BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G66830.1

Length=1185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951548 jgi|Araly1|951548|scaffold_803435.1                        366    2e-100
  Ahg951549 jgi|Araly1|951549|scaffold_803436.1                        204    1e-51 


> Ahg951548 jgi|Araly1|951548|scaffold_803435.1
Length=233

 Score =  366 bits (198),  Expect = 2e-100
 Identities = 212/219 (97%), Gaps = 0/219 (0%)
 Strand=Plus/Plus

Query  958   ATCACAGTGCTCGCCAAGGACATGCAAGGGATCAAGGCCAATTCCATCTACTTCTCCAAT  1017
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     ATCACAGTGCTCGCCAAGGACATGCAAGGGATCAAGGCCAATTCCATCTACTTCTCCAAT  60

Query  1018  CCTACTCCTTATTTTAAAGATCAATATGACGAAAACGAAATCTTCATATTCGACCTCGAT  1077
             ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  61    CCTACTCCTTATTTTCAAGATCAATATGACAAAAACGAAATCTTCATATTCGACCTCGAT  120

Query  1078  TCCAACACCGTTGAACAACCGCACCGATCTGTTTCCTCTTCCTTTCCCCGCTCTAGAGCC  1137
             |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct  121   TCCAACACGGTTGAACAACCGCACCGATGTGTTTCCTCTTCCTTTCCCCGCTCTAGATCC  180

Query  1138  CGATGGTTCTTGCCATGTTTCAAACGAGAATCATACTTC  1176
             ||||||||||||||||||||||||||||||| || ||||
Sbjct  181   CGATGGTTCTTGCCATGTTTCAAACGAGAATGATTCTTC  219


> Ahg951549 jgi|Araly1|951549|scaffold_803436.1
Length=294

 Score =  204 bits (110),  Expect = 1e-51
 Identities = 191/229 (83%), Gaps = 10/229 (4%)
 Strand=Plus/Plus

Query  584  GTATCGAAGAGTGTTTTAGCATGGTTTTTAAGGATCACAAACTTTACTGTCTGAGCAATT  643
            ||||||||||||||||||||||||||||||||||||| |||||||||||||| | | |||
Sbjct  1    GTATCGAAGAGTGTTTTAGCATGGTTTTTAAGGATCATAAACTTTACTGTCTCAACTATT  60

Query  644  ATAAACTCAAGGTCTTCGATTTCTCTGGAGATATTCCGGTCAAAGTTTTCAAAACTAGCG  703
            ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct  61   ATAAACTCAAGATCTTCGATTTCTCTGGAGATATTCCGGTCAAAGTTTTCACAACTTGCG  120

Query  704  TAAGTAAGTTG-TTAAATAATCCACTATGTATTTCCATGAGA----ATGAGACTTCCTGG  758
            | ||| ||| | ||||| |  |||| | | |     | | |     ||||||||||||||
Sbjct  121  TTAGTGAGT-GCTTAAA-A--CCACGAGG-AGGAGGAGGTGGTTTTATGAGACTTCCTGG  175

Query  759  AATTCCAATGAAGGACCAGTTGAATCACTTCAAGGATGATATGGTAGTC  807
            | ||||| |||| |||||||||| ||||   |||||| ||||||| |||
Sbjct  176  ATTTCCAGTGAATGACCAGTTGAGTCACCGGAAGGATAATATGGTGGTC  224



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44222583720


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5