BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66680.1
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951569 jgi|Araly1|951569|scaffold_803456.1 2285 0.0
> Ahg951569 jgi|Araly1|951569|scaffold_803456.1
Length=1354
Score = 2285 bits (1237), Expect = 0.0
Identities = 1311/1348 (97%), Gaps = 0/1348 (0%)
Strand=Plus/Plus
Query 68 AAAACCCTAGGAACCAAATATGGTGAACCTCTCGAGATCCGTCGCGTTGATCTCTGTATT 127
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2 AAAACCCTAGGAACCAAATATGATGAACCTCTCGAGATCCGTCGCGTTGATCTCTCTATT 61
Query 128 CCTCCTTCCTTTACTTAGCTTCTCTTTCTCCGTCGATAATCCGACGGATCGGCGTGTTCT 187
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 62 CCTTCTTCCTTTGCTTAGTTTCTCTTTCTCCGTCGATAATCCGACGGATCGGCGAGTTCT 121
Query 188 TGTTCTTCTCGATGATTTATCACTCAAATCCTCTCATTCTATCTTCTTCAACACTCTCAA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TGTTCTTCTCGATGATTTATCACTCAAATCCTCTCATTCTATCTTCTTCAACACTCTCAA 181
Query 248 GTCTCGTGGATTCGATCTCGATTTCAAGTTAGCTGAAGATTCGAAGCTTGCGCTTCAACG 307
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GTCTCGTGGATTTGATCTCGATTTCAAGTTAGCTGAAGATTCGAAGCTTGCGCTTCAACG 241
Query 308 ATACGGCCAGTACTTGTACGATGGGTTGATCATCTTCGCCCCATCAACAGAACGGTTTGG 367
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 242 ATATGGCCAGTACTTGTACGATGGGTTGATCATCTTCGCCCCATCCACAGAACGGCTTGG 301
Query 368 AGGATCCTTGGATTCGAAATCCATTGCTGATTTTGTTGATTCCGGTCGTGACTTGATCTT 427
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 302 AGGATCCTTGGATTCGAAATCCATTGCTGATTTCGTTGATTCCGGTCGTGACCTGATCTT 361
Query 428 ATCGGCGGATACTGCTGCATCTGATTTGATTAGGGGTATTGCCACAGAGTGTGGGGTTGA 487
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GTCGGCGGATACTTCTGCATCTGATTTGATTAGGGGTATTGCCACAGAGTGTGGGGTTGA 421
Query 488 TTTCGATGAGGATTCTTCAGCTATGGTTATTGATCATACTAGCTTCTCCGTCTCTGATGT 547
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TTTTGATGAGGATTCTTCAGCTATGGTTATTGATCATACTAGCTTCTCCGTCTCTGATGT 481
Query 548 TGACGGCGACCACACCTTGATTGCTGCCGACGATTTAGTGAAATCCGATGTCATTTTGGG 607
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 482 TGACGGCGACCACACCTTGATTGCTGCCGACGATTTTGTTAAATCCGATGTCATTTTAGG 541
Query 608 AAAAACCAAGATTGAGGCTCCCGTGCTCTTCAGAGGAGTTGCACATTCGTTGAACCCTAC 667
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 542 AAAAACCAAGATTGAGGCCCCCGTCCTCTTCAGAGGAGTTGCACATTCGTTGAACCCTAC 601
Query 668 TAACAATCTGGTTTTGAAAGTTCTTTCAGCCTCTCCATCAGCTTATTCTGCTAACCCAAG 727
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 602 CAACAATCTGGTTTTGAAAGTTCTTTCAGCCTCTCCCTCGGCTTATTCTGCTAACCCAAG 661
Query 728 CTCGAAGTTGTCTAGTcccccccAGCTCACTGGGTCTTCAATTTCGCTAGTCTCGGTCAT 787
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 662 CTCGAAGTTGTCTAGTCCCCCCCAGCTCACTGGGTCTGCAATTTCGCTAGTCTCTGTCAT 721
Query 788 GCAGGCCAGGAACAATGCTAGGGTTGTGATCTCAGGCTCAGTGCAGTTGTTTAGCGATAG 847
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 722 GCAGGCCAGGAACAATGCTAGGGTTGTGATCTCAGGCTCTTTGCAGTTGTTTAGCGATAG 781
Query 848 GTTAATCAGATCTGGTGTCCAGAAAGCAGGGAGTCCGAACCAATACGAAAAATCTGGCAA 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GTTAATCAGATCTGGTGTCCAGAAAGCAGGGAGTCCGAACCAATACGAAAAATCTGGCAA 841
Query 908 CGAACAGTTTGTGACTGAACTAAGCAAATGGGTCTTCCACGAAAGGGGCCATCTGAAGGC 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CGAACAGTTTGTGACTGAACTAAGCAAATGGGTCTTCCACGAAAGGGGCCATCTGAAGGC 901
Query 968 TGGTAATCTTGTACACCATAGGGTTGGAGAAACAGATGAGCCAGCTATATATAGGATAAA 1027
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 902 TGGTAGTCTTGTACACCATAGGGTTGGAGAAACAGATGAGCCAGCAATATATAGGATAAA 961
Query 1028 GGATGACCTGGAATTTTCTGTAGAGATATATGAGTGGTCAGGAAAGAGCTGGGAGCCGTA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GGATGACCTGGAATTTTCTGTAGAGATATATGAGTGGTCAGGAAAGAGCTGGGAGCCGTA 1021
Query 1088 TGTTGCTAACGATGTGCAGGTTCAGTTTTACATGATGAGCCCGTATGTGTTGAAAACCCT 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGTTGCTAACGATGTGCAGGTTCAGTTTTACATGATGAGCCCGTATGTGTTGAAAACCCT 1081
Query 1148 GTCAACAGACAAGAAGGGTCTGTTTCATACATCTTTCAAGGTTCCTGATGTCTACGGTGT 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1082 GTCAACAGACAAGAAGGGTCTGTTTCATACATCTTTCAAGGTTCCTGATGTCTATGGTGT 1141
Query 1208 ATTCCAGTTTAAGGTTGAATATGAAAAGCTAGGCTACACTACATTATCTCTTTCGAAGCA 1267
|||||||||||| ||||||||||||||||| || |||| ||||||||||||||| |||||
Sbjct 1142 ATTCCAGTTTAAAGTTGAATATGAAAAGCTTGGATACAGTACATTATCTCTTTCAAAGCA 1201
Query 1268 GATTCCGGTGCGGCCTTACAGACACAATGAGTATGAGAGATTTATCCCAACTGCGTATCC 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GATTCCGGTGCGGCCTTACAGACACAATGAGTATGAGAGATTTATCCCAACTGCGTATCC 1261
Query 1328 TTATTATGGAGCCTGCTTTACGACGATGGCTGGTTTCTTCGTCTTCAGCTTCGTCTACCT 1387
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1262 TTATTACGGAGCCTGCTTTACGACGATGGCTGGTTTCTTCGTATTCAGCTTCGTCTACCT 1321
Query 1388 CTACCATAAGTAGAATCCCTTAAATGGT 1415
||||||||||||||||||||||||||||
Sbjct 1322 CTACCATAAGTAGAATCCCTTAAATGGT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63610709150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5