BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66816.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951553 jgi|Araly1|951553|scaffold_803440.1 477 2e-134
> Ahg951553 jgi|Araly1|951553|scaffold_803440.1
Length=349
Score = 477 bits (258), Expect = 2e-134
Identities = 286/300 (95%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 1 ATGAAACTCTCAGTTTATATCATTCTTAGTATTCTCTTCATTTCGACGGTATTTTATGAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 23 ATGAAACTCTCAGTTTATATCATTCTTAGTATTCTCTTCATTTCGACGGTATTTTACAAA 82
Query 61 ATTCAGTTTACGGAGGCGAGACAGTTGCGAAAAACCGACGATCAAGATCATGATGATCAT 120
|| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| |
Sbjct 83 ATACAGTTTACCGAGGCGAGACAGTTGCGGAAAACCAACGATCAAGATCATGATGATCGT 142
Query 121 CATTTCACAGTCGGGTACACTGATGATTTTGGGCCTACTTCTCCTGGTAACAGCCCGGGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 143 CATTTCACAGTCGGGTACACTGATGATTTTGGGCCTACTTCTCCTGGTAACAGTCCAGGC 202
Query 181 ATTGGTCATAAGATGAAGGAGAATGAAGAAAATGCTGGAGGGTATAAAGATGACTTCGAA 240
|||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 203 ATTGGTCATAAGGTGAAGGAGGATGAAGAAAATGTTGAAGGGTATAAAGATGACTTCGAA 262
Query 241 CCTACGACGCCAGGACATAGTCCCGGCGTTGGACATGCTGTCAAGAACAATGAGCCTAAT 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 263 CCTACGACGCCAGGACATAGTCCCGGCGTTGGACATACTGTCAAGAACAATGAGCCTAAT 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5