BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66790.1
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918493 jgi|Araly1|918493|Al_scaffold_0008_3244 2538 0.0
> Ahg918493 jgi|Araly1|918493|Al_scaffold_0008_3244
Length=1839
Score = 2538 bits (1374), Expect = 0.0
Identities = 1669/1809 (92%), Gaps = 29/1809 (2%)
Strand=Plus/Plus
Query 40 ATGGCAGAAACTC-CTCAACCGTATCTCATCTTCGTCTTCTTCGTCTTCACTCTAACCGT 98
||||||||||||| | | |||||||||| ||||||||||| | |||||||| || ||||
Sbjct 1 ATGGCAGAAACTCGC-CCACCGTATCTCGTCTTCGTCTTC-T--TCTTCACTTTAGCCGT 56
Query 99 TGCTACACAAACCACCGGTTCGGTTAAGTGCAAAACAAGTTTGCTCCGTTACCCGTTTGG 158
||||||||| ||||||||||||||||||||||| || ||| |||| |||||||||| ||
Sbjct 57 TGCTACACAGACCACCGGTTCGGTTAAGTGCAAGACCGGTTCGCTCAGTTACCCGTTCGG 116
Query 159 TTTCTCCGACGGTTATCCGATCCGATTCAACTGCTCTGAGATAACCGGAGAGGCCGTGAT 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTTCTCCGACGGTTATCCGATCCGATTCAACTGCTCTGAGATAACCGGAGAGGCCGTGAT 176
Query 219 CGGTGAATTCGCTGTGCAAGAAGTGACAAACTCCAACATCTACGTCGAAATCCCGCCGGT 278
||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||
Sbjct 177 CGGTGAATTCGCTGTGCAAGAAGTGACAAACACCAACATATACGTCAAAATACCGCCGGT 236
Query 279 TTGCAAACGCAACATCCGTAAAATCGAACAACTTTTCCGGGAAAATCTT-GCTCCGTCGA 337
|||| ||||| | ||| ||||||||||||| || |||||||||||| || ||||| ||||
Sbjct 237 TTGCGAACGCGAGATCGGTAAAATCGAACAGCTCTTCCGGGAAAAT-TTCGCTCCATCGA 295
Query 338 AATTACAGAACATAATTCTCGTCCAAGGATGCAAGAAACAGAACAAGTCTTCTAATTGCT 397
|||||||||||||||||||||||||||||||| || |||| | |||| | |||| |
Sbjct 296 AATTACAGAACATAATTCTCGTCCAAGGATGC-----ACGGAAC-ACTCTTTTGATTGTT 349
Query 398 TAATCCGCAATAAATTCGTTGAAAACCGGTTAAATCTCAGCAAATGTAAATCTCCGGTTA 457
||||||| | |||||||||||| | ||||||||| |||||| ||||||||||| ||| |
Sbjct 350 TAATCCGGAGTAAATTCGTTGAGGATCGGTTAAATATCAGCAGATGTAAATCTCAGGTAA 409
Query 458 GCTGTCTCGACGGAGCAACAACGAC-A--ACTGCCGATGTGATGAGTTTAGGCGACGTTG 514
||||| || || || |||||||||| | | |||||||||||||||| | || |||||||
Sbjct 410 GCTGTTTCAACCGAACAACAACGACGACGATTGCCGATGTGATGAGTATCGGAGACGTTG 469
Query 515 TGAACGGAAGTGGATGTAAGTATTGGTTCTCTTCTATTTCTCAATCGCAAGTTTCGGTCA 574
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TCAACGGAAGTGGATGTAAGTATTGGTTCTCTTCTATTTCTCAATCGCAAGTTTCGGTCA 529
Query 575 ATTTGGGTCGACTCAAGCTTGATTGGTGGCTTAAGGGAAGTTGCAGTAACACCACTTGCT 634
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ATTTGGGTCGGCTTAAGCTTGATTGGTGGCTTAAGGGAAGTTGCAGTAACACCACTTGCT 589
Query 635 CGGAGAACGCAGACTGTGCCAAAGTTAAGCTCGACGACGGTGGACTCGGTCATCGCTGCA 694
|||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 590 CGGAGAGCGCAGACTGTGCCAATGTTAAGCTCGCCGACGGGGGACTCGGTCATCGCTGCA 649
Query 695 CTTGTCGTGAAGGATTTAGCGGTAAAGCCTTCACCGTGCCTGGTGGTTGCCACCGATTAG 754
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CTTGTCGCGAAGGATTTAGCGGTAAAGCCTTCACCGTGCCTGGTGGTTGCCACCGATTAG 709
Query 755 TTTACAAACGCAAAGGACTACACAAACTCGTTGTTCTTGGTACTGCGGGGATTTTGGTTG 814
|| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 710 TTCGCAAACGCAAAGGACTACACAAACTCATTGTTCTTGGTACTGCAGGGATTTTGGTTG 769
Query 815 GAGTTTTAGTAATCGTGGTCTTGATAGCTACATATTTCTTCCGGAACAAGCAATCTGCGT 874
| ||||||||||| | ||||||||||| ||||||| |||||||| || ||| |||
Sbjct 770 GCGTTTTAGTAATTGCGGTCTTGATAGTTACATATATCTTCCGG---AA-CAA---GCG- 821
Query 875 CATCTGAAAGAGCATCAATCGCGAATCGCTTGCTTTGCGAGCTAGCCGGAAACTCAAGTG 934
||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 822 -ATCTGCAAGAACATCAATCGCGAATCGCTTACTTTGCGAGCTAGCCGGAAACTCCAGCG 880
Query 935 TTCCTTTCTACACCTACAAAGAGATTGAGAAAGCTACCGATAGTTTCTCCGACAAGAACA 994
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 881 TTCCTTTCTACACCTACAAGGAGATTGAGAAAGCTACCGACAGTTTCTCCGACAAGAACA 940
Query 995 TGCTCGGAACCGGAGCATACGGAACAGTCTACGCAGGCGAATTCCCAAACAGCTCATGCG 1054
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 941 TGCTCGGAACCGGAGCGTACGGAACAGTCTACGCAGGCGAATTCCCAAACAGCTCATGTG 1000
Query 1055 TCGCTATAAAACGTCTCAAACACAAAGACACTACAAGCATTGACCAAGTTGTGAACGAGA 1114
|||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||
Sbjct 1001 TCGCTATAAAACGTCTCAGACACAAAGACACCACAAGCATTGACCAAGTTGTTAACGAGA 1060
Query 1115 TCAAGCTTCTTTCCTCTGTGAGCCACCCAAATCTAGTACGTCTCTTAGGTTGTTGCTTTG 1174
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1061 TCAAGCTTCTTTCCTCTGTGAGCCACCCAAACCTAGTCCGTCTCTTAGGTTGTTGCTTTG 1120
Query 1175 CAGATGGAGAACCGTTTCTAGTCTATGAGTTCATGCCAAACGGAACTCTTTATCAGCATT 1234
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1121 CAGATGGAGAACCGTTTCTAGTCTACGAGTTCATGCCAAACGGAACGCTTTATCAGCATT 1180
Query 1235 TACAACACGAGAGAGGCCAACCACCACTTTCTTGGCAGCTCCGACTCGCCATTGCGTGTC 1294
|||||||||||||||||||| |||| |||||||||| |||||||||||||| |||||||
Sbjct 1181 TACAACACGAGAGAGGCCAAACACCGCTTTCTTGGCCTCTCCGACTCGCCATAGCGTGTC 1240
Query 1295 AAACCGCAAACGCAATCGCACATCTCCACTCTTCAGTAAACCCTCCTATCTACCACCGAG 1354
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1241 AAACCGCAAACGCAATAGCACATCTCCACTCTTCAGTACACCCTCCTATCTACCACCGAG 1300
Query 1355 ACATAAAATCTAGTAACATCCTCCTTGACCACGAATTCAACTCCAAGATATCTGATTTCG 1414
|||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1301 ACATCAAATCTAGCAACATCCTCCTTGACCACGAATTTAACTCCAAGATCTCTGATTTCG 1360
Query 1415 GACTCTCTAGGCTCGGCATGTCTACCGATTTCGAAGCCTCTCATATCTCCACGGCTCCAC 1474
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1361 GACTCTCCAGGCTCGGCATGTCCACCGATTTCGAAGCATCTCATATCTCCACGGCTCCAC 1420
Query 1475 AAGGCACTCCAGGATACT-TAGATCCTCAATATCACCAAGATTTTCAGCTCTCGGACAAG 1533
|||||||||| ||||| | |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1421 AAGGCACTCCTGGATA-TGTAGACCCTCAGTATCACCAAGATTTTCAGCTCTCGGACAAG 1479
Query 1534 AGTGATGTCTATAGCTTTGGAGTTGTTCTCGTAGAAATCATCTCAGGCTTTAAAGTCATA 1593
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1480 AGTGATGTCTATAGCTTTGGAGTTGTTCTCATTGAAATCATCTCAGGCTTTAAAGTCATA 1539
Query 1594 GACTTCACTCGTCCCTACTCTGAAGTGAACCTAGCCTCTCTTGCCGTCGACAGGATCGGA 1653
|| ||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1540 GATTTCACTCGTCCCTACACTGAAGTGAACCTAGCCTCACTTGCGGTTGACAGGATCGGA 1599
Query 1654 AGAGGGCGTGTGGTAGATATCATCGATCCCTGCTTAAACAA-AGAAATCAATCCGAAAAT 1712
| |||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||
Sbjct 1600 AAAGGGCGTGTGGTAGATATCATCGATCCCTGCTTAAA-AACAGACATCGATCCGAAAAT 1658
Query 1713 GTTTGCATCTATCCACAACTTAGCAGAATTGGCGTTTCGCTGCTTATCCTTTCACAGAAA 1772
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1659 GTTTGCATCTATCCACAACTTAGCCGAATTGGCGTTTCGCTGCTTATCATTTCACAGAAA 1718
Query 1773 CATGAGGCCTACGATGGTAGAAATTACGGAAGATCTCCACCGGATTAAGCTTATGCACTA 1832
|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1719 CATGAGGCCTACAATGATAGAAATTACGGAAGATCTCCAACGGATTAAGCTTATGTACTT 1778
Query 1833 TGGTACAGA 1841
|||||||||
Sbjct 1779 TGGTACAGA 1787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77170836370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5