BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66840.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918487 jgi|Araly1|918487|Al_scaffold_0008_3238 1797 0.0
> Ahg918487 jgi|Araly1|918487|Al_scaffold_0008_3238
Length=1665
Score = 1797 bits (973), Expect = 0.0
Identities = 1196/1294 (92%), Gaps = 54/1294 (4%)
Strand=Plus/Plus
Query 8 CGGCGGAGAAGGTAATCATTGATCTCTGTAGCTCGGAAGAGGAGGAAGAAGATGTTTTCG 67
||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 5 CGGAGGAGAAGGTAATCATTGATCTCTGTAGCTC---------GGAAGAAGATGTTTCCG 55
Query 68 GTGATGAGAATAACTATGACGAAACGGAAGAGGAAGAAGACGAAGATACGAATTCAAGTG 127
||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct 56 GTGATGAGAATAACTATGACGAAACGGAAGAAGAAGCCGAAGAAGATACGAATTCAAGTG 115
Query 128 AGGATGATAGCGATTGGAGCCACGACGATG---ATGATGCTACAGAGTCAGATGTTGAAG 184
||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct 116 AGGATGATAGCGATTGGAGCCACGATGATGATTATGATGCTACGGAGTCAGATGTTGAAG 175
Query 185 CTGACGAGATCGGAGTAAAAGGCGATAACGATGATGGTGATGAAGATGACAAAGTCACTC 244
||||||| | | | | || || || || |||| |||||| || |||||||||||||
Sbjct 176 CTGACGATA-CCG-G-----GGAGA-AA-GACGATGATGATGAGGACGACAAAGTCACTC 226
Query 245 GCCTCCTCACAGCCGGAAGCGATTTGAAATCTGTAAATGTGAAAGAGTGCAAAGCATATC 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 227 GCCTCCTCACAGCCGGAAGCGATTTGAAATCTGTGAATGTGAAAGAGTGCAAAGCATATC 286
Query 305 TGAGAAAGCATGGTCTAAGATTATCTGGCACCAAACCAGTTTGCATTGACAGAATTCTTG 364
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 287 TGAGAAAGCATGGTCTAAGATTATCTGGCACCAAACCAGTTTGTATTGACAGAATTGTTG 346
Query 365 AGCATTGGAGGATTAAAGATGGAA-CTGGAGAAGCAGTGTATCCAAAATCATCCTTTGCT 423
|||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 347 AGCATTGGAGGATTAAAGATGGAAGC-GGAGAAGCAGTGTATCCAAGATCATCCTTTGCT 405
Query 424 ATCAATTGTAAAGGTGATGTCTGCAAAGGAGACATTGTTTTGTTTACACAGAAGGTTCAC 483
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 406 ATCAATTGTAAAGGTGATGTCTGCAAAGGAGATATTGTTTTGTTTACACAGAAGGTTCAC 465
Query 484 CACAAGTATGAAAAGATGAAAAAGAGTGGAAATATTATGGGGAGAAGAACTGTCGCTGGC 543
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 466 CACAAGTACGAAAAGATGAAAAGGAGTGGAAATATTATGGGGAGAAGAACTGTCGCTGGC 525
Query 544 CAGGTTGTTAAAGAAAGCTATGGTACTGCTAAACAACAACACACGTTCACTATTGAAGTG 603
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 526 CAGGTTGTTAAAGAAAGCTATGGTACTGCTAAACAACAACACACTTTCACTATTGAAGTG 585
Query 604 CTCTGGTGTGAGGGGACACAGAAATTGCCACCTTTGTATCCATTACTAGTCAAAGGACGA 663
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 586 CTCTGGTGCGAGGGGACACAGAAATTGCCTCCTTTGTATCCATTACTAGTCAAAGGACGA 645
Query 664 AATCTTTATAGGTTAATGACCTTGAGGCAGCGATGGCCAAATGAAGAAGACAGAGTCAAA 723
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 646 AATCTTTATAGGTTAATGACCTTGAGGCAGCGATGGCCGAATGAAGAAGACAGAGTCAAA 705
Query 724 GTTCTTAACGAAAAGCATAACCGTGGTGCCGCAGCAAGAAAGGTTATGAGAGAAAGGAAA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GTTCTTAACGAAAAGCATAACCGTGGTGCCGCAGCAAGAAAGGTTATGAGAGAAAGGAAA 765
Query 784 ATTAAGTCAGGCTATGTACTAAAAGATGGAAGACTTCAAAAGCCTGGTCATGTGAAGAAG 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 ATTAAGTCAGGCTATGTACTAAAAGATGGAAGACTTCAAAAGCCTGGTCATGTGAAGAAG 825
Query 844 CCTTGTCAAGTAAAGACAAGAAAAAACGAGAAAGATGAGAATCTAACCCAGAGGCTTAGA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 CCTTGTCAAGTAAAGACAAGAAAAAACGAGAAAGATGAGAATCTAACCCAGAGGCTTAGA 885
Query 904 CAAAACACTCCCGCTAATCATTCACTTGTTGCTTTTCCAAACCAAAATCCTTCACAGGGC 963
|||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 886 CAAAACGCTCCAGCTAATCATTCACTTGATGCTTTTCCAAACCAAAATCCTTCACAGGGC 945
Query 964 CATAAGAATCATCCAACACAGTTGACAGATATGAATCCCGCTAATTTCTACACTTCTCGA 1023
|||||||||| | ||||||||||| | ||||||||||| | || || ||| |
Sbjct 946 CATAAGAATC--C-AACACAGTTGAGAAATATGAATCCC-C------CT-CA-TTC---A 990
Query 1024 CCACATGCTCCTCGTTCACATGCACCTCCTACATATGCTCCTCGACCACATGCTCCTCGT 1083
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 991 T-A--TGCTCCTCGTTCACATGCACCTCCTACATATGCTCCTCGACCACATGCTCCTC-T 1046
Query 1084 T-CGTACGCTCCTATCAATTCACATCTTCCTCGTCCAAATATTCCTCCTTATCATTCCTA 1142
| | ||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||
Sbjct 1047 TACATACGCTCCTATCAATTCACATCTTCCTCGTCCAAACATTTCTCCTTACCACCCCTA 1106
Query 1143 TACTTATTCAGA-ACAACAAAACCAAACAAACCAACGACCACCACCTGCCTCCTATACTT 1201
||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1107 TACTTATCCA-ACACAACAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTATACTT 1165
Query 1202 ATTCAACACAACAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTATACTTATCCAA 1261
|| ||||||| |||||||||| | | ||||||||||||||||||||||||||
Sbjct 1166 ATCCAACACAGCAAAACCAAAG--------G-CTACCACCTGCCTCCTATACTTATCCAA 1216
Query 1262 CACAGCAAAACCAAACAAACCAAAGACCACCACC 1295
||||||||||||||||||||||||||||||||||
Sbjct 1217 CACAGCAAAACCAAACAAACCAAAGACCACCACC 1250
Score = 750 bits (406), Expect = 0.0
Identities = 462/489 (94%), Gaps = 4/489 (1%)
Strand=Plus/Plus
Query 1170 AAACCAACGACCACCACCTGCCTCCTATACTTATTCAACACAACAAAACCAAACAAACCA 1229
||||||| | | |||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1179 AAACCAAAGGCTACCACCTGCCTCCTATACTTATCCAACACAGCAAAACCAAACAAACCA 1238
Query 1230 AAGACCACCACCTGCCTCCTATACTTATCCAACACAGCAAAACCAAACAAACCAAAGACC 1289
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1239 AAGACCACCACCTGCCTCCTATACTTATTCAACACAGCAAAACCAAACAAACCAAAGACC 1298
Query 1290 ACCACCAGCTTTCTACATCAGAAGAACTGCCTCTAATGCTCC-GCAGGGACAAGCATCAT 1348
||||||||||||||||| ||||||| ||||||||||||| || |||||||||||||||||
Sbjct 1299 ACCACCAGCTTTCTACAACAGAAGACCTGCCTCTAATGC-CCTGCAGGGACAAGCATCAT 1357
Query 1349 TCAACCCACATGTCAATACACACACTGTGCCGGTTACTCATCAGAGGAGACCATACCAGA 1408
|||| ||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1358 TCAATCCACATGCCAATACACACGCTGTGCCGATTACTCATCAGAGGAGACCATACCAGA 1417
Query 1409 ACCCCCATGTCAGCTCGAACAGTGGCTACAACCTGGGAGTGAGGGACTTGGAACACTTCT 1468
| | ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1418 ATCACCATGTCGGCTCGAACAGTGGCTACAACCTCGGAGTGAGGGACTTGGATCACTTCT 1477
Query 1469 CGCATATGATGATAAGCCACAGAAG-AGAAGGAGACACATACAGGCAGAGTGAGGTCACT 1527
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 1478 CGCATATGATGATAAGCCACAGA-GCAGAAGGAGACACATACAGGCAGAGTGAGGTCTCT 1536
Query 1528 CAAGGGCCATACATGAACCATCAGACCTACCATTCCAACTTCAATAGTAGCTACAACCAT 1587
||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1537 CAAGGACCATACATGAACCATCAGACCTACCATTCCAACTTCAGTAGTGGCTACAACCAT 1596
Query 1588 GGGGCAAGGGACTTGTACATGGTAAACAACAGAAGAGAAGGAGACAATCACAGACCAAAT 1647
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1597 GGGGCAAGGGACTTGTACATGGTAAACCACGGAAGAGAAGGAGACAATCACAGACCAAAT 1656
Query 1648 TATCGATAA 1656
|||||||||
Sbjct 1657 TATCGATAA 1665
Score = 159 bits (86), Expect = 4e-38
Identities = 99/105 (94%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 1138 TCCTATACTTATTCAGA-ACAACAAAACCAAACAAACCAACGACCACCACCTGCCTCCTA 1196
|||||||||||| || | ||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1201 TCCTATACTTATCCA-ACACAGCAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTA 1259
Query 1197 TACTTATTCAACACAACAAAACCAAACAAACCAAAGACCACCACC 1241
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 TACTTATTCAACACAGCAAAACCAAACAAACCAAAGACCACCACC 1304
Score = 150 bits (81), Expect = 3e-35
Identities = 83/84 (99%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 1193 CCTATACTTATTCAACACAACAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTATA 1252
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CCTATACTTATCCAACACAACAAAACCAAACAAACCAAAGACCACCACCTGCCTCCTATA 1162
Query 1253 CTTATCCAACACAGCAAAACCAAA 1276
||||||||||||||||||||||||
Sbjct 1163 CTTATCCAACACAGCAAAACCAAA 1186
Score = 86.1 bits (46), Expect = 8e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1247 CCTATACTTATCCAACACAGCAAAACCAAACAAACCAAAGACCACCACC 1295
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1103 CCTATACTTATCCAACACAACAAAACCAAACAAACCAAAGACCACCACC 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5