BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66850.1
Length=2674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496915 jgi|Araly1|496915|fgenesh2_kg.8__2731__AT5G66850.1 3814 0.0
> Ahg496915 jgi|Araly1|496915|fgenesh2_kg.8__2731__AT5G66850.1
Length=2598
Score = 3814 bits (2065), Expect = 0.0
Identities = 2320/2438 (95%), Gaps = 37/2438 (2%)
Strand=Plus/Plus
Query 1 ATTTCTGTTAAATCCGTTGGGTTC-TTCCATGGATCCTCATCGTCATCGCCTCCATCTCC 59
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1 ATTTCTGTTAAATCCGTTGGGTTCTTTCCATGGATCCTCATCGTCATCGCCACCATCTCC 60
Query 60 GtctttcttcttcttcttctGCTCGATTCTAATTC-CGTAAGAGAGAAAT-AAT--AAAG 115
| |||| || ||||| |||||||||||||||| || ||||||||||| ||| ||||
Sbjct 61 G----TCTT-TT-TTCTTGTGCTCGATTCTAATTCACGAAAGAGAGAAATAAATAAAAAG 114
Query 116 GATTCATGTTCACATCTTCTACCTGATGAGCATACCATGATTCTCTCGCTATGCGTTGGC 175
|||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 115 GATTCATGTTCAGATCTTCT-TCT-ATGAGCATACCATGATTCTCTCGCTATGCGTTGGC 172
Query 176 TTCCGCAAAtctcgttctcgtctccttcttcttctccatcttcttctctAAAACCCGTGG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TTCCGCAAATCTCGTTCTCGTCTCCTTCTTCTTCTCCATCTTCTTCTCTAAAACCCGTGG 232
Query 236 CTTCTTACTCTGAATCTCCGGATCCAGATCGTAATCAGGATCGGGATCGGTTTCATCGCC 295
||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 233 CTTCTTACTCTGAATCTGCAGATCCAGATCGTAATCAGGATCGGGATCGATTTCATCGCC 292
Query 296 GCTTGTTTCGTTTTAACCGTGGCAGGCTCACCCGTCAGCGGAAGCTTCGTCACTTGACGG 355
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 293 GCTTGTTTCGTTTTAACCGCGGCAGGCTCACCCGTCAGAGGAAGCTTCGTCACTTGACGG 352
Query 356 ATGACGATGTTTTGTTGGGAGAACGTCGTGCTTCTACCTCTTCCTCCACCTTCGATTCCG 415
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 353 ATGACGATGTTTTGTTGGGAGAACGTCGTGCTTCTACGTCTTCCTCCACCTTCGATTCCG 412
Query 416 GTTTAACTCGCTCTCCCAGCGCTTTCACCGCCGTTCCTCGCTCTCCTTCTGCCGTTCCCT 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 413 GTTTAACTCGCTCTCCCAGCGCTTTCACCGCCGTTCCTCGCTCTCCTTCTGCCGTTCCGT 472
Query 476 TACCCTTACCTCTCCCCTTACCGGAGGTCGCCGGGATTCGAAATGCCGCAAACGCTAGAG 535
|||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||| |||||
Sbjct 473 TACCGTTACCTCTCCCGTTACCGGAGGTCGCCGGGAATCGTAATGCCGGAAACGGTAGAG 532
Query 536 GATTGGATGACAGAGATCGAGATCCCGAGAGACTTATTTCTGATCGCACCTCTTCTGGTC 595
| |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 533 GGTTGGATGAGAGAGATCGAGATCCCGAGAGAGTTATTGCTGATCGCACCTCTTCTGGTC 592
Query 596 CTCCTCTCACCAGCGTCAATGGCGGCTTTGCCCGTGACTCGAGGAAAGCTACGGAGAATT 655
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 593 CTCCTCTCACCAGCGTCAATGGCGGCTTTGCCCGTGACTCGAGGAAAGCTACAGAGAATT 652
Query 656 CGTCATATCAAGATTTTAGTCCGAGAAACAGAAATGGTTATTGGGTGAATATTCCAACCA 715
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 653 CGTCATATCAAGATTTTAGTCCGAGAAACAGAAATGGTTATTGGGTGAACATTCCAACCA 712
Query 716 TGAGTGCACCAACGAGTCCATACATGAGTCCTGTGCCTAGTCCACAAAGGAAGAGTACTG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TGAGTGCACCAACGAGTCCATACATGAGTCCTGTGCCTAGTCCACAAAGGAAGAGTACTG 772
Query 776 GCCACGATTTGCCttttttttATTTGCCTCCTAAAAGCAATCAAGCTTGGTCTGCTCCAG 835
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 773 GACAAGATTTGCCTTTTTTTTATTTGCCTCCTAAAAGCAATCAAGCTTGGTCAGCTCCAG 832
Query 836 ATATGCCACTTGATACCTCTGGTCTTCCTCCTCCTGCATTTTATGATATTACTGCCTTTA 895
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 833 ATATGCCACTTGATACCTCTGGACTTCCTCCTCCTGCCTTTTATGATATTACTGCCTTTA 892
Query 896 GTACCGATAATTCTCCCATCCATAGTCCACAACCTCGGAGTCCACGGAAACAGATCAGAA 955
||||||||||||||||||| ||||||||||||||||||||||| || | |||||||||||
Sbjct 893 GTACCGATAATTCTCCCATTCATAGTCCACAACCTCGGAGTCCCCGCAGACAGATCAGAA 952
Query 956 GCCCACAACCTAGCAGACCATCTTCACCGTTG-----CATTCGGT----TGATAGCTCAG 1006
|||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 953 GCCCACAACCTAGCAGACCATCTTCACCGTTGCATTCCATTCTATCCCCTGATAGCTCAG 1012
Query 1007 CTCCACCGCGAGATAGTGTTTCCTCACCTTTGCATCCGAGGTTGTCTACTGATGTTACGA 1066
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1013 CTCCACCACGGGATAGTGTTTCCTCACCCTTGCATCCGAGGTTGTCTACTGATGTTACGA 1072
Query 1067 ATGGGCGACGTGATTGCTGCAATGTTCATCCTTTGCCTCTCCCTCCTGGAGCTACTTGTT 1126
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1073 ATGGGCGACGTGATAGCTGCAATGTTCATCCTTTGCCTCTCCCTCCTGGAGCTGCTTGTC 1132
Query 1127 CCTCTTCATCAGCTGCTTCTGTTCCGTCCCCGCAGGCTCCTCTCAAACTGGATTCATTCC 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 CCTCTTCATCAGCTGCTTCTGTTCCGTCCCCGCAGGCTCCTCTCAAACTGGATTCATTCC 1192
Query 1187 CAATGAATTCCCAGTGGAAGAAAGGGAAGCTAATAGGTCGTGGTACTTTTGGAAGTGTTT 1246
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CGATGAATTCCCAGTGGAAGAAAGGGAAGCTAATAGGTCGTGGTACTTTTGGAAGTGTTT 1252
Query 1247 ACGTTGCAAGCAACAGCGAAACTGGAGCATTGTGTGCGATGAAAGAAGTTGAGCTATTTC 1306
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ACGTTGCAAGCAACAGTGAAACTGGAGCATTGTGTGCGATGAAAGAAGTTGAGCTATTTC 1312
Query 1307 CTGATGACCCCAAATCCGCAGAGTGTATAAAGCAATTAGAGCAGGAGATCAAACTTCTAA 1366
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 CTGATGACCCGAAATCCGCCGAGTGTATAAAGCAATTAGAGCAGGAGATCAAACTTCTAA 1372
Query 1367 GTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAGTAGAAGATCGTT 1426
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1373 GTAACCTTCAACATCCAAACATTGTGCAGTACTTTGGTAGTGAGACAGTAGAAGATCGTT 1432
Query 1427 TCTTTATATACCTGGAATATGTTCACCCGGGTTCAATAAACAAATATATCCGTGATCATT 1486
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TCTTTATATACCTGGAGTATGTTCACCCGGGTTCAATAAACAAATATATCCGTGATCATT 1492
Query 1487 GCGGCACCATGACAGAATCTGTTGTTCGCAATTTTACTCGTCACATTTTGTCTGGGCTGG 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 GCGGCACCATGACAGAATCTGTTGTTCGCAATTTTACTCGTCACATTTTGTCTGGGCTGG 1552
Query 1547 CTTATTTGCACAATAAAAAGACTGTACATAGGGATATCAAAGGTGCTAATCTCCTTGTTG 1606
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1553 CTTATTTGCACAATAAAAAGACGGTCCATAGGGATATCAAAGGTGCTAATCTCCTTGTTG 1612
Query 1607 ATGCTTCTGGGGTTGTCAAGCTTGCTGATTTCGGCATGGCTAAACACCTTACTGGACAAA 1666
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1613 ATGCGTCTGGGGTTGTCAAGCTTGCTGACTTCGGCATGGCTAAACACCTTACCGGGCAAA 1672
Query 1667 GAGCTGATCTCTCGTTAAAGGGAAGCCCGTACTGGATGGCACCAGAGCTCATGCAAGCTG 1726
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GAGCCGATCTCTCGTTAAAGGGAAGCCCGTACTGGATGGCACCAGAGCTCATGCAAGCTG 1732
Query 1727 TGATGCAAAAAGATAGCAACCCAGATCTGGCTTTTGCTGTTGATATATGGAGTTTAGGAT 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 TGATGCAAAAAGATAGCAACCCAGATCTGGCTTTTGCTGTTGATATATGGAGTTTAGGAT 1792
Query 1787 GTACAATCATTGAGATGTTCACTGGGAAGCCTCCTTGGAGTGAGTTTGAAGGGGCTGCAG 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 GTACAATCATTGAGATGTTCACTGGGAAGCCTCCTTGGAGTGAGTTTGAAGGGGCTGCAG 1852
Query 1847 CTATGTTCAAGGTCATGAGAGATAGCCCACCGATACCTGAATCAATGTCACCTGAGGGTA 1906
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1853 CTATGTTCAAGGTCATGAGAGATAGCCCACCAATACCTGAATCAATGTCACCTGAGGGAA 1912
Query 1907 AAGACTTCCTGAGATTATGCTTCCAGAGAAACCCAGCTGAGCGACCAACCGCATCTATGT 1966
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 AAGACTTTCTGAGATTATGCTTCCAGAGAAACCCAGCTGAGCGACCAACCGCATCTATGT 1972
Query 1967 TGCTAGAACACCGGTTCCTAAAGAACTCTTTGCAACCAACCTCACCAAGCAACA--G-TG 2023
|||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1973 TGCTAGAACATCGGTTCCTAAAGAACTCTCTGCAACCAACCTCACCAAGCAACACCGATG 2032
Query 2024 A-T-G--T--CTCTCAATTATTTAATGGGATGAACATAACGGAACCAAGCAGTAGAAGGG 2077
| | | |||||| ||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 2033 TCTCGAATTGCTCTCAGTTAATTAACGGGATGAACATAACGGAACCAAGCAGTAGAAGAG 2092
Query 2078 AGAAGCCAAATTTCAAACTAGACCAGGTCCCGCGAGCTAGAAACATGACATCCTCAGAGA 2137
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2093 AGAAGCCAAATTTCAAACTAGACCAGGTCCCCCGAGCTAGAAATGTGACATCCTCAGAGA 2152
Query 2138 GTGAAAGTGGGCAACAGCAGCAGCAACAACAGTACCGGTCTCCCGATCTAACAGGAACC- 2196
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2153 GTGAAAGTGGGCAACAGCAGCAGCAACAACAGTACCGGTCTCCTGATCTAACAGGAACCA 2212
Query 2197 --GTGAACCGTCTGTCTCCTCGTTCCACTCTGGAGGCTATCCCAAGCCCGTGTCCTTCCC 2254
|||||||||||||||||||| |||||||| ||||| || |||||||||| ||||||||
Sbjct 2213 CCGTGAACCGTCTGTCTCCTCGATCCACTCTCGAGGCAATTCCAAGCCCGTCTCCTTCCC 2272
Query 2255 AACGACCTAAGCCCAGCAGCAGTGACAGGAGAAGAACGGGCGTCACTTCAGATCACCTTT 2314
|||||||||||||||||| | ||||||||||||||| ||| | ||||||||||||| |
Sbjct 2273 AACGACCTAAGCCCAGCA-C--TGACAGGAGAAGAACCTGCGCCTCTTCAGATCACCTAT 2329
Query 2315 GATTTGCAGCTCGAGAGGTTAACCAATAGAAGCTACTTCTATACGTATTCTTGTACACGT 2374
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2330 GATTTGCAGCTCGAGAGGTTAACCACTAGAAGCTACTTGTATACGTATTCTTGTACACGT 2389
Query 2375 AAGTGTATGTCAATGTACGTATTTAGAGTTTGGGGTCG 2412
||||||||||||||||||||||||||||||||||||||
Sbjct 2390 AAGTGTATGTCAATGTACGTATTTAGAGTTTGGGGTCG 2427
Score = 156 bits (84), Expect = 9e-37
Identities = 93/97 (96%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 2541 ttttttttGCTTGAGAGAGTTGTGTATAAATTA-TTTTAACGACGTCTTGTGTACCTTTG 2599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 2503 TTTTTTTTGCTTGAGAGAGTTGTGTATAAATTATTTTTAACGACGTCTTGTGTACATTTG 2562
Query 2600 GTTTCGGGTCTGTATCCACTTTTAGATTTAGATCCAT 2636
|||||||||||||||| | ||||||||||||||||||
Sbjct 2563 GTTTCGGGTCTGTATC-ATTTTTAGATTTAGATCCAT 2598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100862968760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5