BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66760.1
Length=2335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496924 jgi|Araly1|496924|fgenesh2_kg.8__2740__AT5G66760.1 3563 0.0
Ahg480752 jgi|Araly1|480752|fgenesh2_kg.3__3453__AT2G18450.1 1496 0.0
> Ahg496924 jgi|Araly1|496924|fgenesh2_kg.8__2740__AT5G66760.1
Length=2268
Score = 3563 bits (1929), Expect = 0.0
Identities = 2175/2288 (95%), Gaps = 40/2288 (2%)
Strand=Plus/Plus
Query 1 CCGTTCGCGTCTTCCTCTTAAAGGAAACCTCCTCTACG--CGA--AATTCGTATTCTCTC 56
||||||||||||||||||| |||| ||| ||||||||| | |||||||||||||||
Sbjct 1 CCGTTCGCGTCTTCCTCTTTAAGGGAACTTCCTCTACGAAAAACTAATTCGTATTCTCTC 60
Query 57 ATTTCTTCTACGGAGATTTGCATCGAAGAAACTGACTCGCTTGTGGAATCAACAACAAGA 116
|||||||||| |||||||||||||||||||||||| |||||||||||| || ||||| ||
Sbjct 61 ATTTCTTCTAAGGAGATTTGCATCGAAGAAACTGATTCGCTTGTGGAACCATCAACACGA 120
Query 117 CGATGTGGCGCTGCGTCTCTCGTGGCTTTCGAGCTCCTGCTTCAAAGACCTCTTCACTCT 176
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AGATGTGGCGCTGCGTCTCTCGTGGCTTTCGAGCTCCTTCTTCAAAGACCTCTTCACTCT 180
Query 177 TTGATGGCGTCTCTGGATCTCGCTTTTCCAGATTCTTCTCCACTGGTTCTACCGATACGA 236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TTGATGGCGTCTCTGGATCTCGCTTTTCCAGATTCTTCTCCACCGGTTCTACCGATACGA 240
Query 237 GATCCTCTTATACGATAGTGGATCACACTTATGATGCGGTTGTGGTGGGAGCTGGTGGTG 296
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 GATCCTCTTATACGATAGTGGATCACACCTATGATGCGGTTGTGGTGGGAGCTGGTGGTG 300
Query 297 CTGGTCTTAGGGCGGCGATTGGGTTATCGGAGCATGGCTTTAACACCGCTTGCATTACTA 356
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 CTGGACTTAGGGCGGCGATTGGGTTATCGGAGCATGGTTTTAACACCGCTTGCATTACTA 360
Query 357 AGCTTTTCCCCACAAGGTCACATACTGTTGCTGCTCAGGGTGGTATTAATGCTGCACTGG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCTTTTCCCCACAAGGTCACATACTGTTGCTGCTCAGGGTGGTATTAATGCTGCACTGG 420
Query 417 GAAATATGTCCGAAGATGACTGGAGATGGCACATGTATGACACTGTCAAAGGAAGTGACT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAATATGTCCGAAGATGACTGGAGATGGCACATGTATGACACTGTCAAAGGAAGTGACT 480
Query 477 GGCTAGGTGATCAAGATGCTATCCAGTACATGTGTAGAGAGGCACCAAAAGCAGTCATTG 536
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 481 GGCTAGGTGATCAAGATGCTATCCAGTATATGTGTAGAGAGGCACCAAAAGCGGTCATCG 540
Query 537 AACTTGAGAATTATGGGCTGCCTTTCTCTCGTACTGAAGAAGGGAAAATTTACCAGCGTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACTTGAGAATTATGGGCTGCCTTTCTCTCGTACTGAAGAAGGGAAAATTTACCAGCGTG 600
Query 597 CATTTGGTGGTCAGAGTCTTGACTTTGGAAAAGGTGGTCAGGCCTATCGTTGTGCTTGTG 656
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATTTGGTGGTCAAAGTCTTGACTTTGGAAAAGGTGGTCAGGCCTATCGTTGTGCTTGTG 660
Query 657 CTGCGGATAGGACTGGTCATGCTCTGTTGCATACTCTCTATGGACAAGCTATGAAGCATA 716
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 CTGCGGATCGGACTGGGCATGCTCTGTTGCATACTCTCTATGGACAAGCTATGAAGCACA 720
Query 717 ACACACAGTTCTTTGTTGAATACTTCGCCTTGGATCTGCTCATGGCTAGTGATGGCAGTT 776
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 721 ACACACAGTTCTTTGTTGAATACTTCGCCTTGGATTTGCTTATGGCTAGTGATGGCAGTT 780
Query 777 GCCAGGGTGTAATTGCACTAAACATGGAAGATGGAACATTGCATCGTTTCCGTTCTTCTC 836
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 781 GCCAGGGTGTAATTGCACTAAACATGGAAGATGGAACATTGCATCGTTTCCGCTCTTCAC 840
Query 837 AAACAATTTTGGCAACTGGGGGGTACGGCAGAGCATACTTCTCTGCAACCTCAGCACATA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAACAATTTTGGCAACTGGGGGGTACGGCAGAGCATACTTCTCTGCAACCTCAGCACATA 900
Query 897 CATGCACAGGGGATGGAAATGCAATGGTTGCACGGGCCGGTCTTCCACTGCAGGACTTGG 956
|||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 901 CATGCACAGGAGATGGAAATGCCATGGTTGCACGGGCCGGTCTTCCATTGCAGGACTTAG 960
Query 957 AGTTTGTTCAATTCCATCCAACTGGTATATATGGGGCCGGATGTCTCATCACCGAAGGAT 1016
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 961 AGTTTGTTCAATTCCATCCAACTGGTATATATGGGGCTGGATGTCTCATCACTGAAGGAT 1020
Query 1017 CTCGAGGTGAAGGTGGTATCCTTAGAAACAGTGAAGGTGAACGTTTTATGGAACGATATG 1076
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1021 CTCGAGGTGAAGGAGGTATCCTTAGAAACAGTGAAGGTGAACGTTTTATGGAGCGATATG 1080
Query 1077 CTCCTACAGCCAAGGATCTTGCATCAAGAGATGTTGTCTCCAGATCCATGACTATGGAAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTCCTACAGCCAAGGATCTTGCATCAAGAGATGTTGTCTCCAGATCCATGACTATGGAAA 1140
Query 1137 TCAGGGAAGGTCGTGGTGTAGGACCGCATAAGGATCATATCTATCTCCATCTGAATCATC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCAGGGAAGGTCGTGGTGTAGGACCGCATAAGGATCATATCTATCTCCATCTGAATCATC 1200
Query 1197 TTCCTCCAGAAGTTCTAAAAGAAAGGCTTCCTGGAATCTCTGAGACCGCTGCCATCTTTG 1256
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTCCTCCAGAAGTTCTGAAAGAAAGGCTTCCTGGAATCTCTGAGACCGCTGCCATCTTTG 1260
Query 1257 CTGGTGTTGATGTTACCAAAGAGCCAATTCCTGTCTTACCCACGGTTCATTATAACATGG 1316
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1261 CTGGTGTTGATGTTACCAAAGAGCCAATTCCCGTCTTACCCACGGTTCATTATAACATGG 1320
Query 1317 GTGGTATCCCAACAAACTACCATGGCGAGGTAGTTACCATCAAAGGCGATGATCCAGATG 1376
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1321 GTGGTATCCCAACAAACTACCATGGCGAGGTAGTTACCATCAAAGGCGATAATCCAGATG 1380
Query 1377 CAGTGATTCCTGGGCTAATGGCTGCTGGGGAGGCAGCTTGTGCATCTGTTCATGGTGCCA 1436
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1381 CAGTGGTACCTGGGCTAATGGCTGCTGGAGAGGCAGCTTGTGCATCTGTTCATGGTGCCA 1440
Query 1437 ACAGGCTTGGTGCAAATTCACTGCTCGACATTGTCGTATTTGGTCGTGCTTGTGCAAATA 1496
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1441 ACAGGCTTGGTGCAAATTCACTGCTCGACATTGTCGTCTTTGGTCGTGCTTGTGCAAATA 1500
Query 1497 GGGTTGCAGAGATAAGCAAACCAGGGGAGAAACAGAAACCTCTTGAGAAGGATGCGGGTG 1556
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GGGTTGCGGAGATAAGCAAACCAGGGGAGAAACAGAAACCTCTTGAGAAGGATGCGGGTG 1560
Query 1557 AGAAGACTATTGCATGGCTGGACAGGTTGAGAAACTCAAACGGGTCTCTACCTACTTCAA 1616
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1561 AGAAGACTATTGCATGGCTGGACAGGTTGAGAAACTCAAATGGGTCGCTTCCTACTTCAA 1620
Query 1617 CTATCAGATTGAACATGCAGAG-GATTATGCAGAACAACGCAGCTGTGTTCCGCACGCAA 1675
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1621 GTATCAGATTGAACATGCAGAGAG-TTATGCAGAACAACGCAGCTGTGTTCCGCACGCAA 1679
Query 1676 GAAACATTGGAAGAAGGTTGTCAGTTGATTGACAAGGCCTGGGAAAGTTTTGGGGACGTC 1735
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1680 GAAACATTGGAAGAAGGTTGTCAGTTGATTGACAAGGCCTGGGAAAGTTTTGGGGATGTC 1739
Query 1736 CAGGTGAAAGATCGGAGTATGATATGGAACTCGGATTTGATAGAGACATTGGAACTGGAG 1795
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1740 CAGGTGAAAGATCGGAGTATGATATGGAACTCTGATTTGATAGAGACATTGGAACTGGAG 1799
Query 1796 AACCTTTTGATAAACGCATCCATAACAATGCATTCAGCAGAAGCACGAAAGGAAAGCAGA 1855
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1800 AACCTTTTGATAAACGCTTCCATAACAATGCATTCAGCGGAAGCACGAAAGGAAAGTAGA 1859
Query 1856 GGAGCACATGCTCGGGAAGACTTCACGAAAAGAGAGGATGGAGAATGGATGAAGCATACA 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 GGAGCACATGCTCGGGAAGACTTCACGAAAAGAGAGGATGGAGAATGGATGAAGCATACA 1919
Query 1916 TTGGGATATTGGGAAGATGAGAAAGTGAGATTGGATTATAGGCCTGTTCACATGGACACT 1975
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1920 TTGGGATATTGGGAAGATGAGAAAGTGAGATTGGAGTATAGGCCTGTTCACATGGACACT 1979
Query 1976 CTCGACGATGAGATCGACACTTTCCCTCCCAAAGCTCGTGTCTATTGATCGAGCCCATGT 2035
|||||||||||||| ||||||||||||||||||||||||||||||||| | || |
Sbjct 1980 CTCGACGATGAGATTGACACTTTCCCTCCCAAAGCTCGTGTCTATTGA--GT----AT-T 2032
Query 2036 TTTTATTTTATCTGTTATCGGAATAATAATAATAATCAGGAACCCCCCaaaaaa-a---- 2090
|| | | || | |||||||||||||||||||||||| |||||| |
Sbjct 2033 G---ATCG-AGCCC--AT-G-AATAATAATAATAATCAGGAACCCAAAAAAAAACAAAAA 2084
Query 2091 GGGAATTAGGAGAAGA-AGACGGAGTTATGAGCTGATGGAGCACAAAGGACTGTTCTGAA 2149
|||||||||||||||| | | ||| ||||||||||||||||||||||||| |||||||||
Sbjct 2085 GGGAATTAGGAGAAGACAAA-GGAATTATGAGCTGATGGAGCACAAAGGAGTGTTCTGAA 2143
Query 2150 ACTGGGTTTACGTTTTA-CACCAGAAACGATGAAAATAAATTGATAGAAAGAGGAAAAAA 2208
|||||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||
Sbjct 2144 ACTGGGTTTACGTTTTTTCACCTGAAACGATGAAAATAAATTGATAGAG-GAG-AAAAAC 2201
Query 2209 CACTACAATTCTTATTTTCTTTATCAGTTCCTGA-A-----A-T-TGTTACATTCTTTGT 2260
| |||||||| ||||||||||||||||||||||| | | | |||||||||||||||
Sbjct 2202 C-CTACAATTATTATTTTCTTTATCAGTTCCTGATACTGTTAGTCTGTTACATTCTTTGT 2260
Query 2261 TACCTGTT 2268
||| ||||
Sbjct 2261 TACTTGTT 2268
> Ahg480752 jgi|Araly1|480752|fgenesh2_kg.3__3453__AT2G18450.1
Length=1907
Score = 1496 bits (810), Expect = 0.0
Identities = 1488/1814 (82%), Gaps = 52/1814 (3%)
Strand=Plus/Plus
Query 236 AGATCCTCTTATACGATAGTGGATCACACTTATGATGCGGTTGTGGTGGGAGCTGGTGGT 295
||||| || ||||| || || |||||||| |||||||||||||| || ||||||||||||
Sbjct 112 AGATCATCGTATACAATCGTAGATCACACGTATGATGCGGTTGTTGTAGGAGCTGGTGGT 171
Query 296 GCTGGTCTTAGGGCGGCGATTGGGTTATCGGAGCATGGCTTTAACACCGCTTGCATTACT 355
||||| || || || || || || ||||| || ||||| |||||||| ||||| || |||
Sbjct 172 GCTGGGCTAAGAGCAGCAATAGGATTATCAGAACATGGTTTTAACACGGCTTGTATCACT 231
Query 356 AAGCTTTTCCCCACAAGGTCACATACTGTTGCTGCTCAGGGTGGTATTAATGCTGCACTG 415
|||||||| || || | || ||||| |||||||||||||| ||||| |||||||| ||
Sbjct 232 AAGCTTTTTCCAACTCGTTCCCATACAGTTGCTGCTCAGGGAGGTATAAATGCTGCGTTG 291
Query 416 GGAAATATGTCCGAAGATGACTGGAGATGGCACATGTATGACACTGTCAAAGGAAGTGAC 475
|| |||||| |||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 292 GGTAATATGAGTGAAGATGACTGGAGATGGCATATGTATGATACTGTCAAGGGAAGTGAT 351
Query 476 TGGCTAGGTGATCAAGATGCTATCCAGTACATGTGTAGAGAGGCACCAAAAGCAGTCATT 535
||| |||||||||||||||| || ||||| ||||| || || ||||||||||| || |||
Sbjct 352 TGGTTAGGTGATCAAGATGCAATTCAGTATATGTGCAGGGAAGCACCAAAAGCTGTGATT 411
Query 536 GAACTTGAGAATTATGGGCTGCC-TTTCTCTCGTACTGAAGAAGGG-AAAATTTACCAGC 593
|| ||||||||||| || |||| ||| ||||| || |||| |||| ||||| || || |
Sbjct 412 GAGCTTGAGAATTACGGATTGCCATTT-TCTCGAACAGAAG-AGGGAAAAATATATCAAC 469
Query 594 GTGCATTTGGTGGTCAGAGTCTTGACTTTGGAAAAGGTGGTCAGGCCTATCGTTGTGCTT 653
| || |||||||| ||||||||||| ||||||||||||||||| || || ||||| || |
Sbjct 470 GAGCTTTTGGTGGCCAGAGTCTTGATTTTGGAAAAGGTGGTCAAGCATACCGTTGCGCAT 529
Query 654 GTGCTGCGGATAGGACTGGTCATGCTCTGTTGCATACTCTCTATGGACAAGCTATGAAGC 713
||||||| || | ||||| ||||||||||| |||||||| ||||| ||||| ||||| |
Sbjct 530 GTGCTGCTGACCGCACTGGGCATGCTCTGTTACATACTCTGTATGGCCAAGCAATGAAAC 589
Query 714 ATAACACACAGTTCTTTGTTGAATACTTCGCCTTGGATCTGCTCATG-GCTAGTGATGGC 772
| ||||| || |||||||| |||||||| ||||||||| || | ||| | ||||||||
Sbjct 590 ACAACACTCAATTCTTTGTGGAATACTTTGCCTTGGATTTGATAATGAAC-AGTGATGGA 648
Query 773 AGTTGCCAGGGTGTAATTGCACTAAACATGGAAGATGGAACATTGCATCGTTTCCGTTCT 832
| || || || || |||||||| |||||||||||||| || || |||||||||| | ||
Sbjct 649 ACCTGTCAAGGAGTCATTGCACTGAACATGGAAGATGGTACTTTACATCGTTTCCATGCT 708
Query 833 --TCTCAAACAATTTTGGCAACTGGGGGGTACGGCAGAGCATACTTCTCTGCAACCTCAG 890
| || || || ||||| || ||||| || || ||||| || || |||||||| ||||
Sbjct 709 GGT-TC-TACGATATTGGCTACCGGGGGCTATGGGAGAGCTTATTTTTCTGCAACTTCAG 766
Query 891 CACATACATGCACAGGGGATGGAAATGCAATGGTTGCACGGGCCGGTCTTCCACTGCAGG 950
||||||| |||||||| ||||||||||| ||||||||||| ||||| || || |||||||
Sbjct 767 CACATACGTGCACAGGAGATGGAAATGCTATGGTTGCACGAGCCGGGCTACCGCTGCAGG 826
Query 951 ACTTGGAGTTTGTTCAATTCCATCCAACTGGTATATATGGGGCCGGATGTCTCATCACCG 1010
| |||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| |
Sbjct 827 ATTTGGAGTTTGTTCAGTTTCATCCTACTGGTATATATGGAGCCGGATGTCTCATCACTG 886
Query 1011 AAGGATCTCGAGGTGAAGGTGGTATCCTTAGAAACAGTGAAGGTGA-ACGTTTTATGGAA 1069
||||| || |||||||||| || || || ||||||||||||||||| | || |||||
Sbjct 887 AAGGAGCTAGAGGTGAAGGAGGAATTCTCAGAAACAGTGAAGGTGAGA-AATTCATGGAC 945
Query 1070 CGATATGCTCCTACAGCCAAG-GATCTTGCATCAAGAGATGTTGTCTCCAGATCCATGAC 1128
|| |||||||| || | | || |||||||| ||||||||||| || || ||||| |||||
Sbjct 946 CGGTATGCTCCCAC-GGCTAGAGATCTTGCTTCAAGAGATGTCGTTTCAAGATCGATGAC 1004
Query 1129 TATGGAAATCAGGGAAGGTCGTGGTGTAGGACCGCAT-AAGGATCATATCTATCTCCATC 1187
|||||||||| | ||||| ||||||| |||||| || |||||||| || || || || |
Sbjct 1005 TATGGAAATCCGAGAAGGACGTGGTGCAGGACC-TATGAAGGATCACATATACCTTCA-C 1062
Query 1188 -TGAATCATCTTCCTCCAGAAGTTCTAAAAGAAAGGCTTCCTGGAATCTCTGAGACCGCT 1246
| || ||||| || |||||||| || ||||| ||||||||||| || ||||| || ||
Sbjct 1063 TTAAACCATCTACCACCAGAAGTGCTTAAAGAGAGGCTTCCTGGTATATCTGAAACTGCG 1122
Query 1247 GCCATCTTT-GCTGGTGTTGATGTTACCAA-AGAGCCAATTCCTGTCTTACCCACGGTTC 1304
|| || ||| || ||||| ||||||| ||| ||||||||||||||| || || || || |
Sbjct 1123 GCTAT-TTTCGCGGGTGTCGATGTTA-CAAGAGAGCCAATTCCTGTATTGCCTACTGTGC 1180
Query 1305 ATTATAACATGGGTGGTA-TCCCAACAAACTACCATGGCGAGGTAGTTACCATCAAAGGC 1363
||||||| |||||||||| |||| |||||||||||||| |||||| |||| | | |||
Sbjct 1181 ATTATAATATGGGTGGTATTCCC-ACAAACTACCATGGAGAGGTAATTACTGTTAGAGGT 1239
Query 1364 GATGATCCAGATGC-AGTGA-TTCCTGGG-CTAATGGCTGCTGGGGAGGCAGCTTGTGCA 1420
||||||||| |||| | | | |||| ||| ||||||||||| || || ||||||||||||
Sbjct 1240 GATGATCCAAATGCTA-T-AGTTCC-GGGACTAATGGCTGCAGGAGAAGCAGCTTGTGCA 1296
Query 1421 TCTGTTCATGGTGCCAACAGGCTTGGTGCAAATTCACTGCTCGACATTGTCGTATTTGGT 1480
|||||||||||||| || || ||||||||||||||||| || |||||||| || |||||
Sbjct 1297 TCTGTTCATGGTGCTAATAGACTTGGTGCAAATTCACTTCTTGACATTGTTGTTTTTGGA 1356
Query 1481 CGTGCTTGTGCAAATAGGGTTGCAGAGA-T-AAGCAAACCAGGGGAGAAACAGAAACCTC 1538
| ||||||||||| || |||||||||| | || |||||||| ||||||| ||||||||
Sbjct 1357 AGAGCTTGTGCAAACAGAGTTGCAGAGATTCAA--AAACCAGGCGAGAAACTGAAACCTC 1414
Query 1539 TTGAGAAGGATGCGGGTGAGAAGACTATTGCATGGCTGGACAGGTTGAGAAACTCAAACG 1598
| |||||||||||||||||||||| ||||| |||| ||||| | | |||||||||||||
Sbjct 1415 TAGAGAAGGATGCGGGTGAGAAGAGTATTGAATGGTTGGACCGAATAAGAAACTCAAACG 1474
Query 1599 GGTCTCTACCTACTTC-AACTATCAGATTGAACATGCAGAGGA-TTATGCAGAACAACGC 1656
|||| ||||| ||||| || ||| | || |||||||| | || | ||||| ||||| ||
Sbjct 1475 GGTCGCTACCGACTTCTAA-AATCCGCTTAAACATGCA-AAGAGTAATGCAAAACAATGC 1532
Query 1657 AGCTGTGTTCCGCACGCAAGAAACAT-TGGAAGAAGGTTGTCAGTTGATTGACAAGGCCT 1715
||||| || || ||||||||||| | | || ||||||||| | |||||||| ||| | |
Sbjct 1533 TGCTGTCTTTCGTACGCAAGAAAC-TCTAGAGGAAGGTTGTGATTTGATTGATAAGACGT 1591
Query 1716 GGGAAAGTTTTGGGGACGTCCAGGTGAA-AGATCGGAGTATGATATGGAACTCGGATTTG 1774
|||| |||||||| || ||| | || || ||||||||||||||||||||||||||||||
Sbjct 1592 GGGACAGTTTTGGTGATGTCAAAGT-AACGGATCGGAGTATGATATGGAACTCGGATTTG 1650
Query 1775 ATAGAGAC-ATTGGAACTGGAGAACCTTTTGATAAACGCATCCATAACAATGCATTCAGC 1833
||||| || || ||| | ||||| |||||| | || || | ||||||||||||||| ||
Sbjct 1651 ATAGAAACTAT-GGAGTTAGAGAATCTTTTGGTTAATGCGTGCATAACAATGCATTCTGC 1709
Query 1834 AGAAGC-ACGAAAGGAAAG-CAGAGGAGCACATGCTCGGGAAGACTTCACGAAAAGAGAG 1891
|| || | ||| |||||| | |||||||||||||||| || || ||||||||| ||||
Sbjct 1710 TGAGGCTAGGAA-GGAAAGTC-GAGGAGCACATGCTCGTGAGGATTTCACGAAACGAGAC 1767
Query 1892 GATGGAGAAT-GGATGAAGCATACATTGGGATATTGGGAAGATGAGAAAGTGAGATTGGA 1950
|||| | ||| |||||||||| |||||||| ||||||||||| | ||| |||| ||||||
Sbjct 1768 GATGCA-AATTGGATGAAGCACACATTGGGGTATTGGGAAGAAGGGAATGTGAAATTGGA 1826
Query 1951 TTATAGGCCTGTTCACATGGACAC-TCTCGACGATGAGATCGACACTTTCCCTCCCAAAG 2009
||||| || || || ||| | || | | || |||||| | |||||||| ||||| |||
Sbjct 1827 GTATAGACCAGTGCATATGAATACAT-TGGATGATGAGGTTGACACTTTTCCTCCTAAAC 1885
Query 2010 CTCGTGTCTATTGA 2023
||||||| ||||||
Sbjct 1886 CTCGTGTTTATTGA 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87950375705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5