BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66770.1
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496923 jgi|Araly1|496923|fgenesh2_kg.8__2739__AT5G66770.1 2752 0.0
> Ahg496923 jgi|Araly1|496923|fgenesh2_kg.8__2739__AT5G66770.1
Length=2142
Score = 2752 bits (1490), Expect = 0.0
Identities = 1739/1855 (94%), Gaps = 34/1855 (2%)
Strand=Plus/Plus
Query 121 AGAATGGCTTACATGTGCACTGATAGTGGCAATCTAATGGCTATTGCtcaacaagtcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGAATGGCTTACATGTGCACTGATAGTGGCAATCTAATGGCTATTGCTCAACAAGTCATC 119
Query 181 aaacagaagcagcaacaagaacaacaacagcagcaacatcatcaagACCATCAGATTTTT 240
|||||||||||||||||| | || || || || || |||||||||||||||||| |||||
Sbjct 120 AAACAGAAGCAGCAACAACATCATCATCATCATCATCATCATCAAGACCATCAGCTTTTT 179
Query 241 GGTATTAATCCTTTGTCTCTTAACCCATGGCCCAATACTTCCCTCGGGTTTGGGCTTTCA 300
||||| || |||||||||||||||||||||||||| || ||||||| ||||| |||||
Sbjct 180 GGTATCAACCCTTTGTCTCTTAACCCATGGCCCAACACCTCCCTCGCTTTTGGCCTTTCC 239
Query 301 GGTTCGGCTTTTCCCGACCCGTTTCAAGTTACCGGCGGCGGAGATTCCAACGATCCTGGC 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 240 GGTTCGGCTTTTCCCGACCCCTTTCAAGTTACCGGCGGCGGAGATTCCAACGATCCTGCC 299
Query 361 TTTCCTTTTCCTAACTTAGACCACCACCACGCCACAACCACCGGCGGTGGGTTCAGGTTA 420
|||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||
Sbjct 300 TTTCCTTTTCCTAACTTAGACCACCACCACGCCACATCCGCCGGCGGTGGGTTTAGGCTA 359
Query 421 TCTGATTTCGGCGGTGGAACCGGCGGCGGCGAGTTTGAGTCCGACGAGTGGATGGAGACT 480
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 360 TCTGATTTCGGCGGTGGAACCGGCGGTGGTGAGTTTGAGTCCGACGAGTGGATGGAGACT 419
Query 481 CTTATCAGCGGTGGAGACTCCGTTGCAGACGGTCCTGATTGTGACACCTGGCATGATAAT 540
||||| ||||||||||| | | | ||||||||||||||| |||||| |||||
Sbjct 420 CTTATTAGCGGTGGAGA--------C-G-C--TCCTGATTGTGACACGTGGCATAATAAT 467
Query 541 CCCGATTACGTAATCTACGGTCCTGATCCATTCGATACTTACCCGAGTCGACTCAGTGTC 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 468 CCCGATTACGTAATCTACGGTCCTGATCCTTTCGATACTTACCCGAGTCGACTCAGTGTC 527
Query 601 CAACCGTCAGATCTAAACCGAGTCATTGACACGTCGA-GTCCGCTTCCTCCGCCGACCTT 659
|||||||||||||| || | || | | | ||| | ||| | |||||||||||||||
Sbjct 528 CAACCGTCAGATCTCAA-C---TCGTCG--A-GTCCACTTCCTCATCCTCCGCCGACCTT 580
Query 660 GTGGCCTCCTTCTTCGCCATTATCGATTCCTCCGCTTACTCATGAGTCACCAACCAAAGA 719
|||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 581 GTGGCCTCCTCCTTCCCCATTATCGATTCCTCCGCTTCCTCATGACTCACCAACCAAAGA 640
Query 720 AGATCCAGAGACTAACGACTCCGAAGACGATGACTTCGACCTAGAACCACCTCTCCTCAA 779
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 641 AGATCCGGAGACTAACGACTCCGAAGACGATGACTTCGACCTAGAACCTCCTCTCCTCAG 700
Query 780 AGCTATATACGACTGTGCACGGATCTCAGACTCTGACCCTAACGAAGCTTCCAAGACGCT 839
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 701 AGCTATCTACGACTGTGCACGGATCTCAGACTCTGACCCTAACGAAGCTTCGAAGACGCT 760
Query 840 TCTTCAGATCCGAGAATCTGTATCGGAGCTAGGTGATCCGACGGAGCGAGT-TGCATTTT 898
| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 761 TGTTCAAATCCGAGAATCTGTATCGGAGCTAGGTGATCCGACGGAGCGAGTGGGC-TTTT 819
Query 899 ACTTCACGGAAGCTCTCTCCAACAGACTGTCTCCTAATTCGCCGGCGACGTCGTCTTCTT 958
|||||||||||||||||||||||||| | |||||| ||||||||||||||||| || |
Sbjct 820 ACTTCACGGAAGCTCTCTCCAACAGATTATCTCCTGATTCGCCGGCGACGTCG---TCGT 876
Query 959 CTTCATCTACGGAGGATTTAATCTTATCTTATAAAACCCTAAACGACGCTTGTCCTTACT 1018
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 877 CTTCGTCTACGGAGGATTTAATCTTATCTTATAAAACCCTAAACGACGCATGTCCATACT 936
Query 1019 CCAAATTCGCACATTTGACGGCGAATCAAGCGATTCTAGAAGCGACGGAGAAGTCGAACA 1078
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 937 CCAAATTCGCACATTTGACGGCGAATCAAGCGATTCTAGAAGCAACGGAGAATTCAAACA 996
Query 1079 AGATTCACATCGTCGATTTTGGAATCGTTCAAGGTATACAATGGCCTGCTCTTCTTCAAG 1138
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 997 AGATTCACATCGTCGATTTTGGAATCGTTCAAGGTATTCAATGGCCTGCTCTTCTTCAAG 1056
Query 1139 CTCTAGCTACTCGTACTTCTGGTAAACCCACTCAAATCCGGGTCTCGGGTATACCCGCTC 1198
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 CTCTAGCTACTCGTTCTTCTGGTAAACCCACTCAAATCCGGGTCTCGGGTATACCCGCTC 1116
Query 1199 CATCTCTCGGTGAATCTCCGGAACCGTCGTTAATCGCCACCGGAAACCGCCTCCGTGATT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CATCTCTCGGTGAATCTCCGGAACCGTCGTTAATCGCCACCGGAAACCGCCTCCGTGATT 1176
Query 1259 TCGCCAAGGTTCTGGATCTGAATTTCGATTTCATCCCAATTCTCACTCCCATACATTTAC 1318
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TCGCCAAGGTCCTGGATCTGAATTTCGATTTCATCCCAATTCTCACTCCCATACATTTAC 1236
Query 1319 TTAACGGGTCAAGTTTCCGGGTCGACCCGGATGAAGTACTGGCCGTGAATTTCATGCTCC 1378
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1237 TAAACGGGTCAAGTTTCCGGGTCGACCCGGATGAAGTACTAGCCGTGAATTTCATGCTCC 1296
Query 1379 AGCTCTACAAATTACTCGACGAGACGCCGACGATAGTTGACACCGCACT-ACGGCTCGCC 1437
||||||||||| ||||||||||||| ||||| || ||||||||||| || | ||||||||
Sbjct 1297 AGCTCTACAAACTACTCGACGAGACACCGACCATCGTTGACACCGCCCTGA-GGCTCGCC 1355
Query 1438 AAATCGTTGAACCCGAGGGTCGTCACTCTCGGAGAATACGAAGTGAGCTTAAACCGGGTC 1497
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 AAATCGTTAAACCCGAGGGTCGTCACTCTCGGAGAATACGAAGTGAGCTTAAACCGGGTC 1415
Query 1498 GGTTTCGCTAACCGGGT-AAAGAACGCGCTTCAATTCTATTCCGCGGTTTTCGAATCCCT 1556
||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1416 GGTTTCGCTAACCGGGTGAAA-AACGCTCTTCAATTCTATTCCGCGGTTTTCGAATCCCT 1474
Query 1557 TGAACCGAACTTGGGGCGTGATTCGGAGGAGAGAGTGAGAGTTGAGCGAGAGTTGTTCGG 1616
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1475 CGAACCGAACTTGGGGCGTGATTCGGAAGAGAGAGTGAGAGTTGAGCGAGAGTTGTTCGG 1534
Query 1617 CCGGAGAATCTCGGGTTTGATTGGACCGGAGAAAACCGGAATTCATAGAGAAAGAATGGA 1676
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1535 CCGGAGAATATCAGGTTTGATTGGACCGGAGAAAACCGGAATCCATAGAGAAAGAATGGA 1594
Query 1677 AGAGAAAGAGCAATGGCGGGTATTAATGGAGAATGCCGGTTTTGAATCGGTTAAGCTGAG 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 AGAGAAAGAGCAATGGCGGGTATTAATGGAGAATGCCGGTTTTGAATCGGTTAAGCTGAG 1654
Query 1737 TAATTACGCAGTGAGCCAAGCGAAGATTCTATTGTGGAATTACAATTACAGCAATTTGTA 1796
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1655 TAATTACGCAGTGAGCCAAGCCAAGATTCTTTTGTGGAATTACAATTACAGCAATTTGTA 1714
Query 1797 TTCAATTGTTGAATCTAAGCCTGGCTTCATCTCTTTGGCCTGGAACGATTTACCTCTCCT 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 TTCAATTGTTGAATCTAAGCCTGGCTTCATCTCTTTGGCCTGGAACGATTTACCTCTCCT 1774
Query 1857 CACTCTTTCTTCCTGGCGATAACCAAACCAAACCGATCCGGTATTCTTAGTTTTGTTTTG 1916
|||||||||||| ||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1775 CACTCTTTCTTCTTGGCGATAACCGAACC-----GATCCGGTATTCTTAGTTTTGTTTTC 1829
Query 1917 TTTTCAATGTTATTTTTGGTTAGACAAATATTCAATTGTTAATATACTCCGTGGT 1971
||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1830 TTTCCAATGTTATTTTTGGTTAGACAAATATTTAATTGTTAATATACTCCATGGT 1884
Score = 272 bits (147), Expect = 8e-72
Identities = 229/264 (87%), Gaps = 23/264 (9%)
Strand=Plus/Plus
Query 2019 GGTAGGTTTTGAATTCTCTGAACCTTATGTG--TTTTTTGGTAACATCATTTGGATTTGT 2076
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1896 GGTAGGTTTTGAATTCTCTGAACCTTATGTGTTTTTTTTGGTAACATC-TTTGGATTTGT 1954
Query 2077 GAACTAGGTTTAAA-AACTGGTCTTAGTCTTGTTG-TTTTCTCATTAGATAATTTAAACT 2134
||| | |||||||| | ||| |||||||||||||| ||||||| ||||||||||||||||
Sbjct 1955 GAAGTTGGTTTAAACAGCTGCTCTTAGTCTTGTTGTTTTTCTCTTTAGATAATTTAAACT 2014
Query 2135 GGTTTGCTTCTTTATTTTTGGTTGGATAAAGTGACCGGTTCTGGTCATCTGTTTGA-GAT 2193
||||||||| ||| | | | |||||||||||||||||| ||||| | |||
Sbjct 2015 GGTTTGCTT-TTT-T----------A-A--GTGACCGGTTCTGGTCATTTGTTTAAAGAT 2059
Query 2194 GTAATTACTATTTCATAAAATTAGGAAGTTGAAAGCCAAATA-TATTTGTAACTACTCTT 2252
||||||| | |||||||| ||||||||| |||||||||| || |||||||||||||||||
Sbjct 2060 GTAATTATTTTTTCATAAGATTAGGAAGGTGAAAGCCAA-TAATATTTGTAACTACTCTT 2118
Query 2253 TTATTTGTAATTTTGCTCAAAAAA 2276
||||||||||||||||||| ||||
Sbjct 2119 TTATTTGTAATTTTGCTCAGAAAA 2142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86426765905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5