BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66730.1
Length=2284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496927 jgi|Araly1|496927|fgenesh2_kg.8__2743__AT5G66730.1 2771 0.0
Ahg485418 jgi|Araly1|485418|fgenesh2_kg.5__1410__AT3G50700.1 558 5e-158
> Ahg496927 jgi|Araly1|496927|fgenesh2_kg.8__2743__AT5G66730.1
Length=2171
Score = 2771 bits (1500), Expect = 0.0
Identities = 1761/1882 (94%), Gaps = 37/1882 (2%)
Strand=Plus/Plus
Query 306 AGAGAGGTCAGAGAGTGAGTTATCAGAAAAGTTTGGTGGCGGAAAGGGG---AAAAGGAG 362
||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||
Sbjct 254 AGAGAGGTCAGAGAGAGAGTTATCAGAAAAGTTTGGTGGCGGAAAGGGGAAAAAAAAGAG 313
Query 363 ATTTTTACGAAAAGCAGATTGACTGGTAGCTGAagaagagagagaga-a-agagagaCTA 420
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 314 ATTTTTACGAAAAGCAGATTGACTGGTAGCTGAAGAAGAGAGAGAGAGAGAGAGAGACTA 373
Query 421 AACAGAGTAGGAGGAGGATGATAAACCCTAGATTGAGCTGAGCTGAGATTTGCTTC---T 477
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 374 AACAGAGT---AGGAGGATGATAAACCCTAGATTGAGCTGAGCTGAGATTTGCTTCTTTT 430
Query 478 TCCTTTTTGT-------GTTCAAAGATTGGAATTTAGTATC--TTTGAAACATGCCGGTT 528
| ||||||| | ||||||| |||||||||||| ||| | |||||||||||
Sbjct 431 TTTTTTTTGTGAAGGGGGAAAAAAGATT-GAATTTAGTATCTTTTTTACACATGCCGGTT 489
Query 529 GATTTAGATAATTCCTCTACAGTTTCCGGCGATGCAAGCGTCTCATCGACCGGAAACCAA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GATTTAGATAATTCCTCTACAGTTTCCGGCGATGCAAGCGTCTCATCGACCGGAAACCAA 549
Query 589 AATCTAACTCCTAAATCCGTCGGGAAGAAGAAACGGAATCTTCCTGGAATGCCTGATCCA 648
|||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 550 AATCAAACTCCCAAATCCGTCGGGAAGAAGAAACGGAATCTTCCCGGAATGCCTGATCCA 609
Query 649 GACGCTGAAGTGATAGCTTTGTCACCTAAAACACTTATGGCAACGAATCGATTCGTTTGC 708
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GACGCGGAAGTGATAGCTTTGTCACCTAAAACACTTATGGCAACGAATCGATTCGTTTGC 669
Query 709 GAAATCTGTAACAAAGGTTTTCAACGTGACCAGAATCTTCAGCTTCATCGTCGTGGTCAC 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GAAATCTGTAACAAAGGTTTTCAACGTGACCAGAATCTTCAGCTTCATCGTCGTGGTCAC 729
Query 769 AATCTTCCATGGAAACTTCGACAGAGATCGACTAAAGAAGTGAGGAAGAAGGTTTATGTT 828
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 730 AATCTTCCATGGAAACTTAGACAGAGATCGAGTAAAGAAGTGAGGAAGAAGGTTTATGTT 789
Query 829 TGTCCTGTTTCTGGCTGTGTTCATCATGACCCTTCACGTGCTCTTGGAGATCTTACTGGA 888
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 790 TGTCCTGTTTCTGGTTGTGTTCATCATGACCCGTCACGTGCTCTTGGAGATCTTACTGGA 849
Query 889 ATCAAGAAACACTTTTGTCGGAAACACGGCGAGAAGAAATGGAAGTGTGAGAAATGTTCT 948
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 850 ATCAAGAAACACTTTTGTCGGAAACACGGTGAGAAGAAATTCAAGTGTGAGAAATGTTCT 909
Query 949 AAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCATTCGAAGATTTGTGGCACCAAGGAG 1008
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 910 AAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCACTCGAAGATTTGTGGCACTAAGGAG 969
Query 1009 TATAAATGCGATTGTGGAACTCTGTTTTCTAGGAGAGATAGCTTTATAACGCATAGAGCC 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TATAAATGCGATTGTGGAACTCTGTTTTCTAGGAGAGATAGCTTTATAACGCATAGAGC- 1028
Query 1069 TTT-TGTGATGCCTTGGCTGAAGAGAGTGCGAAGAATCATACTCAAAGCAAGAAACTTTA 1127
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TTTCTGTGATGCGTTGGCTGAAGAGAGTGCGAAGAATCATACTCAAAGCAAGAAACTTTA 1088
Query 1128 TCCAGAAACTGTCACTAGGAAGAATCCTGAAATTGAGCAAAAATCTCCAGCAGCTGTTGA 1187
|||||||||||||| ||||||||||||||| ||||||| ||||| ||| | | ||||||
Sbjct 1089 TCCAGAAACTGTCAAAAGGAAGAATCCTGAATTTGAGCAGAAATCCCCACCCGTTGTTGA 1148
Query 1188 GTCTTCTCCGTCATTACCGCCTTCTTCTCCGCCATCGGTTGCTATAGCTCCGGCACCGGC 1247
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1149 ATCTTCTCCGTCGCTACCGCCTTCTTCTCCGCCATCGGTTGCTCTAGCTCCGGCACCAGC 1208
Query 1248 TATTTCGGTTGAGACTGAGTCTGTCAAAATCATATCTTCCTCTGTTTTGCCGATTCAGAA 1307
||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1209 TATTTCGGTTGAGTCTGAGCCTGTCAAAATCATATCTTCCTCGGTTTTGCCGATTCAGAA 1268
Query 1308 TTCTCCAGAATCTCAAGAAAACAACAATCATCCTGAAGTCATTATTGAGGAAGCTTCAAG 1367
|||||||||||||| ||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 1269 TTCTCCAGAATCTCCAGAAAACAACAATCACCCTGATGTCATAATCGAGGAAGCTTCAAG 1328
Query 1368 AACGATCGGGTTCAATGTTAGCTCATCGGATCTAAGCAATGATCACAGTAACAACAATGG 1427
||||||||| ||||||||||||||||| |||||| |||| ||||||||||| | |
Sbjct 1329 AACGATCGGTTTCAATGTTAGCTCATCCGATCTATGCAACGATCACAGTAA-A----T-- 1381
Query 1428 TGGATACGCAGGTTTGTTTGTATCATCAACAGCTTCGCCTAGTTTATATGCTTCCTCAAC 1487
| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1382 ---A--CGCAGGCTTGTTTGTATCATCAACAGCTTCGCCTAGTTTATATGCTTCCCCAAC 1436
Query 1488 CGCTTCTCCAAGTCTATTCGCACCATCGTCCTCCATGGAACCCATCTCTCTCTGTCTCTC 1547
||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||
Sbjct 1437 CGCTTCTCCAAGTCTATTCGCACCATCTTCCGCCTTGGAACCCATCTCTCTCCGTCTCTC 1496
Query 1548 GACGAACCCTTCTTTGTTCGGACCAACAATACGAGATCCGCCACATTTCCTAACTCCTCT 1607
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1497 GACGAATCCTTCTTTGTTCGGACCAACAATACAAGATCCGCCACATTTCCTAACTCCTCT 1556
Query 1608 CCCTCCTCAACCGGCAATGTCAGCTACTGCATTGCTCCAAAAAGCTGCACAAATGGGTTC 1667
|||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||
Sbjct 1557 TCCTCCTCAACCGGCAATGTCAGCTACCGCGTTGCTCCAGAAAGCTGCCCAAATGGGTTC 1616
Query 1668 CACGGGATCAGGAGGTTCGTTGCTTCGCGGGTTAGGCATAGTTTCAACTACTTCTTCATC 1727
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1617 CACGGGATCAGGAGGTTCGTTGCTTCGCGGGTTAGGCATTGTTTCAACTACTTCTTCATC 1676
Query 1728 TATGGAACTCAGCAATCATGATGCATTGTCATTAGCTCCTGGTCTTGGACTTGGACTACC 1787
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1677 AATGGAACTCAGCAATCACGATGCGTTGTCATTAGCTCCTGGTCTTGGACTTGGACTACC 1736
Query 1788 TTGTAGCAGCGGTGGTAGCGGATCGGGTCTAAAAGAGCTCATGATGGGGAATTCATCGGT 1847
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1737 TTGTAGCAGTGGTGGTAGCGGATCGGGTCTGAAAGAGCTCATGATGGGGAATTCGTCGGT 1796
Query 1848 GTTTGGTCCGAAACAGACGACACTAGACTTTCTTGGATTAGGAAGAGCTGTTGGTAATGG 1907
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1797 GTTTGGTCCCAAACAGACGACACTTGACTTTCTCGGATTAGGAAGAGCTGTTGGTAATGG 1856
Query 1908 TGGTAATACCGGAGGTGGATTGTCTGCTCTGTTAACTTCTATAGGTGGTGGAGGTGGAAT 1967
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1857 CGGTAATACCGGAGGCGGATTGTCTGCTCTGTTAACTTCTATAGGCGGTGGTGGTGGAAT 1916
Query 1968 CGATCTGTTTGGATCAGGGGAGTTTTCAGGCAAAGACATTGGAAGAAGTTCGTAAGAGAG 2027
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1917 AGATCTGTTTGGATCTGGGGAGTTTTCAGGGAAAGACATTGGAAGAAGTTCGTAAGCGAG 1976
Query 2028 ACAAAAGGCATGAACGTAGTAGACCAGTGTAGTATATAGTTCATCAAGTTTGTTTCAGGT 2087
||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1977 ACATAAGGCATGAACGTAGTAGAACAGTGTAGTATATAGTTTATCAAGTTTGTATCAGGT 2036
Query 2088 TTTAGATGTTTTGGTATCTTGTTTTAGTGAAAGCTTTAGTTTTATTCCCAA-GTGGGTTT 2146
||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2037 TTTAGATCTTTTGGTATCT-GTTTTAGTGAAAGCTTTAGTTTTATTCCCAATGTGGGTTT 2095
Query 2147 TCTCTCAAGTACATAAATCTCC 2168
||||||||||||||||||||||
Sbjct 2096 TCTCTCAAGTACATAAATCTCC 2117
Score = 322 bits (174), Expect = 7e-87
Identities = 241/270 (89%), Gaps = 17/270 (6%)
Strand=Plus/Plus
Query 1 GAAGGCTCCTTTTTCTTGGACAAGCCaaagaaaaagaaaaaaaaGGTTGAAGCTTTCACA 60
|||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct 1 GAAGGCTCCTTTTTCTTGGACAAGCC--A-AAAAA-AAAAAAAA--TTGAAGCTTTCACA 54
Query 61 CAAAGTCTCACACACAAGCCGCCTTAtttttttttCCGGTGATTCTTCAGAGAGAAACAA 120
||||||||| |||||||||||||||| ||| | || ||||||||||||||||||||||||
Sbjct 55 CAAAGTCTCTCACACAAGCCGCCTTA-TTTATCTT-CGGTGATTCTTCAGAGAGAAACAA 112
Query 121 GCCGGAAGTAGTAAGGATAACTCGTCTCCGGTGAAATCTCAGCCGTTGGATCAGATCGGT 180
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 113 GCCGGAAGTAGTAAGGATAACTCATCTCCGGTGGAATCTCAGCCGTTGGATCAGATCGGT 172
Query 181 GGACGGTGGATAAAAGATGCGTGTGGAGAAGAGAGAGTCTGGGTTAAATGATTAAGAGAT 240
|| |||||||| ||||||||||||||||| ||||||||||||||||| | |||
Sbjct 173 ------TG-ATAAAAGAAGCGTGTGGAGAAGAGAG--TCTGGGTTAAATGATTATGGGAT 223
Query 241 TTCTTGGGTAATGAAGttttgatttttttt 270
||||||||||||||| ||||||| ||||
Sbjct 224 CTCTTGGGTAATGAAGAGTTGATTTCTTTT 253
> Ahg485418 jgi|Araly1|485418|fgenesh2_kg.5__1410__AT3G50700.1
Length=1983
Score = 558 bits (302), Expect = 5e-158
Identities = 464/541 (86%), Gaps = 16/541 (3%)
Strand=Plus/Plus
Query 601 AAATCCGTCGGGAAGAAGAAACGGAATCTTCCTGGAATGCCTGATCCAGACG-CTGAAGT 659
|||||| ||| ||||||||||| || || || || |||||||||||||| | | |||||
Sbjct 604 AAATCCACCGGAAAGAAGAAACGTAACCTCCCCGGCATGCCTGATCCAGA-GTCAGAAGT 662
Query 660 GATAGCTTTGTCACCTAAAACACTTA-TGGCAACGAATC-GATTCGTTTGCGAAATCTGT 717
|||||||| ||||| |||||| ||| | ||||| || | ||||||| || |||||||||
Sbjct 663 TATAGCTTTATCACCAAAAACA-TTACTAGCAAC-AAACAGATTCGTATGTGAAATCTGT 720
Query 718 AACAAAGGTTTTCAACGTGACCAGAATCTTCAGCTTCATCGTCGTGGTCACAATCTT-CC 776
|||||||| |||||| | ||||| |||||||| |||||||| ||||| |||||| || ||
Sbjct 721 AACAAAGGGTTTCAAAGAGACCAAAATCTTCAACTTCATCGCCGTGGACACAAT-TTACC 779
Query 777 ATGGAAACTTCGACAGAGATCG-ACTAAAGAAGTGAGGAAGAAGGTTTATGTTTGTCCTG 835
|||||| ||||| |||| |||| || |||||||||| ||| || || |||||||||||||
Sbjct 780 ATGGAAGCTTCGTCAGAAATCGAAC-AAAGAAGTGAAGAAAAAAGTCTATGTTTGTCCTG 838
Query 836 -TTTCTGGCTGTGTTCATCATGACCCTTCACGTGCTCTT-GGAGATCTTACTGGAATCAA 893
| | | ||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 839 AAGT-TAGTTGTGTTCATCATGACCCTTCACGTGCT-TTAGGAGATCTAACTGGAATCAA 896
Query 894 GAAACACTTTTGTCGGAAACACGGCGAGAAGAAATGGAAGTGTGAGAAATGTTCTAAGAA 953
||||||||||||||||||||| || |||||||| ||||| ||||| |||||||| |||||
Sbjct 897 GAAACACTTTTGTCGGAAACATGGTGAGAAGAAGTGGAAATGTGATAAATGTTCAAAGAA 956
Query 954 GTATGCTGTTCAATCAGATTGGAAAGCTCATTCGAAGATTTGTGGCACCAAGGAGTATAA 1013
|| ||||||||||| ||||||||||||||||| ||||||||||| || || ||||||||
Sbjct 957 ATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAA 1016
Query 1014 ATGCGATTGTGGAACTCTGTTTTCTAGGAGAGATAGCTTTATAACGCATAGAGCCTTTTG 1073
||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1017 ATGTGATTGTGGGACTCTGTTTTCTAGGAGGGATAGTTTTATAACGCATAGAGCATTTTG 1076
Query 1074 TGATGCCTTGGCTGAAGAGAGTGCGAAGAA-TCATACTCAAAGCAAGAAACTTTATCCAG 1132
|||||| ||||||||||| ||||||| ||| ||||| ||| || ||||||| ||||||
Sbjct 1077 TGATGCTTTGGCTGAAGAAAGTGCGA-GAAGTCATAATCAGAGTAAGAAACAGAATCCAG 1135
Query 1133 A 1133
|
Sbjct 1136 A 1136
Score = 78.7 bits (42), Expect = 2e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 355 AAAAGGAGATTTTTACGAAAAGCAGATTGACTGGTAGCTGAagaa 399
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AAAAAGAGATTTTTACGAAAAGCAGATTGACTGGTAGCTGAAGAA 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86007773210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5