATCAGCAAGAAGTTTGATGT 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GAAAGAAGAAGAAGTGGCTGTGAGGCTTTCGATGCACGAGATCAGCAAGAAGTTTGATGT 1444
Query 1505 TTTCACAGAGAGAATCGAGGAAGTGGGTGATAACGCGACTAAGTGTAGCAAAAATATCAC 1564
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1445 TTTCACAGAGAGAATCGAGGAAGTGGGTGAAAACGCGACTAAGTGTAGCAAAAATATCAC 1504
Query 1565 ATTGGCGAGAACAATCGTTCTGAGGCACATTCTTAGCTTCCCCTCAAGTTCAGATTCAGG 1624
||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 1505 ATTGGCGAGAACAATCGTTCTAAGGCACATTCTAAGTTTCCCCTCAAGTTCAGATTCAGA 1564
Query 1625 GCAAGGAAACTTGATTGAGGCTATCACATTGTGAGAGATAGATACATAGCATAAACTGGT 1684
||||||||||||||||||| ||||||||||||||| | |||| | | |
Sbjct 1565 GCAAGGAAACTTGATTGAGACTATCACATTGTGAG-G---GATA----G--------G-T 1607
Query 1685 GGTTTTTGAGAAGAGGTTCTGTGGTATGTCACATAACGCTTATATAATGTTATGTGTAAC 1744
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1608 GGTTATTGAGAAGAGGTTCTGTGGTATGTCACATAGCGCTTATATAATGTTATGTGTAGC 1667
Query 1745 AGCTCTTGTATACATCTGTATCTGTTTAGCACAGCATAATGTATTACTCAATTGGAAATA 1804
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1668 AGCTCTTGTATACATCTGTATCTGTTTAGCACAGCACAATGTATTACTCAATTGGAAATA 1727
Query 1805 AAATTCATAGTCTATA 1820
||||||| |||| |||
Sbjct 1728 AAATTCAAAGTCGATA 1743
Score = 78.7 bits (42), Expect = 1e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 15 GAAGACAAGTCAAAGATAGAAGAAGCAACTCAGTTGTTTCTCTCC 59
|||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 GAAGACAAGTCAAAGACAGAAGAAGCAACTCAGTTGTTTCTCTCC 45
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68600531245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5