BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66720.1
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918501 jgi|Araly1|918501|Al_scaffold_0008_3252 1953 0.0
> Ahg918501 jgi|Araly1|918501|Al_scaffold_0008_3252
Length=1242
Score = 1953 bits (1057), Expect = 0.0
Identities = 1184/1246 (95%), Gaps = 5/1246 (0%)
Strand=Plus/Plus
Query 137 ATGTCAGCGACTGCTCTCTCGAGATTAAACCCAGTTTCTCAATTTGGGTTTCAAAGAATC 196
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTCAGCGACTGCTCTCTCGAGATTAAACCCTGTTTCTCAATTTGGGTTTCAAAGAATC 60
Query 197 GTTGCTGGGAAAAGTAAGAGCTTCTTCTCCAATTCGGGTCAAAGGAGATTGTTTTCTGAT 256
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 61 GTTGCTGGGAAAAGTAAGAGCTTCTTCTCCAATTCCGGTGAAAGGAGATTGTTTTCTGAT 120
Query 257 AGTTCTCGGTTTCGTCAAGCCATGGCTGCTTCTGGTTCTTTGCCAGTGTTTGGAGACGCT 316
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCTCTCGGTTTCGTCAAGCCATGGCTGCTTCTGGTTCTTTGCCAGTGTTTGGAGACGCT 180
Query 317 TGTTTGGATGATTTGGTTACTACTTGTTCAAATGGCTTAGACTTCACTAAGAAGCGTTCT 376
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TGCTTGGATGATTTGGTTACAACTTGTTCGAATGGCTTAGACTTCACTAAGAAGCGTTCT 240
Query 377 AGTGGTGGTAGCTTCACTATTAATTGTCCTGTAGCTAGCATGAGACTTGGGAAGAGAGGG 436
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 241 AGTGGTGGTAGCTTCACCATTAATTGTCCTGTAGCTAGTATGAGACTTGGGAAGAGAGTG 300
Query 437 GGAATGATGAAGAACCGATTGGTTTGTCACTATTCTGTTGTTGA-TCCGCTAGAAAAGAG 495
||||| | |||||| |||||||||||||||||||||| |||| | |||| ||||||||
Sbjct 301 GGAATCACGAAGAATCGATTGGTTTGTCACTATTCTGCCATTGAGT-CGCTCGAAAAGAG 359
Query 496 TCGTGCACTCTTTGGGACATTGTCTAAGAGTGTTCATACTTCTCCTATGGCTTGTTTCTC 555
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 360 TCGTGCACTCTTTGGGACATTGACTAAGAGTGTTCATACATCTCCTATGGCTTGTTTCTC 419
Query 556 GGTTGGACCGGCTCATGAGCTGTCTTCTCTTAACGGTGGTTCTCAAGAGTCACCACCAAC 615
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 420 GGTTGGACCCGCTCATGAGCTGTCTTCTCTTAACGGTGGTTCTCAAGACTCACCACC-A- 477
Query 616 TACTACTACATCTCTTAAGAGTCTTAGGCTAGTGTCGGGGTCATGTTATCTCCCGCATCC 675
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 -ACTACTACATCTCTTAAGAGTCTCAGGCTAGTGTCGGGGTCATGTTATCTCCCGCATCC 536
Query 676 TGAAAAGGAAGCTACAGGTGGAGAAGACGCTCACTTTATCTGCGATGAAGAACAAGCTAT 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGAAAAGGAAGCTACAGGTGGAGAAGACGCTCACTTTATCTGCGATGAAGAACAAGCTAT 596
Query 736 TGGAGTTGCAGATGGAGTTGGCGGTTGGGCTGAGGTTGGTGTTAATGCGGGACTGTTTTC 795
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 597 TGGAGTTGCAGATGGAGTTGGCGGTTGGGCAGAGGTCGGTGTTAATGCCGGACTGTTTTC 656
Query 796 GCGTGAGCTTATGTCTTATTCAGTATCTGCAATTCAAGAACAGCATAAAGGTTCTTCTAT 855
||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 657 GCGTGAGCTTATGTCTTATTCAGTATCAGCGGTTCAAGAACAACATAAAGGTTCTTCTAT 716
Query 856 CGACCCTTTAGTGGTGTTAGAGAAAGCACATTCTCAAACCAAAGCCAAAGGCTCCTCCAC 915
|||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 717 CGACCCGTTATTGGTGCTAGAGAAAGCACATTCTCAAACCAGAGCCAAAGGCTCCTCCAC 776
Query 916 GGCTTGTATCATCGTTTTAAAAGATAAGGGATTACACGCCATTAATCTCGGAGACAGTGG 975
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 777 GGCTTGTATCATCGCTTTAACAGATAAGGGATTACACGCGATTAATCTCGGAGACAGTGG 836
Query 976 ATTCACGGTGGTTAGAGAGGGAACCACGGTGTTTCAGTCTCCGGTTCAGCAGCATGGATT 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATTCACGGTGGTTAGAGAGGGAACCACGGTGTTTCAGTCTCCGGTTCAGCAGCATGGATT 896
Query 1036 CAACTTCACTTATCAATTAGAGAGTGGGAACAGTGCCGACGTCCCTAGCTCCGGTCAGGT 1095
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 897 TAACTTCACTTATCAATTAGAGAGTGGAAACAGTGCCGATGTCCCTAGCTCCGGTCAGGT 956
Query 1096 ATTCACAATTGATGTTCAGTCTGGAGATGTCATTGTCGCTGGAACAGATGGAGTGTATGA 1155
||||||||| |||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 957 ATTCACAATAGATGTTGAGTCCGGAGATGTGATTGTCGCTGGAACTGATGGTGTGTATGA 1016
Query 1156 TAATTTATACAATGAAGAGATCACAGGAGTGGTGGTTAGCTCGGTGAGGGCCGGTTTAGA 1215
|||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1017 TAATCTATACAATGAAGAGATCACCGGAGTGGTGGTTAGTTCGGTTAGGGCCGGTTTAGA 1076
Query 1216 CCCGAAAGGCACAGCTCAGAAGATTGCAGAGTTGGCACGTCAAAGAGCAGTCGACAAAAA 1275
|||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1077 CCCGAAAGCCACAGCTCAGAAGATTGCAGATTTGGCACGTCAGAGAGCAGTCGACAAAAA 1136
Query 1276 ACGGCAGAGCCCTTTCGCAACTGCGGCTCAGGAGGCTGGCTACAGGTATTACGGAGGAAA 1335
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1137 AAGGCAGAGCCCTTTCGCTACTGCGGCTCAGGAGGCTGGATACAGGTATTACGGAGGAAA 1196
Query 1336 GCTTGATGACATCACTGCCGTCGTTTCTTACGTCACCTCATCTTAA 1381
||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1197 GCTTGATGACATCACTGTCGTTGTTTCTTACGTCACCTCATCTTAA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60182587100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5