BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66740.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918499 jgi|Araly1|918499|Al_scaffold_0008_3250 1247 0.0
> Ahg918499 jgi|Araly1|918499|Al_scaffold_0008_3250
Length=744
Score = 1247 bits (675), Expect = 0.0
Identities = 721/744 (97%), Gaps = 0/744 (0%)
Strand=Plus/Plus
Query 370 ATGTGCGTCACGGGACAAGTGAAGATGACGGCGTCGGAGTTTCATCAAGGAGATGATTCG 429
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGTGTGTCACGGGACAAGTGAAGATGACGGCGTCGGAGTTTCATCAAGGAGATGAATCC 60
Query 430 GGCGTTAATCTAAAGAGCAACGACGAAATGGGTGGTTTCGTTTTATGGCAAAAGGATCCA 489
||||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 61 GGCGTGAATCTTAAGAGTAACGACGAAATGGGTGGTTTCGTTTTGTGGCAGAAGGATCCA 120
Query 490 GATCTTTGGTGTTTGGAGCTCGTCGTCTCCGGTTGCAAAGTGATATGTGGAAGCAACGGT 549
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GATCTTTGGTGTTTGGAGCTCGTCGTCTCCGGTTGTAAAGTGATATGTGGAAGCAACGGT 180
Query 550 CGGCTTTCATGGCGACATTCCTCTAACCAGCAAACTCCGGCGTCTACCGGAACGCCAAGA 609
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGCTTTCATGGCGGCATTCCTCTAACCAGCAAACTCCGGCGTCTACCGGAACGCCAAGA 240
Query 610 CCTCTCCGCCGGTTTTTACAGGGGTTAGATCCTCGTTCGACGGCGAATCTGTTTCTTGAC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTCTCCGCCGGTTTTTACAGGGGTTAGATCCTCGTTCGACGGCGAATCTGTTTCTTGAC 300
Query 670 GCAACGTGTATCGGAGAGAAGATAATCAACGGTGAGGATTGCTTTATCTTGAAACTGGAG 729
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAACGTGCATCGGAGAGAAGATAATCAACGGTGAGGATTGCTTTATCTTGAAACTGGAG 360
Query 730 ACGAGTCCGGCGGTTCGAGAAGCTCAAAGCGGTCCGAATTTTGAGATAATTCATCACACG 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACGAGTCCGGCGGTTCGAGAAGCTCAAAGCGGTCCGAATTTTGAGATAATTCATCACACG 420
Query 790 ATATGGGGTTATTTTAGTCAAAGATCGGGACTTTTGATTCAGTTCGAAGATTCGCGGCTT 849
|| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 421 ATTTGGGGTTATTTCAGTCAAAGATCGGGACTTTTAATTCAATTCGAAGATTCGCGACTT 480
Query 850 TTGAGAATGAGGACCAAGGAAGACGAAGATGTCTTCTGGGAGACTAGTGCTGAGTCGGTG 909
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 481 TTGAGAATGAGGACCAAGGAAGACGACGATGTTTTCTGGGAGACTAGTGCTGAGTCGGTG 540
Query 910 ATGGATGATTACCGATACGTTGACAATGTGAACATCGCTCACGGCGGGAAAACATCGGTC 969
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 ATGGATGATTACCGATACGTTGACAATGTGAACATCGCTCACGGCGGGAAAACGTCGGTT 600
Query 970 ACGGTTTTCCGGTACGGTGAAGCGTCGGCGAATCATCGGAGACAGATGACGGAGAAGTGG 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACGGTTTTCCGGTACGGTGAAGCGTCGGCGAATCATCGGAGACAGATGACGGAGAAGTGG 660
Query 1030 AGGATAGAAGAAGTTGATTTTAATGTTTGGGGTCTCTCCGTTGATCATTTTCTTCCTCCG 1089
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 661 AGGATAGAAGAAGTTGATTTTAATGTTTGGGGACTCTCGGTTGATCATTTTCTTCCTCCG 720
Query 1090 GCCAATTTGCAGATCGAAAAATGA 1113
|||||||||||||| |||||||||
Sbjct 721 GCCAATTTGCAGATTGAAAAATGA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5