BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66800.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496920 jgi|Araly1|496920|fgenesh2_kg.8__2736__AT5G66800.1 857 0.0
> Ahg496920 jgi|Araly1|496920|fgenesh2_kg.8__2736__AT5G66800.1
Length=874
Score = 857 bits (464), Expect = 0.0
Identities = 590/645 (91%), Gaps = 31/645 (5%)
Strand=Plus/Plus
Query 1 TCTGTCTGTAATGGCATGCTTAGAAATGTACAACTCCAATGGTGGTGGTGGAACTCCCAT 60
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TCTGTCTCTAATGGCATGCTTAGAAATGTACAACTCCAATGGTGGTGGT---ACTCCCAT 57
Query 61 GAGTCCTAGAATCTCCTTCTCTAACGATTTCGTTGAGATTAGGCCAGAGACGACCAAGAC 120
||||||||||||||| ||||||||||||||||| ||||||| ||| |||| |||||||||
Sbjct 58 GAGTCCTAGAATCTCTTTCTCTAACGATTTCGTGGAGATTAAGCCTGAGAAGACCAAGAC 117
Query 121 GACGAGATCAAGCCCTCTCTCTAAACAAGAGGGTTCTTCTTCTTCTTTTTCAGATAATTT 180
||||||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 118 GACGAGATCAAGCCCTCTCTCTAAACAAGAGGG---TTCTTCTTC----T--GATAATTT 168
Query 181 CGAGTTCTCTGTCTCAAACTACACAATGATGCCAGCTGATGAACTTTTCTCTAAAGGAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CGAGTTCTCTGTCTCAAACTACACAATGATGCCAGCTGATGAACTTTTCTCTAAAGGAAA 228
Query 241 GCTTTTGCCTTTCAAGGAAACCAATCAAGTCCAGAGAACTTTAAGAGAAGAGCTTCTCGT 300
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 229 GCTTTTGCCTTTCAAGGAAACCAATCAAGTCCAGAGAACATTGAGAGAAGAGCTTCTCGT 288
Query 301 TGAAGAAGACGAAGAAGAAGGTCCACGTGATGCTACCAACatcttctctctcaagccacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TGAAGAAGACGAAGAAGAAGGTCCACGTGATGCTACCAACATCTTCTCTCTCAAGCCACC 348
Query 361 aatcttctcatcatcttcttcttcttcttcttcttcCAAGGGAAGGTGGAAAGGGCTTTT 420
||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 349 AATCTTCTCATCATCATCTTCTTCTTCT---------AAGGGAAGGTGGAAAGGGCTTTT 399
Query 421 GGGCCTTAAGAGGGCCCATGTTGGGTCTAAGAACAATGAAGAGCGATTTGTTCATCATAT 480
||||||||||||||||||| | ||||||||||||||||| || |||||||||||| ||
Sbjct 400 GGGCCTTAAGAGGGCCCATATCGGGTCTAAGAACAATGAGGAACGATTTGTTCAT-AT-- 456
Query 481 GATTAACAACAACAAACAATCTCAGGAAGCAATTGGTGGAAGAGAAGGGTCAAGTTGCAG 540
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 457 GATTAACAACAACAAACAATCTCAGGAAGCAATGGGTGGGAGAGAAGGGTCCAGTTGCAG 516
Query 541 GGAGATGAAGAAGAGTATGTAGAGCTTaaaaacaaaaaaG-----GCTTTCACTTGGttt 595
|||||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 517 GGAGATGAAGAAGAGTATGTAGAGTTTAAAAACAAAAAAAAAAAAGCTTTCACTTTGTTT 576
Query 596 ttgtttttttAGGAACATGGCTGCTTCCAAATTTTTAAAAATTTA 640
| || ||| |||||||||| ||||||||||||| |||| |||||
Sbjct 577 AT-TTATTT-AGGAACATGGTTGCTTCCAAATTTATAAATATTTA 619
Score = 239 bits (129), Expect = 3e-62
Identities = 241/288 (84%), Gaps = 35/288 (12%)
Strand=Plus/Plus
Query 676 aaaaaaaGACACTTATGTGTTGTTGACGGAGATGGTTTATTTCA-TTAACTGTTTTCCAC 734
|||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||| |
Sbjct 619 AAAAAAAGGCACTTATGTATTGTTGACGGAGATGGTTTATTTCATTTAACTCTTTTCCTC 678
Query 735 TACACATGTTTCATCGATTCTTCTGAGtttttatcttgttttttctttttcttttGAAGG 794
||| ||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 679 TACTCATGTTTCATCGATTCTTCTGAGTTTTTA------TTTTTC----T-TTTTGAA-- 725
Query 795 GTGTGAGTATTAGATCTATCTTTGTCGACTATTTGGAATGGATGTAGtttttttttttGT 854
| | | |||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 726 ---T-A-T-TTAGATCTATCTTTGT---C--TTTGGAATGGATGTAG----TTTTTTTGG 770
Query 855 CGTTGTACAAAAG--aaaaaaaGAAGAACAGAGTGTGAGTAGTTCAGAAAATTTAAGTTC 912
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 771 GGTTGTACAAAAGAAAAAAAAAAAAGAACAGAGTGTGAGTAGTTCAGAAAATTTAATTTC 830
Query 913 CAGTTGTTTTTTAAAATTGAAGCAACGCATATGTCTATTGTCTTCGTC 960
||||| || |||||||||| ||||||||||||| |||||||||||
Sbjct 831 CAGTT-TTA---AAAATTGAAGTAACGCATATGTCTTTTGTCTTCGTC 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5