BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66700.1 Length=896 Score E Sequences producing significant alignments: (Bits) Value Ahg332898 jgi|Araly1|332898|fgenesh1_pm.C_scaffold_8002241 1085 0.0 > Ahg332898 jgi|Araly1|332898|fgenesh1_pm.C_scaffold_8002241 Length=696 Score = 1085 bits (587), Expect = 0.0 Identities = 661/695 (95%), Gaps = 11/695 (2%) Strand=Plus/Plus Query 87 ATGGATCATGGTAGGTTAATGGATGATCAAATGATGCTAGGCTCTCAAGTGTACCCCTAC 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATCATGGTAGGTTAATGGATGATCAAATGATGCTAGGCTCTCAAGTGTACCCCTAC 60 Query 147 ACGACCCA-ACCCCAAAATTCACACTGCATCATCGTTAACCAGATCGATGG--------- 196 |||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACGACCCAGA-CCCAAAATTCACACTGCATCATCGTTAACCAGATCGATGGATCATCATC 119 Query 197 AGGCGAAGAATCAAAACCGGTGAAGCGGAGGAGGAAGAGGAGGAGTAAAGGTTCATCAGC 256 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 120 AGGCGAAGGATCAAAACCGGTGAAGCGGAGGAGGAAGAGGAGGAGCAAAGGTTCATCAGC 179 Query 257 CACCAACGAAGAAGACGTGGCGGAGATCGGAGGGATGTTGAGGAAGAGGAAGTTGACCGA 316 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 180 CACCAACGAAGAAGACGTGGCAGAGATCGGAGGGATGTTGAGGAAGAGGAAGTTGACCGA 239 Query 317 TGAACAAGTGAACATGCTCGAATATAGCTTCGGGAACGAGCATAAGCTGGAGTCAGGGAG 376 ||| |||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 240 TGAGCAAGTGCACATGCTCGAATATTGCTTCGGGAACGAGCACAAGCTAGAGTCAGGGAG 299 Query 377 GAAGGAGAAGATCGCCGGAGAGTTAGGTCTTGACCCGAGACAGGTGGCTGTTTGGTTCCA 436 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 300 GAAGGAGAAGATCGCCGGAGAGTTAGGTCTTGATCCGAGACAGGTGGCTGTTTGGTTCCA 359 Query 437 GAACCGCCGTGCACGTTGGAAGAACAAGAAACTAGAGGAAGAGTACGCCAAACTCAAAAA 496 |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| || Sbjct 360 GAACCGCCGTGCGCGGTGGAAGAACAAGAAACTCGAGGAAGAGTACGCCAAACTCAAGAA 419 Query 497 CCACCACGACAACGTCGTACTCGGCCAATGCCAACTCGAGTCTCAGATATTGAAACTAAC 556 ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 420 CCACCACGACACCGTCGTCCTCGGCCAATGTCAACTCGAGTCTCAGATATTGAAACTAAA 479 Query 557 AGAACAATTGAGTGAAGCTCAAAGTGAAATTCGAAAACTGTCGGAACGACTTGAAGAAAT 616 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 480 AGAACAATTGAGTGAAGCTCAAAGTGAAATTCGAAAACTCTCGGAACGACTTGAAGAAAT 539 Query 617 GCCAACCAACAGTTCAAGTTCATCGCTTTCTGTTGAAGCCAACAATGCACCAACTGATTT 676 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 540 GCCAACCAACAGTTCAAGTTCATCGCTTTCTGTTGAAGCCAACGATGCACCGACTGATTT 599 Query 677 CGAGCTTGCCCCGGAAACTAATTATAACATCCCGTTTTATATGTTAGATAATAATTATTT 736 |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| Sbjct 600 CGAGCTTGCCCCGGAAACTAATTATACCATCCCATTCTATATGTTAGATAATAATTATTT 659 Query 737 ACAAAGCATGGAGTATTGGGATGGTTTGTATGTAT 771 ||||||||||||||||||||||||||||||||||| Sbjct 660 ACAAAGCATGGAGTATTGGGATGGTTTGTATGTAT 694 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33205060707 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5