BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66860.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951545 jgi|Araly1|951545|scaffold_803432.1 1199 0.0
> Ahg951545 jgi|Araly1|951545|scaffold_803432.1
Length=778
Score = 1199 bits (649), Expect = 0.0
Identities = 744/788 (94%), Gaps = 13/788 (2%)
Strand=Plus/Plus
Query 19 GAACTCTAAACCACACTGAGATGGCGAAATGGTGGCGAGGCCTGAGATCCGTGACGGCGG 78
||||||||||||||||||||||||||||||||||||| ||||||||| | | |
Sbjct 1 GAACTCTAAACCACACTGAGATGGCGAAATGGTGGCGTGGCCTGAGA----T--C--C-- 50
Query 79 AGGTGGCTGATCTTCCGGCTTCTTCATTCGGTCGATCGATTCGATGTATTCATCAGTATC 138
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 51 --GTGGCTGATCTGCCGGCGTCTTCATTCGGTCGATCGATTCGGTGTATTCATCAGTATC 108
Query 139 AGACGATCCAGGCGATTCCACGTGAAGCTACGGGTCGAGGAGTATCGGCTCGGGATCGGA 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 AGACGATCCAGGCGATTCCACGTGAAGCTACGGGTCGAGGAGTATCGGCTCGGGATCGGA 168
Query 199 CGATTGGTCGTATTCCCGCCGTCGTTTTCCCGCAATCGCTTCTAGATACTGATGCTTCGA 258
||||||| || ||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 169 CGATTGGCCGGATTCCCGCCGTGGTTTTCCCGCAATCGCTTCTTGAGACTGATGCTTCGA 228
Query 259 AGCGAGGCGTGTCGAGGAAGCAGCTATTGACGGCGGATAAGAAGCAGATCAAGTCTATTA 318
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 229 AGCGAGGCGTTTCGAGGAAGCAGCTATTGACGGCGGATAAGAAGCAGATTAAGTCTATTA 288
Query 319 TTGACTCTGTTGGTCTCCCATTCTTCTGTTCTACCACTTTCCAGCTTCAGATCCGAGCTG 378
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 289 TTGACTCTGTTGGTCTCCCATTCTTCTGTTCGACCACTTTCCAGCTTCAGATCCGAGCTG 348
Query 379 GTCAGGGTTCGTCGACGCTTGTTGAATCGGGTCGAGTACTTCCCCTCAAGGTTCATAGAG 438
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 349 GTCAGGGTTCTTCGACGCTTGTTGAATCGGGTCGAGTACTTCCCCTCAAGATTCATAGAG 408
Query 439 ACGAAGAAACTGGAAAGATACTTAATTTAGTATTCGTATGGGCTGATGATGGGGAGAAGT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ACGAAGAAACTGGAAAGATACTTAATTTAGTATTCGTATGGGCTGATGATGGGGAGAAGT 468
Query 499 TGAAGGTTGATGTTCCTGTTGTTTTCAAAGGGTTGGATCATTGTCCTGGTCTCCAGAAAG 558
||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 469 TGAAGGTTGATGTTCCTGTTGTTTTCAAAGGATTGGATAATTGTCCTGGTCTCAAGAAAG 528
Query 559 GGGGAAACCTGCGGACAATCCGAAGCACTCTGAAACTACTAGGGCCAGCTGAGCACATTC 618
|||||||||| ||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 529 GGGGAAACCTACGGTCAATCCGAAGCACTCTGAAACTACTAGGGCCAGCGGAACACATTC 588
Query 619 CATCTAAAATCGAAGTAGATGTGAGCAATCTGGACATTGAAGACAAAGTGTTATTGCAAG 678
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 589 CATCTAAAATCGAAGTAGATGTGAGCAAACTCGACATCGAAGACAAAGTGTTATTGCAAG 648
Query 679 ACGTTGTATTTCATCCATCATTGAAGCTACTGAGCAAGAATGAAACCATGCCCGTGTGTA 738
| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 649 AAGTTGTATTTCATCCATCACTAAAGCTACTGAGCAAGAATGAAACCATGCCTGTGTGTA 708
Query 739 AGATTGTCGCCACAAGCCCGGTGAAAGAACCAGAAGCTGTTCAAGCATAAAATAAGTCT- 797
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGATTGTCGCCGCTAGCCCGGTGAAAGAACCAGAAGCTGTTCAAGCATAAAATAAGTCCC 768
Query 798 TTGAAAAG 805
||||||||
Sbjct 769 TTGAAAAG 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5