BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G66780.1

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496922 jgi|Araly1|496922|fgenesh2_kg.8__2738__AT5G66780.1         610    4e-174


> Ahg496922 jgi|Araly1|496922|fgenesh2_kg.8__2738__AT5G66780.1
Length=575

 Score =  610 bits (330),  Expect = 4e-174
 Identities = 401/435 (92%), Gaps = 6/435 (1%)
 Strand=Plus/Plus

Query  1    AAAAACTACTTACTCTATAAATTTAAGCTTCAAGAAACCTCCAAAAGCAGAGAAATGATC  60
            |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1    AAAACCTACTTGCTCTATAAATTTAAGCTTCAAGAAACCTCCAAAAGCTGAGAAATGATC  60

Query  61   AACGCTTTTAAGACTATCCGATCACTGCCCTCGAATACCACCGTCTCGTTCTGCTCAACA  120
            ||||| || ||| | ||||||||||||||||||||||||   ||||  |||| |||| | 
Sbjct  61   AACGCGTTAAAGTCCATCCGATCACTGCCCTCGAATACC---GTCTATTTCTTCTCACCG  117

Query  121  CCATCTCGATTAGGCCGGAAAGTCACTGGAGTTAGTTTTGCCACCACTTCTGAT---CAG  177
            || |||||||||||||| ||||||||||||||||||||||||||| ||||||||   |||
Sbjct  118  CCGTCTCGATTAGGCCGCAAAGTCACTGGAGTTAGTTTTGCCACCTCTTCTGATGATCAG  177

Query  178  CAAAAGATGGATAAAAAGCCTGAAAATCCAAACGAGAAAACCGGTGACGTGATGTCGCAT  237
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  178  CAAAAGATGGATAAAAAGCCTGAAAACCCAAACGAGAAAACCGGTGACGTGATGTCGCAT  237

Query  238  TCTTATGGAGAAGGGTACGCAACAAGGTCTGACGAAGAAGGGTTTGGAGGAATCTATGGA  297
            || ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct  238  TCGTATGGAGAAGGGTACGCAACAAGGTCTGATGAAGAAGGGTTTGGAGGAACCTATGGA  297

Query  298  GGAAATCAAACACTTCAGAAGGAAAACGAGATCCATGAGAATCACCCTGATTACGACAAA  357
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct  298  GGAAATCAAACACTTCAAAAGGAAAACGAGATCCATGAGAATCACCCTGATTATGACGAA  357

Query  358  ACGCAAGGTAGCGAATCGAAGGAGAAGGAGAAAGCAAGGAACCAGACACAATCCCACTGC  417
            || |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  358  ACTCAAGGTAGCGAAGCTAAGGAGAAGGAGAAAGCAAGGAACCAGACACAATCTCACTGT  417

Query  418  TAAAGAAAAAATGAT  432
            | |||||||||||||
Sbjct  418  TGAAGAAAAAATGAT  432


 Score =  148 bits (80),  Expect = 4e-35
 Identities = 134/157 (85%), Gaps = 15/157 (10%)
 Strand=Plus/Plus

Query  465  AAATCAGACTTGTGCTCTGTAGTTCGTAGACTCTGGTTAGAGttttttttttGTTAATTG  524
            ||||||| ||| |||||||||||| ||||||| ||||| |||      | || |||||||
Sbjct  433  AAATCAGGCTTATGCTCTGTAGTTTGTAGACTTTGGTTTGAG------TATT-TTAATTG  485

Query  525  CGTTTTTTGACCCGTAACCTTTACCGGGTTTTTGTTGG-TTATCCTTATCACTTTTGTAA  583
            ||||||||||||||||||||||||||||||||| |||| ||||||||||       ||||
Sbjct  486  CGTTTTTTGACCCGTAACCTTTACCGGGTTTTTTTTGGGTTATCCTTAT-------GTAA  538

Query  584  CACTCGTTGAATTAGTAGTTTTTGTTGATTGTTGAAC  620
            |||||||||||||||||||||||||||||| ||||||
Sbjct  539  CACTCGTTGAATTAGTAGTTTTTGTTGATTATTGAAC  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22949996034


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5