BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66710.1 Length=1448 Score E Sequences producing significant alignments: (Bits) Value Ahg496930 jgi|Araly1|496930|fgenesh2_kg.8__2746__AT5G66710.1 1977 0.0 Ahg924246 jgi|Araly1|924246|scaffold_105527.1 235 6e-61 > Ahg496930 jgi|Araly1|496930|fgenesh2_kg.8__2746__AT5G66710.1 Length=1341 Score = 1977 bits (1070), Expect = 0.0 Identities = 1221/1293 (94%), Gaps = 13/1293 (1%) Strand=Plus/Plus Query 1 ATGAGACCTCGCGGGTATCAACGAGCTCCGTCAATGCAGAAACCAAC--AGATTATCCGA 58 |||||| ||||||||||||||||||||||||||||| || ||||||| ||| | ||||| Sbjct 1 ATGAGAGCTCGCGGGTATCAACGAGCTCCGTCAATGGAGGAACCAACGGAGA-T-TCCGA 58 Query 59 CGGATAAGACGCTTCATCCGAATTACCCATTTCTCATGTCCTCTCATGGTCTCAAGTCCT 118 ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct 59 CGGATAAGACGCTTCATCCAAATTACCCATTTCTGATGTCCTCACATGGTCTCAAGTCCT 118 Query 119 TTGAATCGGACGACGAAGACGACGACTCCGA-CTC--CTCCAACGATCAATTCGCTTTCA 175 ||||| |||||||||| ||||||||||| | ||| |||||||||||||||||||||| Sbjct 119 TTGAAACGGACGACGACGACGACGACTCAAACCTCGAGTCCAACGATCAATTCGCTTTCA 178 Query 176 CTATCAACACAGAGTTGCTTGTCGATGTCAAAGACATATCTATAGGGGACTTCATCGGCG 235 ||||| |||||| ||||||||||||||||||||| |||| |||| ||| | ||||||| Sbjct 179 GTATCAGCACAGACTTGCTTGTCGATGTCAAAGACGTATCCATAGAGGAAGTAATCGGCG 238 Query 236 AAGGTTCATCATCTACT-GTCTACAGAGGATTGTTCAGGAGAGTTGTCCCTGTGTCTGTG 294 |||||||||| |||| | ||||||| ||||||||||| |||| || |||||||||||||| Sbjct 239 AAGGTTCATCTTCTA-TAGTCTACAAAGGATTGTTCATGAGATTTATCCCTGTGTCTGTG 297 Query 295 AAGATATTCCAGCCTAAAAGAACATCTGCTTTAAGCATTGAGCAGAGGAAGAAGTTTCAG 354 |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 298 AAGATATTCCAGCCTAAAAGAACATCTGCTGTAAGCATTGAGCAGAAGAAGAAGTTTCAA 357 Query 355 AGAGAGGTTTTGCTGCTTTCCAAGTTTAGACATGAAAACATTGTGCGGTTCATTGGGGCG 414 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 358 AGAGAGGTTTTGCTGCTTTCCAAGTTTAAACATGAAAACATTGTGCAGTTCATTGGGGCG 417 Query 415 TGCATAGAACCAAAGTTGATGATAATTACTGAACTCATGGAAGGCAATACTCTTCAGAAG 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TGCATAGAACCAAAGTTGATGATAATTACTGAACTCATGGAAGGCAATACTCTTCAGAAG 477 Query 475 TTTATGTTGAGTGTTCGTCCAAAGCCTCTTGATCTGAAGCTCTCCATTAGCTTTGCGTTG 534 |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 478 TTTATGCTGAGTACTCGTCCAAAGCCTCTTGATCTGAAGCTCTCGATTAGCTTTGCATTG 537 Query 535 GATATTGCTCGGGGAATGGAGTTCTTGAATGCAAATGGCATTATTCACCGAGATTTGAAA 594 ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 538 GATATTGCTCGGGGAATGGAGTTCTTGAATGCAAATGGCATCATTCATCGCGATTTGAAG 597 Query 595 CCAAGTAATATGCTCTTAACAGGTGATCAGAAACATGTAAAGTTGGCTGACTTTGGACTT 654 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 598 CCAAGTAATATGCTCTTAACAGGTGATCAGAAACGTGTAAAGTTGGCTGATTTTGGACTT 657 Query 655 GCTAGAGAGGAGACTAAAGGTTTCATGACCTTTGAGGCTGGTACATACAGATGGATGGCT 714 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 658 GCTAGAGAGGAGACTAAAGGTTTCATGACCTGTGAGGCTGGTACATACAGATGGATGGCT 717 Query 715 CCAGAGTTATTCAGCTATGACACGCTTGAAATTGGCGAAAAGAAACACTACGATCATAAG 774 |||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||| Sbjct 718 CCAGAGCTATTCAGCTATGACCCACTTCAAATTGGCGAAAAGAAACACTACGATCATAAG 777 Query 775 GTGGACGTTTACAGTTTCGCCATTGTTTTCTGGGAGTTACTTACCAACAAAACCCCATTC 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 GTGGACGTTTACAGTTTCGCCATTGTTTTCTGGGAGTTACTTACCAACAAAACCCCATTC 837 Query 835 AAAGGAAAGAACAACATCTTTGTAGCTTATGCTGCCAGCAAAAACCAGAGACCAAGTGTG 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 AAAGGAAAGAACAACATCTTTGTAGCTTATGCTGCCAGCAAAAACCAGAGACCAAGTGTG 897 Query 895 GAGAATCTTCCAGAAGGCGTTGTTTCTATCCTGCAATCATGCTGGGCAGAGAATCCTGAC 954 || |||||||||||||| |||| |||||||||||||||||||||||||||| |||||||| Sbjct 898 GAAAATCTTCCAGAAGGAGTTGCTTCTATCCTGCAATCATGCTGGGCAGAGGATCCTGAC 957 Query 955 GCTCGTCCTGAGTTTAAAGAAATTACA-TATTCACTAACAAACTTGCTCAGAAGCTTAAG 1013 |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| Sbjct 958 GCTCGTCCTGAGTTTAAAGAGATTACAGT-TTCACTAACAAACTTGCTCAGAAGCTTAAG 1016 Query 1014 CTCAGACACTGATGCTACTTCATCCAATAGCAAAGCCAATATAGCTACCGAGGATTCAAC 1073 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1017 CTCAGACACTGATGCCACTTCATCCAATAGCAAAACCAATATAGCTACCGAGGATTCAAC 1076 Query 1074 AAGCAGTCTGGTTCAAGAACGTGTTGTCTGTGATTGTCCCGGACTAAAGATGAGCAAGAC 1133 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1077 AAGCAGTCTGGTTCAAGAACGTGTTGTCTGTGATTGTCCCGGACTAAAGATGACCAAGAC 1136 Query 1134 GAAGAAGCTGAAGAAGAAGACGAATAAACTGATGAATATGATCGTCCCTTTTCTCAAGAT 1193 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| Sbjct 1137 GAAGAAGCTGAAGAAGAAGACGAATAAAGTGATGAATATGATCGTTCCTTTTCTCAGGAT 1196 Query 1194 CTTCAAAAGTTGTATGTCCAAGTGATGGAAGTAGAAACTCTCTGGTAAAAGATAAAAGGT 1253 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1197 CTTCAAAAGTTGTATGTCCAAGTGATGGAAGTAGAAACTCT--GGTAAAAGATAAAAGGT 1254 Query 1254 ATAGCAATACGAACTCGACAGAGTAAAACGAAA 1286 ||||||||||||||| | ||||||||||||||| Sbjct 1255 ATAGCAATACGAACTTGTCAGAGTAAAACGAAA 1287 > Ahg924246 jgi|Araly1|924246|scaffold_105527.1 Length=326 Score = 235 bits (127), Expect = 6e-61 Identities = 155/168 (92%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 330 CATTGAGCAGAGGAAGAAGTTTCAGAGAGAGGTTTTGCTGCTTTCCAAGTTT-AGACATG 388 ||||||||||| |||||||||||| ||| ||||||||||||||||||||||| | ||||| Sbjct 125 CATTGAGCAGAAGAAGAAGTTTCAAAGAAAGGTTTTGCTGCTTTCCAAGTTTCA-ACATG 183 Query 389 AAAACATTGTGCGGTTCATTGGGGCGTGCATAGAACCAAAGTTGATGATAATTACTGAAC 448 |||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 184 AAAACAATGTGCAGTTCATTGGGGCGTGCATAGAACCAAAGTTGATGATAATAACTGAAC 243 Query 449 TCATGGAAGGCAATACTCTTCAGAAGTTTATGTTGAGTGTTC-GTCCA 495 |||| ||||||||||||||||||||||||||| ||||| || ||||| Sbjct 244 TCATAGAAGGCAATACTCTTCAGAAGTTTATGCTGAGTACTCAGTCCA 291 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54164328390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5