BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66700.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332898 jgi|Araly1|332898|fgenesh1_pm.C_scaffold_8002241 1085 0.0
> Ahg332898 jgi|Araly1|332898|fgenesh1_pm.C_scaffold_8002241
Length=696
Score = 1085 bits (587), Expect = 0.0
Identities = 661/695 (95%), Gaps = 11/695 (2%)
Strand=Plus/Plus
Query 87 ATGGATCATGGTAGGTTAATGGATGATCAAATGATGCTAGGCTCTCAAGTGTACCCCTAC 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCATGGTAGGTTAATGGATGATCAAATGATGCTAGGCTCTCAAGTGTACCCCTAC 60
Query 147 ACGACCCA-ACCCCAAAATTCACACTGCATCATCGTTAACCAGATCGATGG--------- 196
|||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGACCCAGA-CCCAAAATTCACACTGCATCATCGTTAACCAGATCGATGGATCATCATC 119
Query 197 AGGCGAAGAATCAAAACCGGTGAAGCGGAGGAGGAAGAGGAGGAGTAAAGGTTCATCAGC 256
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 AGGCGAAGGATCAAAACCGGTGAAGCGGAGGAGGAAGAGGAGGAGCAAAGGTTCATCAGC 179
Query 257 CACCAACGAAGAAGACGTGGCGGAGATCGGAGGGATGTTGAGGAAGAGGAAGTTGACCGA 316
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 CACCAACGAAGAAGACGTGGCAGAGATCGGAGGGATGTTGAGGAAGAGGAAGTTGACCGA 239
Query 317 TGAACAAGTGAACATGCTCGAATATAGCTTCGGGAACGAGCATAAGCTGGAGTCAGGGAG 376
||| |||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 240 TGAGCAAGTGCACATGCTCGAATATTGCTTCGGGAACGAGCACAAGCTAGAGTCAGGGAG 299
Query 377 GAAGGAGAAGATCGCCGGAGAGTTAGGTCTTGACCCGAGACAGGTGGCTGTTTGGTTCCA 436
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 GAAGGAGAAGATCGCCGGAGAGTTAGGTCTTGATCCGAGACAGGTGGCTGTTTGGTTCCA 359
Query 437 GAACCGCCGTGCACGTTGGAAGAACAAGAAACTAGAGGAAGAGTACGCCAAACTCAAAAA 496
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 360 GAACCGCCGTGCGCGGTGGAAGAACAAGAAACTCGAGGAAGAGTACGCCAAACTCAAGAA 419
Query 497 CCACCACGACAACGTCGTACTCGGCCAATGCCAACTCGAGTCTCAGATATTGAAACTAAC 556
||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 CCACCACGACACCGTCGTCCTCGGCCAATGTCAACTCGAGTCTCAGATATTGAAACTAAA 479
Query 557 AGAACAATTGAGTGAAGCTCAAAGTGAAATTCGAAAACTGTCGGAACGACTTGAAGAAAT 616
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 AGAACAATTGAGTGAAGCTCAAAGTGAAATTCGAAAACTCTCGGAACGACTTGAAGAAAT 539
Query 617 GCCAACCAACAGTTCAAGTTCATCGCTTTCTGTTGAAGCCAACAATGCACCAACTGATTT 676
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 540 GCCAACCAACAGTTCAAGTTCATCGCTTTCTGTTGAAGCCAACGATGCACCGACTGATTT 599
Query 677 CGAGCTTGCCCCGGAAACTAATTATAACATCCCGTTTTATATGTTAGATAATAATTATTT 736
|||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 600 CGAGCTTGCCCCGGAAACTAATTATACCATCCCATTCTATATGTTAGATAATAATTATTT 659
Query 737 ACAAAGCATGGAGTATTGGGATGGTTTGTATGTAT 771
|||||||||||||||||||||||||||||||||||
Sbjct 660 ACAAAGCATGGAGTATTGGGATGGTTTGTATGTAT 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5