BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66830.1 Length=1185 Score E Sequences producing significant alignments: (Bits) Value Ahg951548 jgi|Araly1|951548|scaffold_803435.1 366 2e-100 Ahg951549 jgi|Araly1|951549|scaffold_803436.1 204 1e-51 > Ahg951548 jgi|Araly1|951548|scaffold_803435.1 Length=233 Score = 366 bits (198), Expect = 2e-100 Identities = 212/219 (97%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 958 ATCACAGTGCTCGCCAAGGACATGCAAGGGATCAAGGCCAATTCCATCTACTTCTCCAAT 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCACAGTGCTCGCCAAGGACATGCAAGGGATCAAGGCCAATTCCATCTACTTCTCCAAT 60 Query 1018 CCTACTCCTTATTTTAAAGATCAATATGACGAAAACGAAATCTTCATATTCGACCTCGAT 1077 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 CCTACTCCTTATTTTCAAGATCAATATGACAAAAACGAAATCTTCATATTCGACCTCGAT 120 Query 1078 TCCAACACCGTTGAACAACCGCACCGATCTGTTTCCTCTTCCTTTCCCCGCTCTAGAGCC 1137 |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 121 TCCAACACGGTTGAACAACCGCACCGATGTGTTTCCTCTTCCTTTCCCCGCTCTAGATCC 180 Query 1138 CGATGGTTCTTGCCATGTTTCAAACGAGAATCATACTTC 1176 ||||||||||||||||||||||||||||||| || |||| Sbjct 181 CGATGGTTCTTGCCATGTTTCAAACGAGAATGATTCTTC 219 > Ahg951549 jgi|Araly1|951549|scaffold_803436.1 Length=294 Score = 204 bits (110), Expect = 1e-51 Identities = 191/229 (83%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 584 GTATCGAAGAGTGTTTTAGCATGGTTTTTAAGGATCACAAACTTTACTGTCTGAGCAATT 643 ||||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||| Sbjct 1 GTATCGAAGAGTGTTTTAGCATGGTTTTTAAGGATCATAAACTTTACTGTCTCAACTATT 60 Query 644 ATAAACTCAAGGTCTTCGATTTCTCTGGAGATATTCCGGTCAAAGTTTTCAAAACTAGCG 703 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 61 ATAAACTCAAGATCTTCGATTTCTCTGGAGATATTCCGGTCAAAGTTTTCACAACTTGCG 120 Query 704 TAAGTAAGTTG-TTAAATAATCCACTATGTATTTCCATGAGA----ATGAGACTTCCTGG 758 | ||| ||| | ||||| | |||| | | | | | | |||||||||||||| Sbjct 121 TTAGTGAGT-GCTTAAA-A--CCACGAGG-AGGAGGAGGTGGTTTTATGAGACTTCCTGG 175 Query 759 AATTCCAATGAAGGACCAGTTGAATCACTTCAAGGATGATATGGTAGTC 807 | ||||| |||| |||||||||| |||| |||||| ||||||| ||| Sbjct 176 ATTTCCAGTGAATGACCAGTTGAGTCACCGGAAGGATAATATGGTGGTC 224 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44222583720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5