BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66810.1
Length=2416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496919 jgi|Araly1|496919|fgenesh2_kg.8__2735__AT5G66810.1 3631 0.0
Ahg952195 jgi|Araly1|952195|scaffold_45000004.1 233 4e-60
Ahg939214 jgi|Araly1|939214|scaffold_503405.1 233 4e-60
> Ahg496919 jgi|Araly1|496919|fgenesh2_kg.8__2735__AT5G66810.1
Length=2388
Score = 3631 bits (1966), Expect = 0.0
Identities = 2271/2414 (94%), Gaps = 38/2414 (2%)
Strand=Plus/Plus
Query 1 ATGCCACGTGGCATTTATTATGTGGATTTGGATTTTCTAACTTGTTCTCCTCACGAAACA 60
||||||||||||| || |||||||| |||||| ||| | | |||| |||||||||||
Sbjct 1 ATGCCACGTGGCAATTGTTATGTGGGTTTGGA-TTT-T--C---TTCTACTCACGAAACA 53
Query 61 AAATTCACCCACACAAGACAAAGCGATCGTCGATCCCAC-C-CACA-ATCTAAGATCGCC 117
||||| |||| ||| |||||||||||||||||| | || | ||| | ||||
Sbjct 54 AAATT---TCACA-AAG----AGCGATCGTCGATCCCACACGCA-AGATC-GCG-GCGCC 102
Query 118 GGCCGATTCTCGTCGCCGACAAAAGAAGAACCGAGGAAGAG-GAAAGCAACTATGGATTC 176
|||||||||||||||||||||| ||||||||| |||| ||| |||| |||||||||||||
Sbjct 103 GGCCGATTCTCGTCGCCGACAAGAGAAGAACCTAGGATGAGAGAAA-CAACTATGGATTC 161
Query 177 CACACCTGTAAATTGGGAAGCGCTTGATGCTCTCATCATCGATTTCGTTAGCTCTGAAAA 236
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 CACACCTGTGAATTGGGAAGCGCTTGATGCTCTCATCATCGATTTCGTTAGCTCTGAAAA 221
Query 237 CCTGGTTGAAGACGCCGCCGCCGCCGTCAATTCACCTCCATCTCCATTATCGtctccttc 296
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 222 CCTGGTTGAAGACGCCGCCGCCGCCGCCAATTCATCTCCATCTCCATTATCGTCTCCTTC 281
Query 297 ttcttcttcatctccttctatttcctcttcttcttATCACTCCAGATTGATCATTCGCCG 356
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TTCTTCTTCCTCTCCTTCTATTTCCTCTTCTTCTTATCACTCCAGATTGATCATTCGCCG 341
Query 357 GATCCGAAGCTCGATTGAATCCGGTGACATTGAAACCGCCATCGATATTCTTCGCTCCCA 416
|||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 342 GATCCGAAACTCGATTGAATCCGGTGACATTGAGACCGCCATCGACATCCTTCGCTCCCA 401
Query 417 CGCTCCTTTCGTCCTCGATGATCATCGGATTCTATTTCGCCTCCAGAAACAGAAATTTAT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 CGCTCCTTTCGTCCTCGATGATCATCGGATTCTATTTCGCCTCCAGAAACAGAAATTTAT 461
Query 477 TGAGCTTTTGAGAAAAGGAACACATGAAGCTGCAATTGATTGCTTGAGGACTTGTGTTGC 536
|||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 462 TGAGCTGTTGAGAAAAGGAACACATGAAGCTGCAATTGGTTGCTTGAGAACTTGTGTTGC 521
Query 537 TCCCTGTGCTCTTGATGCCTACCCGGAAGCTTATGAGGAATTCAAGCATGTTCTTCTTGC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TCCCTGTGCTCTTGATGCCTACCCGGAAGCTTATGAGGAATTCAAGCATGTTCTTCTTGC 581
Query 597 ACTCATCTATGATAAAGATGACCAAACCTCTCCAGTAGCAAACGAGTGGGCAGAGAAAAG 656
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 582 ACTCATCTATGATAAAAATGACCAAACCTCTCCAGTAGCTCACGAGTGGGCAGAGAAAAG 641
Query 657 AAGGTATGAAATGGCTGGACTGATGTCATCTGTCTT-ACGAGCTTCTTTGCAAGCATATG 715
|||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 642 AAGGTATGAAATGGCTGGACTGATGTCATCTGTCTTGA-GAGCTTTTTTGCAAGCATATG 700
Query 716 ATCCAGTATTTTCTATGACACTAAGATATCTGATAAGCATACACAAAGGATTTTGCTTTC 775
||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 701 ATCCACTATTTTCGATGACACTAAGATATCTGATAAGCATACATAAAGGATTTTGCTTTC 760
Query 776 ACCAAGGAATTTCTTCCGCAGTTTCTGATCTAACCCACAGATTGCTCCTGGAGGAACGTG 835
||||||||||||| ||||||||||||||||| || || ||| ||||||||||||||||||
Sbjct 761 ACCAAGGAATTTCCTCCGCAGTTTCTGATCTCACTCATAGACTGCTCCTGGAGGAACGTG 820
Query 836 ATGCACCAGCCACGCCTATTGAAAGCATGTATGAAGTACCACCGTTTGATGAGGTGGATA 895
| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 821 ACGCACCAGCCACACCTCTGGAAAGCATGTATGAAGTACCACCGTTTGATGAGGTGGACA 880
Query 896 TACAGGCTCTTGCTCATGCGGTTGAGCTCACTAGACAAGGTGCTGTTGATAGTATGAAAT 955
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 881 TACAGGCTCTTGCTCATGCGGTTGAGCTCACTAGACAAGGTGCTGTTGATAGCATGAAAT 940
Query 956 TTGCCAAAGGTGACCTTTTCCAGGCATTCCAGAATGAATTGTGCAGGATGCGATTAGATG 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 941 TTGCCAAAGGTGACCTTTTCCAGGCATTCCAGAATGAATTGTGCAGGATGCGGTTAGATG 1000
Query 1016 TTTCTGTTCTTGATGAACTTGTTAAGGAGTACTGCATATACAGGGGTATTGTGGATTCAG 1075
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TTTCGGTTCTTGATGAACTTGTTAAGGAGTACTGCATATACAGGGGTATTGTGGATTCAG 1060
Query 1076 AGATGCAAATGATCACGA-TTCCTGCCAAACGCAACCAATCGGAGGTGGGCCGCAGCTTA 1134
||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 AGACGCAAATGATCAC-AGGTCCTGCCAAACGCAACCAATCGGAGGTGGGCCGCAGCTTA 1119
Query 1135 TCAAGAGATTGTTCTTCGGAAATAGATCTCAACACAAGTCAACATTCAGATATTGAGAAT 1194
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1120 TCAAGAGATTGTACTTCGGAAATAGATCTCAACACAAGTCAACAATCAGATATTGAGAAT 1179
Query 1195 TATAGCAACAAGAGCATGCTCGATGGCTCACTCACATATGACACTGAAATGTCTTGCGAA 1254
||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 1180 TATAGCAACAAGATCATGCTTGATGGCTCGTTCACATTTGACACTGAAATGTCTTGCGAA 1239
Query 1255 GAAGGAGGTGACGTTGGCACACGTTATGGCAGTGAACCAACCAGTGTTTGTGAAGATTGC 1314
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1240 CAAGGAGGTGACGTTGGCACACGTTATGGCAGCGAACCAACCAGCGTTTGTGAAGATTGC 1299
Query 1315 AGCACTAGCTGGTCAAATCAATGTGAAAATACAAGAGCTCTTCTTAGAATTAGATCCCAT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 AGCACTAGCTGGTCAAATCAATGTGAAAATACAAGAGCTCTTCTTAGAATTAGATCCCAT 1359
Query 1375 ATGAATAGTGAGGGGAATAAACGCAAAAGATGGTGTGGGCGTACTGCTGAAATGGATTGT 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 ATGAATAGTGAGGGGAATAAACGCAAAAGATGGTGTGGGCGTACTGCTGAAATGGATTGT 1419
Query 1435 CTTCCTCGTATTTCATTTGCCAATTCCGAGTCAGGCACAAACCCTATAGAGGACAAGTAT 1494
||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 1420 CTTCCTCGTCTTTCATTTGCCAGGTCCGAGTCAGGCACAAACCCTGTGGAGGACAAGTAT 1479
Query 1495 GAGATAGCGTTGGCACTGAAGGAATTGGTTAGCAGAGGAATGGCAGCAGAAGCAT-TTTC 1553
|||||||| |||||||||||||| |||||||||||||| |||||||||||||| | |||
Sbjct 1480 GAGATAGCCTTGGCACTGAAGGAGTTGGTTAGCAGAGGGATGGCAGCAGAAGC-TGTTTA 1538
Query 1554 CGAAATCAGCACCATGGATCCAGATTTTTTCACACAAAATCCGGGTTTACTTTTCCACCT 1613
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 1539 TGAAATCAGCACCATGGATCCAAATTTTTTCACACAAAATTCGGGTTTACTTTTCCATCT 1598
Query 1614 TAAGCAGGTCGAATTTCTGAAGCTGGTGAGTGCTGGTGATCACAATGGAGCCCTAAAGGT 1673
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1599 TAAGCAGGTTGAATTTCTGAAGCTGGTGAGTGCGGGTGATCACAATGGAGCTCTAAAGGT 1658
Query 1674 CGCATGCTTTCACTTAGGTCCCTTAGCCGCCAATGACCAGTCTTTACTGAAGACATTGAA 1733
||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1659 CGCGTGCTCTCACTTAGGTCCCTTAGCAGCCAATGACCAGTCTTTACTGAAGACATTGAA 1718
Query 1734 GGAGACTTTGTTAGTTTTACTCCAACCCGACGGAACCGCACCTGGGAAAGATTTGCCTTT 1793
||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||
Sbjct 1719 GGAGACTTTGTTAGTTTTACTCCAACCTGACGGAACCACACCTGGGAAAGATCTGCCTTT 1778
Query 1794 GAATGATCTGGCAAATACGCTACAGGTTTCTGTCGGTAATAGGCTCGGGATCGAAGAACC 1853
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 GAATGATCTGGCAAATATGCTACAGGTTTCTGTCGGTAATAGGCTCGGGATCGAAGAACC 1838
Query 1854 GAAGTTAATGAAAATAATCAAAGCGACGCTTCACACGCATACCGAGTGGTTTAAGCTTCA 1913
|||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1839 GAAGCTAATGAAAATAATAAAAGCGACGCTTCACACGCATACCGAGTGGTTCAAGCTTCA 1898
Query 1914 GATGTGTAAAGACCGGTTCAATAATCTCCTGAAGATAGATTCTTTGAAAGAAGTGAACAC 1973
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1899 GATGTGTAAAGACCGGTTCAATAATCTCCTGAAGATAGACTCTTTGAAAGAAGTGAACAC 1958
Query 1974 CGATTTGATTGGTGCTATTAAATCAAAATCAAAGAAAGATAGCAACACAAACTTGTCTTC 2033
|||||||| ||||||| ||||||| |||||| |||||||||||||| |||||||||||
Sbjct 1959 TGATTTGATAAGTGCTATCAAATCAAGATCAAATAAAGATAGCAACACCAACTTGTCTTC 2018
Query 2034 TCAAGTCACGACGACGTCTTCAAGCACCATGACATCAGAAGATGGTGGAAGCAGCAGCTT 2093
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2019 TCAAGTGACGACGACATCTTCAAGCACCATGACATCTGAAGATGGTGGAAGCAGCAGCTT 2078
Query 2094 GATGATGATGACTCAGACTTTGCCAAGAGAAGCTTTGTGGGAAGAAAGTGCAATTCTTAA 2153
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 2079 GATGATGATGACTCAGACTTCGCCAAGAGAAGCTTTGTGGGAAGAAAGTGCGATTCTTAA 2138
Query 2154 AGTAATGGAATTTCTGGCGATGCCGAGGTCTGATGCAATTCAACTGCTATCACAATACAA 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 AGTAATGGAATTTCTGGCGATGCCGAGGTCTGATGCAATTCAACTGCTATCACAATACAA 2198
Query 2214 TGGAGACGCTGAGGCTGTGATTCAGCAACTCTTTGGGTAAACCCAAA-CCAGACTAGACC 2272
|||||||||||||||||||||||||||||||||||| ||||| ||| ||| || |||
Sbjct 2199 TGGAGACGCTGAGGCTGTGATTCAGCAACTCTTTGGTTAAACTTAAAACCACACCGGACT 2258
Query 2273 -G-C-GTAGAACTGAACTGAGGCCGGTTTATTTTAATTTGGATGAGTTATTATTGGTTTA 2329
| | | || | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2259 AGACTG-AGTA--GAACTGAGGCCGGTTTATTTTAATTTGGATGAGTTATCATTGGTTTA 2315
Query 2330 TTCATTTCTGTATTTGTACATTAACTTTACACAGACACACTTGAGTAAAAGAAAATAAAT 2389
|||||||||| |||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 2316 TTCATTTCTGCATTTGTACATTAACTTTACACAGACACACTTGTGAAAAAGAAA-TAAAT 2374
Query 2390 A-GTTTTATCAATA 2402
| ||||||||||||
Sbjct 2375 AAGTTTTATCAATA 2388
> Ahg952195 jgi|Araly1|952195|scaffold_45000004.1
Length=227
Score = 233 bits (126), Expect = 4e-60
Identities = 152/165 (92%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 296 cttcttcttcatctccttctatttcctcttcttcttATCACTCCAGATTGATCATTCGCC 355
|||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 167 CTTCTTCTTCCTGTCCTTCTATTCCCTCTTCTTCTTATCACTCCAGATTGATCATTCGCC 108
Query 356 GGATCCGAAGCTCGATTGAATCCGGTGACATTGAAACCGCCATCGATATTCTTCGCTCCC 415
||||||||| |||| |||||| |||||||||||| ||||||||||| || ||| |||||
Sbjct 107 GGATCCGAAACTCGCTTGAATACGGTGACATTGAGACCGCCATCGACATCCTTTGCTCCT 48
Query 416 ACGCTCCTTTCGTCCTCGATGATCATCGGATTCTATTTCGCCTCC 460
|||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 47 ACGCTCCTTTCGTCCTCGATGATCATCGTATTCTATTTTGCCTCC 3
> Ahg939214 jgi|Araly1|939214|scaffold_503405.1
Length=227
Score = 233 bits (126), Expect = 4e-60
Identities = 152/165 (92%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 296 cttcttcttcatctccttctatttcctcttcttcttATCACTCCAGATTGATCATTCGCC 355
|||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 167 CTTCTTCTTCCTGTCCTTCTATTCCCTCTTCTTCTTATCACTCCAGATTGATCATTCGCC 108
Query 356 GGATCCGAAGCTCGATTGAATCCGGTGACATTGAAACCGCCATCGATATTCTTCGCTCCC 415
||||||||| |||| |||||| |||||||||||| ||||||||||| || ||| |||||
Sbjct 107 GGATCCGAAACTCGCTTGAATACGGTGACATTGAGACCGCCATCGACATCCTTTGCTCCT 48
Query 416 ACGCTCCTTTCGTCCTCGATGATCATCGGATTCTATTTCGCCTCC 460
|||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 47 ACGCTCCTTTCGTCCTCGATGATCATCGTATTCTATTTTGCCTCC 3
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91035685550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5