BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66870.1
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496913 jgi|Araly1|496913|fgenesh2_kg.8__2729__AT5G66870.1 2082 0.0
> Ahg496913 jgi|Araly1|496913|fgenesh2_kg.8__2729__AT5G66870.1
Length=1665
Score = 2082 bits (1127), Expect = 0.0
Identities = 1432/1568 (91%), Gaps = 66/1568 (4%)
Strand=Plus/Plus
Query 8 tttttttCCCATTTTCTTCTTCTTGATGATCTTTTATTGATTCTCTCTTCGTTTTaaaaa 67
|||||||||||||||||||| ||| |||||||||||||| || |||||||||||| | ||
Sbjct 1 TTTTTTTCCCATTTTCTTCTCCTTCATGATCTTTTATTGGTTTTCTCTTCGTTTT-ATAA 59
Query 68 aaTCTTCAGCCTTAGGGCAGAATAAATCGGAGATCAGATCCAATAATCGGGTTTTTCTGG 127
||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||
Sbjct 60 AATCTTCAGCCTTAGGGCAGAATAAATCGTAGATCAGATCAAATAATAGGGTTTCTCTGG 119
Query 128 GTTTTCTCAGAAACCCTAGA-CCCGATAGTAACTTCCTACTCACTCAACCTATCTCTCTA 186
||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 120 GTTTTCTCAGAAACCATAGAGCCCGATAGTTACTTCCTACTCACTCAACCTATCTCGCTA 179
Query 187 TTGATCATGGAATCAAACGATGAAGAGAGTGAGACACGAAGCTAGCAACAA-AAATATCA 245
| ||||||| ||||||||||||| |||||||||| ||||||||||||| || ||| ||||
Sbjct 180 TCGATCATGAAATCAAACGATGAGGAGAGTGAGATACGAAGCTAGCAA-AACAAAGATCA 238
Query 246 TAAAGAGGGTTTTGGAAAGGAGAAAGATTCGTT-TTTAATTGAGGCTCTCAAGTCTGAAA 304
|| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 TAGAGAGGTTTTTGGAAAGGAGAAAGATTCGTTGTTTAATTGAGGCTCTCAAGTCT---- 294
Query 305 AGAGACaaaaaaaaTGGCGTCTTCAAGCTCTCCTTGCGCAGCTTGTAAATTCTTGAGAAG 364
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ---------AAAAATGGCGTCTTCAAGCTCTCCTTGCGCAGCTTGTAAATTCTTGAGAAG 345
Query 365 AAAATGCACACAAGAATGTGTATTCGCTCCATATTTCCCACCAGACCAACCTCAAAAATT 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 AAAATGCACACAAGAATGTGTATTCGCTCCATATTTCCCACCAGACCAACCTCAAAAATT 405
Query 425 CGCATTCGTTCACAAAGTCTTTGGAGCAAGTAACGTCGCTAAGCTTCTCAACGAGCTTGC 484
||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 406 CGCATACGCTCACAAAGTCTTTGGGGCAAGTAACGTGGCTAAGCTTCTCAACGAGCTTGC 465
Query 485 CTCTAACCAAAGAGAAGACGCAGTGAACTCTCTTTTCTACGAAGCTGAAGCTAGGTTACG 544
||||||||| |||||||||||||| |||||||| ||||||||||| |||||| | ||||
Sbjct 466 CTCTAACCATAGAGAAGACGCAGTAAACTCTCTATTCTACGAAGCAGAAGCTCGACTACG 525
Query 545 TGATCCGGTTTACGGTTGCGTCGGTTTAATCTCAATCCTTCAACATCGTCTTAAACAAG- 603
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 526 TGATCCGGTTTACGGTTGCGTCGGTTTAATCTCAATCCTTCAACACCGTCTTAAAC-AGC 584
Query 604 T-TAACCACGATCTTGAAAACGCTAAGAAAGAGCTCGCTACGTACGTTGGTCCTCAAGCT 662
| || || |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 585 TGCAA-CAAGATCTTGAAAACGCCAAGAAAGAGCTTGCTACGTACGTTGGTCCTCAAGCT 643
Query 663 ATGCTCCCAATTCT---------TCAACCGCATTTCATGTCTCTACCACCTCAACCGCAA 713
||||| || ||||| |||||||||||||||||||| ||| || |||||||||
Sbjct 644 ATGCTTCCTATTCTCCAACCGCCTCAACCGCATTTCATGTCTCCACCGCCGCAACCGCAA 703
Query 714 CGACCGTCTTCTTCTTCAGCGTCTGTGTTGACTCAGCATCATCATAACTTGTTGCCGATG 773
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 704 CGACCATCTTCTTCTTCAGCGTCTGTGTTGACTCAGCATCAACATAACTTGTTGCCAATG 763
Query 774 ATGGCTATTCCAACAGGACAACTGTACCATCAACAACAACAACAGATCTTTGAGGCTCAG 833
|||| ||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 764 ATGGGTATTCCAACCGGACAATTGTACCATCAACAGCAACAACAGATCTTTGAGGCTCAG 823
Query 834 CAGTTAGCAGCGGTTGCGAGAGAGCAACAGAATGAGATGTTTAGAGCTTATGGAGGAGGA 893
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 824 CAGTTAGCAGCGGTTGCGAGAGAGCAACAAAATGAGATGTTTAGAGCTTAT---GGAGGA 880
Query 894 GGAGGAAGTAGTAGTCCACACCATCAAAACCAAGCTCAAGCTGAGATTTTGAGGTTTAAT 953
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GGAGGAAGTAGTAGTCCACACCATCAAAACCAAGCTCAAGCTGAGATTTTGAGGTTTAAC 940
Query 954 AATGGTTTTGACTCTGTACCGGCCGGTTCAGTTACGGTTACTGGGTTTAATCAGTTAAGT 1013
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 AATGGGTTTGACTCTGTACCGGCCGGTTCAGTTACGGTTACTGGGTTTAATCAGTTAAGC 1000
Query 1014 TCTGGTGGTACAGCGGTAACCGGAATGTCTCTTGGAGGTAACTTTGTTGATAGTCCTTCG 1073
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TCCGGTGGTACAGCGGTAACCGGAATGTCTCTTGGAGGTAACTTTGTTGATAGTCCTTCG 1060
Query 1074 ACGAATAATAATTACCATACGGATCAGCAATTACACCATCATCATCAACCGCAACAACAT 1133
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1061 ACGAATAATAATTACCATACGGATCAGCAGTTACACCATCATCATCAACAGCAACAACAT 1120
Query 1134 CATGAGGCTCAACTATTCATACCTTCACAATCTTCTCAGCCGCTACCGCTCCAAACGCAG 1193
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1121 CATGAGGCTCAACTATTCATACCTACACAATCTTCTCAGCCGCTACCGCTTCAAACGCAG 1180
Query 1194 GAGACGCAAACGCAGACGCAGCCGAATTCGGAGAGCGAGGAGGGTAGAAGGAATGTCATT 1253
||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1181 GAGACGCAAACGCTGACGCAGCCGAATTCAGAGAGCGAGGAGGGTAGAAGGAGTGTCATT 1240
Query 1254 GGTTAATCTCGCTAATTGAGGAATAATAAAAAAGAGGGATACTAAAAACAAAGATACGGC 1313
|||||||||||||||||||||| |||||||||| || |||| | | |
Sbjct 1241 GGTTAATCTCGCTAATTGAGGAGTAATAAAAAA-AG--ATAC----------G----G-C 1282
Query 1314 CTTTGACCTTCTCGCTTGCTCGATAAACTCTCAAAACAA-TC-CCTAAGTTGGAAACTCT 1371
||||||||||||||||||||||||||||||| ||| ||| | |||||||||||||||||
Sbjct 1283 CTTTGACCTTCTCGCTTGCTCGATAAACTCT-AAA-CAAATTTCCTAAGTTGGAAACTCT 1340
Query 1372 GACTTTGCTCAAGGCATTATGGACGCAATCGAGTTTTTCTTTCTTCCTGATTTTGTCGG- 1430
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1341 GACTTTGCTCAAGGCATTATGGACGCAATCGAGTTTTTCTTTCTTCCTAATTTTGTCGGC 1400
Query 1431 ACGTCCAACAGCGAAAAGACACTCACCACGTAAAAGTCAAACGACTAACAAAGAAGTCAG 1490
| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1401 ATTTCCAAAAGCGAAAAGACACCCACCACGTAAAAGTCAAACGACTCACAAAGAAGTCAC 1460
Query 1491 C-TTATTTGGTTGATTTT-GAGTCCTGCAGACAGTTTTGGT-A----TA-AA-GTATAAA 1541
| |||||||||||||||| | |||| ||||||||||||||| | || || |||||||
Sbjct 1461 CGTTATTTGGTTGATTTTTGTGTCCCGCAGACAGTTTTGGTGACGAGTATAAAGTATAAA 1520
Query 1542 CCAAAGGC 1549
||||||||
Sbjct 1521 CCAAAGGC 1528
Score = 152 bits (82), Expect = 8e-36
Identities = 99/107 (93%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 1636 ttttttGACATTTCTTTTGGTTCAAGTaaaaaaaaGGAGAAATTAGTGTTTTTGGTTGCA 1695
|||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||
Sbjct 1561 TTTTTTGACATTTCTTTTGGTTTAAGT--AGAAAAGAAGAAATTAGTGTTTTTGGTTGCA 1618
Query 1696 AATCTATTTGTAAATTAGATGTCAAGAGAAGTGTTACTTGCCCTAGT 1742
||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 1619 AATCTATCTGTAAATTAGATGTCAAGAGAAGGGTTACTTGCCCGAGT 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65743762870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5