BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G66815.1

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951554 jgi|Araly1|951554|scaffold_803441.1                        529    9e-150


> Ahg951554 jgi|Araly1|951554|scaffold_803441.1
Length=358

 Score =  529 bits (286),  Expect = 9e-150
 Identities = 338/362 (93%), Gaps = 7/362 (2%)
 Strand=Plus/Plus

Query  84   tctcccatttttcttcCAATATAATGGAATCGTTTATGGGTCAAAAGAAAACATTGTACG  143
            |||||||||||||||||     ||||||||||| ||||||||||||||||||||||||||
Sbjct  3    TCTCCCATTTTTCTTCC-----AATGGAATCGTCTATGGGTCAAAAGAAAACATTGTACG  57

Query  144  CGTGTTATTTT-TTAATGTTGGTGttttttttAGGGTTCAATTGTGTCCATGGACGAACC  202
            | || |||||| |||||| ||||||||||| ||||||||||||| | |||||||||||||
Sbjct  58   CTTG-TATTTTCTTAATGATGGTGTTTTTTCTAGGGTTCAATTGCGGCCATGGACGAACC  116

Query  203  CTAAAAGTTGATGATAAGATTAATGGTGGTCATTATGATAGCAAGACGATGATGGCATTG  262
            ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||
Sbjct  117  CTAAAAGTTGATGATAAGATTGATGGTGGTCACGATGATAGCAAGACGATGATGGCATTG  176

Query  263  GCAAAGCACAATGATATGATGGTTGATGACAAGGCAATGCAGTTCTCGCCGccaccacca  322
            ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct  177  GCAAAGCACAATGTTATGATGGTTGATGACAAGACAGTGCAGTTCTCGCCGCCACCACCA  236

Query  323  ccaccaccGCCGTCACAATCGGGAGGTAAAGATGCTGAAGATTTCAGGCCTACAACGCCT  382
            |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || 
Sbjct  237  CCACCATCGCCGTCACAATCGGGAGGTAAAGAGGCTGAAGATTTCAGGCCTACAACCCCG  296

Query  383  GGCCACAGCCCTGGCATTGGCCATAGTTTATCCCATAATTGATCATTTTCATGCAATTTC  442
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  297  GGCCACAGCCCTGGCATTGGCCATAGTTTATCCCATAATTAATCATTTTCATGCAATTTC  356

Query  443  AC  444
            ||
Sbjct  357  AC  358



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18200215953


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5