BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66710.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496930 jgi|Araly1|496930|fgenesh2_kg.8__2746__AT5G66710.1 1977 0.0
Ahg924246 jgi|Araly1|924246|scaffold_105527.1 235 6e-61
> Ahg496930 jgi|Araly1|496930|fgenesh2_kg.8__2746__AT5G66710.1
Length=1341
Score = 1977 bits (1070), Expect = 0.0
Identities = 1221/1293 (94%), Gaps = 13/1293 (1%)
Strand=Plus/Plus
Query 1 ATGAGACCTCGCGGGTATCAACGAGCTCCGTCAATGCAGAAACCAAC--AGATTATCCGA 58
|||||| ||||||||||||||||||||||||||||| || ||||||| ||| | |||||
Sbjct 1 ATGAGAGCTCGCGGGTATCAACGAGCTCCGTCAATGGAGGAACCAACGGAGA-T-TCCGA 58
Query 59 CGGATAAGACGCTTCATCCGAATTACCCATTTCTCATGTCCTCTCATGGTCTCAAGTCCT 118
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 59 CGGATAAGACGCTTCATCCAAATTACCCATTTCTGATGTCCTCACATGGTCTCAAGTCCT 118
Query 119 TTGAATCGGACGACGAAGACGACGACTCCGA-CTC--CTCCAACGATCAATTCGCTTTCA 175
||||| |||||||||| ||||||||||| | ||| ||||||||||||||||||||||
Sbjct 119 TTGAAACGGACGACGACGACGACGACTCAAACCTCGAGTCCAACGATCAATTCGCTTTCA 178
Query 176 CTATCAACACAGAGTTGCTTGTCGATGTCAAAGACATATCTATAGGGGACTTCATCGGCG 235
||||| |||||| ||||||||||||||||||||| |||| |||| ||| | |||||||
Sbjct 179 GTATCAGCACAGACTTGCTTGTCGATGTCAAAGACGTATCCATAGAGGAAGTAATCGGCG 238
Query 236 AAGGTTCATCATCTACT-GTCTACAGAGGATTGTTCAGGAGAGTTGTCCCTGTGTCTGTG 294
|||||||||| |||| | ||||||| ||||||||||| |||| || ||||||||||||||
Sbjct 239 AAGGTTCATCTTCTA-TAGTCTACAAAGGATTGTTCATGAGATTTATCCCTGTGTCTGTG 297
Query 295 AAGATATTCCAGCCTAAAAGAACATCTGCTTTAAGCATTGAGCAGAGGAAGAAGTTTCAG 354
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 298 AAGATATTCCAGCCTAAAAGAACATCTGCTGTAAGCATTGAGCAGAAGAAGAAGTTTCAA 357
Query 355 AGAGAGGTTTTGCTGCTTTCCAAGTTTAGACATGAAAACATTGTGCGGTTCATTGGGGCG 414
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 358 AGAGAGGTTTTGCTGCTTTCCAAGTTTAAACATGAAAACATTGTGCAGTTCATTGGGGCG 417
Query 415 TGCATAGAACCAAAGTTGATGATAATTACTGAACTCATGGAAGGCAATACTCTTCAGAAG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGCATAGAACCAAAGTTGATGATAATTACTGAACTCATGGAAGGCAATACTCTTCAGAAG 477
Query 475 TTTATGTTGAGTGTTCGTCCAAAGCCTCTTGATCTGAAGCTCTCCATTAGCTTTGCGTTG 534
|||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 478 TTTATGCTGAGTACTCGTCCAAAGCCTCTTGATCTGAAGCTCTCGATTAGCTTTGCATTG 537
Query 535 GATATTGCTCGGGGAATGGAGTTCTTGAATGCAAATGGCATTATTCACCGAGATTTGAAA 594
||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 538 GATATTGCTCGGGGAATGGAGTTCTTGAATGCAAATGGCATCATTCATCGCGATTTGAAG 597
Query 595 CCAAGTAATATGCTCTTAACAGGTGATCAGAAACATGTAAAGTTGGCTGACTTTGGACTT 654
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 598 CCAAGTAATATGCTCTTAACAGGTGATCAGAAACGTGTAAAGTTGGCTGATTTTGGACTT 657
Query 655 GCTAGAGAGGAGACTAAAGGTTTCATGACCTTTGAGGCTGGTACATACAGATGGATGGCT 714
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 658 GCTAGAGAGGAGACTAAAGGTTTCATGACCTGTGAGGCTGGTACATACAGATGGATGGCT 717
Query 715 CCAGAGTTATTCAGCTATGACACGCTTGAAATTGGCGAAAAGAAACACTACGATCATAAG 774
|||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 718 CCAGAGCTATTCAGCTATGACCCACTTCAAATTGGCGAAAAGAAACACTACGATCATAAG 777
Query 775 GTGGACGTTTACAGTTTCGCCATTGTTTTCTGGGAGTTACTTACCAACAAAACCCCATTC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGGACGTTTACAGTTTCGCCATTGTTTTCTGGGAGTTACTTACCAACAAAACCCCATTC 837
Query 835 AAAGGAAAGAACAACATCTTTGTAGCTTATGCTGCCAGCAAAAACCAGAGACCAAGTGTG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAAGGAAAGAACAACATCTTTGTAGCTTATGCTGCCAGCAAAAACCAGAGACCAAGTGTG 897
Query 895 GAGAATCTTCCAGAAGGCGTTGTTTCTATCCTGCAATCATGCTGGGCAGAGAATCCTGAC 954
|| |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||
Sbjct 898 GAAAATCTTCCAGAAGGAGTTGCTTCTATCCTGCAATCATGCTGGGCAGAGGATCCTGAC 957
Query 955 GCTCGTCCTGAGTTTAAAGAAATTACA-TATTCACTAACAAACTTGCTCAGAAGCTTAAG 1013
|||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 958 GCTCGTCCTGAGTTTAAAGAGATTACAGT-TTCACTAACAAACTTGCTCAGAAGCTTAAG 1016
Query 1014 CTCAGACACTGATGCTACTTCATCCAATAGCAAAGCCAATATAGCTACCGAGGATTCAAC 1073
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1017 CTCAGACACTGATGCCACTTCATCCAATAGCAAAACCAATATAGCTACCGAGGATTCAAC 1076
Query 1074 AAGCAGTCTGGTTCAAGAACGTGTTGTCTGTGATTGTCCCGGACTAAAGATGAGCAAGAC 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1077 AAGCAGTCTGGTTCAAGAACGTGTTGTCTGTGATTGTCCCGGACTAAAGATGACCAAGAC 1136
Query 1134 GAAGAAGCTGAAGAAGAAGACGAATAAACTGATGAATATGATCGTCCCTTTTCTCAAGAT 1193
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||
Sbjct 1137 GAAGAAGCTGAAGAAGAAGACGAATAAAGTGATGAATATGATCGTTCCTTTTCTCAGGAT 1196
Query 1194 CTTCAAAAGTTGTATGTCCAAGTGATGGAAGTAGAAACTCTCTGGTAAAAGATAAAAGGT 1253
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1197 CTTCAAAAGTTGTATGTCCAAGTGATGGAAGTAGAAACTCT--GGTAAAAGATAAAAGGT 1254
Query 1254 ATAGCAATACGAACTCGACAGAGTAAAACGAAA 1286
||||||||||||||| | |||||||||||||||
Sbjct 1255 ATAGCAATACGAACTTGTCAGAGTAAAACGAAA 1287
> Ahg924246 jgi|Araly1|924246|scaffold_105527.1
Length=326
Score = 235 bits (127), Expect = 6e-61
Identities = 155/168 (92%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 330 CATTGAGCAGAGGAAGAAGTTTCAGAGAGAGGTTTTGCTGCTTTCCAAGTTT-AGACATG 388
||||||||||| |||||||||||| ||| ||||||||||||||||||||||| | |||||
Sbjct 125 CATTGAGCAGAAGAAGAAGTTTCAAAGAAAGGTTTTGCTGCTTTCCAAGTTTCA-ACATG 183
Query 389 AAAACATTGTGCGGTTCATTGGGGCGTGCATAGAACCAAAGTTGATGATAATTACTGAAC 448
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 184 AAAACAATGTGCAGTTCATTGGGGCGTGCATAGAACCAAAGTTGATGATAATAACTGAAC 243
Query 449 TCATGGAAGGCAATACTCTTCAGAAGTTTATGTTGAGTGTTC-GTCCA 495
|||| ||||||||||||||||||||||||||| ||||| || |||||
Sbjct 244 TCATAGAAGGCAATACTCTTCAGAAGTTTATGCTGAGTACTCAGTCCA 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5