BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66880.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951543 jgi|Araly1|951543|scaffold_803430.1 1823 0.0
Ahg485399 jgi|Araly1|485399|fgenesh2_kg.5__1391__AT3G50500.1 1033 0.0
> Ahg951543 jgi|Araly1|951543|scaffold_803430.1
Length=1131
Score = 1823 bits (987), Expect = 0.0
Identities = 1071/1113 (96%), Gaps = 0/1113 (0%)
Strand=Plus/Plus
Query 122 TTTCTCTTTTTGTGATCAGAAATGGATCGAGCTCCGGTGACCACAGGACCGTTGGATATG 181
||||| |||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||
Sbjct 1 TTTCTTTTTTTGTGATCAGAGATGGATCGAGCTCCAGTGACAACAGGACCGCTGGATATG 60
Query 182 CCGATTATGCACGACAGTGATCGATATGACTTCGTTAAGGATATTGGTTCTGGTAATTTC 241
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAATTATGCACGACAGTGATCGATATGACTTCGTTAAGGATATTGGTTCTGGTAATTTT 120
Query 242 GGTGTTGCTCGTCTTATGAGAGATAAACTCACTAAAGAGCTTGTTGCTGTCAAGTACATC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTGTTGCTCGTCTTATGAGAGATAAACTCACTAAAGAGCTTGTTGCTGTCAAGTACATC 180
Query 302 GAGAGAGGAGACAAGATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTA 361
||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 181 GAGAGAGGAGACAAGATTGATGAGAATGTTCAAAGGGAAATAATTAACCACAGGTCGTTA 240
Query 362 AGGCATCCTAATATTGTCAGATTTAAAGAGGTCATTTTGACGCCGACTCATCTGGCTATC 421
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 AGGCATCCTAATATTGTCAGATTTAAAGAGGTCATTTTGACACCGACTCATCTGGCTATC 300
Query 422 ATAATGGAATATGCTTCTGGCGGTGAACTTTACGAGCGGATTTGCAATGCAGGACGGTTT 481
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 GTAATGGAATATGCTTCTGGCGGTGAACTTTACGAGCGGATTTGCATTGCAGGACGGTTT 360
Query 482 AGTGAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTCTATCTGGAGTCAGTTATTGTCAT 541
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 AGTGAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTATATCTGGAGTCAGTTATTGTCAT 420
Query 542 TCGATGCAAATTTGCCATCGTGACCTGAAGCTAGAGAATACATTGTTGGATGGAAGTCCT 601
| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 421 GCAATGCAAATTTGCCATCGCGACCTGAAGCTCGAGAATACATTGTTGGATGGGAGTCCT 480
Query 602 GCTCCTCGATTAAAAATTTGTGATTTTGGATATTCAAAGTCTTCTGTTCTTCATTCACAA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTCCTCGATTAAAAATTTGTGATTTTGGATATTCAAAGTCTTCTGTTCTTCATTCACAA 540
Query 662 CCAAAGTCAACTGTTGGTACTCCTGCATACATCGCTCCAGAGGTACTGCTTCGTCAGGAA 721
|||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 541 CCAAAGTCAACTGTCGGGACTCCTGCATACATCGCTCCGGAGGTTCTGCTTCGTCAGGAA 600
Query 722 TATGATGGCAAGATTGCAGATGTATGGTCATGTGGTGTGACCTTATACGTCATGTTGGTT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TATGATGGCAAGATTGCAGATGTATGGTCATGTGGTGTGACCTTATACGTCATGTTGGTT 660
Query 782 GGAGCGTATCCGTTCGAAGATCCAGAAGAGCCAAGAGACTATCGGAAAACAATACAGAGA 841
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 661 GGAGCTTATCCGTTCGAAGATCCAGATGAGCCTAGAGACTATCGGAAAACAATACAGAGA 720
Query 842 ATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGATATCACCTGAATGCTGTCAT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGATATCACCTGAATGCTGTCAT 780
Query 902 CTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACCAGAATAAGCATACCAGAGATCAAA 961
|| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 781 CTAATTTCAAGAATCTTTGTGGCTGATCCCGCTACTAGAATTAGCATTCCAGAGATCAAA 840
Query 962 ACCCATAGTTGGTTCTTGAAGAATCTCCCTGCTGATCTAATGAACGAGAGCAACACAGGA 1021
||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 841 ACCCATAATTGGTTCTTGAAGAATCTCCCAGCTGATCTACTGAACGAGAGCAACACAGGA 900
Query 1022 AGCCAGTTCCAGGAGCCTGAACAACCAATGCAAAGCCTTGACACAATCATGCAAATCATC 1081
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 AGCCAATTTCAGGAGCCTGAACAACCAATGCAGAGCCTTGACACAATCATGCAAATCATC 960
Query 1082 TCTGAAGCCACAATTCCCGCTGTTCGAAACCGTTGCCTAGACGATTTCATGACTGACAAT 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 TCTGAAGCCACAATTCCCGCTGTTCGAAACCGTTGCCTAGACGATTTCATGACAGACAAT 1020
Query 1142 CTTGATCTTGACGATGACATGGATGACTTTGACTCTGAATCTGAAATCGACATTGACAGT 1201
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1021 CTTGATCTTGACGATGACATGGATGACTTCGATTCTGAATCTGAAATCGACATTGACAGT 1080
Query 1202 AGCGGAGAGATAGTTTACGCTCTCTAATAAAAA 1234
|||||||||||||||||||||||||||||||||
Sbjct 1081 AGCGGAGAGATAGTTTACGCTCTCTAATAAAAA 1113
> Ahg485399 jgi|Araly1|485399|fgenesh2_kg.5__1391__AT3G50500.1
Length=1410
Score = 1033 bits (559), Expect = 0.0
Identities = 888/1050 (85%), Gaps = 10/1050 (1%)
Strand=Plus/Plus
Query 182 CCGATTATGCACGACAGTGATCGATATGACTTCGTTAAGGATATTGGTTCTGGTAATTTC 241
||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||
Sbjct 172 CCGATTATGCACGACAGTGATCGTTACGACTTCGTTAAAGATATTGGCTCTGGTAATTTC 231
Query 242 GGTGTTGCTCGTCTTATGAGAGATAAACTCACTAAAGAGCTTGTTGCTGTCAAGTACATC 301
|||||||||||||| |||| |||||| |||| || |||||||||||||| |||||||||
Sbjct 232 GGTGTTGCTCGTCTCATGACTGATAAAGTCACGAAGGAGCTTGTTGCTGTTAAGTACATC 291
Query 302 GAGAGAGGAGACAAGATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTA 361
||||||||||| |||||||||||||||||||| |||||||| ||||| || || ||| |
Sbjct 292 GAGAGAGGAGAAAAGATTGATGAAAATGTTCAGAGGGAGATTATTAATCATAGATCATTG 351
Query 362 AGGCATCCTAATATTGTCAGATTTAAAGAGGTCATTTTGACGCCGACTCATCTGGCTATC 421
|| ||||||||||||||||| ||||||||||| ||||||||||| || ||| |||||||
Sbjct 352 AGACATCCTAATATTGTCAGGTTTAAAGAGGTGATTTTGACGCCTACCCATTTGGCTATT 411
Query 422 ATAATGGAATATGCTTCTGGCGGTGAACTTTACGAGCGGATTTGCAATGCAGGACGGTTT 481
| |||||||||||| |||| || |||||||| ||||||||||| |||||| ||||||
Sbjct 412 GTTATGGAATATGCTGCTGGTGGAGAACTTTATGAGCGGATTTGTGTTGCAGGGCGGTTT 471
Query 482 AGTGAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTCTATCTGGAGTCAGTTATTGTCAT 541
|||||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||
Sbjct 472 AGTGAAGACGAGGCTCGGTTCTTCTTTCAGCAGCTTATATCTGGAGTTAGCTATTGTCAT 531
Query 542 TCGATGCAAATTTGCCATCGTGACCTGAAGCTAGAGAATACATTGTTGGATGGAAGTCCT 601
| |||||||| |||||||| || |||||||| || |||||||||||||| ||||||||
Sbjct 532 GCAATGCAAATATGCCATCGGGATCTGAAGCTGGAAAATACATTGTTGGACGGAAGTCCG 591
Query 602 GCTCCTCGATTAAAAATTTGTGATTTTGGATATTCAAAGTCTTCTGTTCTTCATTCACAA 661
|| ||||| || ||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 592 GCACCTCGTTTGAAAATATGTGATTTTGGATATTCCAAGTCTTCTGTTCTTCATTCCCAA 651
Query 662 CCAAAGTCAACTGTTGGTACTCCTGCATACATCGCTCCAGAGGTACTGCTTCGTCAGGAA 721
|||||||||||||||||||||||||| ||||| || |||||| | || ||||| ||||||
Sbjct 652 CCAAAGTCAACTGTTGGTACTCCTGCTTACATTGCACCAGAGATTCTTCTTCGACAGGAA 711
Query 722 TATGATGGCAAGATTGCAGATGTATGGTCATGTGGTGTGACCTTATACGTCATGTTGGTT 781
|||||||||||| |||||||||| |||||||| ||||| |||||||| || |||||||||
Sbjct 712 TATGATGGCAAGCTTGCAGATGTTTGGTCATGCGGTGTAACCTTATATGTAATGTTGGTT 771
Query 782 GGAGCGTATCCGTTCGAAGATCCAGAAGAGCCAAGAGACTATCGGAAA-ACAATACAGAG 840
||||| ||||| ||||| |||||| |||||||| |||| ||||| ||| |||||||| ||
Sbjct 772 GGAGCTTATCCATTCGAGGATCCACAAGAGCCACGAGATTATCG-AAAGACAATACAAAG 830
Query 841 AATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGATATCACCTGAATG-CTGTC 899
||| ||||| || | |||||| ||||| || ||| ||| | ||||| ||||| | | |
Sbjct 831 AATTCTTAGTGTCACATACTCGATCCCAGAGGACTTACACCTTTCACCAGAATGTC-GCC 889
Query 900 ATCTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACCAGAATAAGC-ATACCAGAGATC 958
| || || || || || |||||||| ||||| || || || || | | || || ||||||
Sbjct 890 ACCTAATATCGAGGATTTTCGTGGCCGATCCTGCAACAAGGATCA-CTATTCCGGAGATC 948
Query 959 AAAACCCATAGTTGGTTCTTGAAGAATCTCCCTGCTGATCTAATGAACGAGAGCA-ACAC 1017
| | || ||| ||||||||||||||||| || | |||| | ||| | |||| || | |
Sbjct 949 ACATCCGATAAATGGTTCTTGAAGAATCTTCCAGGTGATTTGATGGATGAGAACAGA-AT 1007
Query 1018 AGGAAGCCAGTTCCAGGAGCCTGAACAACCAATGCAAAGCCTTGACACAATCATGCAAAT 1077
|| || ||||| || |||||||| || || ||||| ||||||||||| || ||||| ||
Sbjct 1008 GGGTAGTCAGTTTCAAGAGCCTGAGCAGCCGATGCAGAGCCTTGACACGATTATGCAGAT 1067
Query 1078 CATCTCTGAAGCCACAATTCCCG-CTGTTCGAAACCGTTGCCTAGACGATTTCATGACTG 1136
|| || || || || ||||| | ||||||| || |||||||| || ||||||||| | |
Sbjct 1068 AATATCAGAGGCTACGATTCC-GACTGTTCGTAATCGTTGCCTTGATGATTTCATGGCGG 1126
Query 1137 ACAATCTTGATCTTGACGATGACATGGATGACTTTGACTCTGAATCTGAAATCGACATTG 1196
| ||||||||||| || |||||||||||||||||||| || |||||||| || || |||
Sbjct 1127 ATAATCTTGATCTAGATGATGACATGGATGACTTTGATTCCGAATCTGAGATTGATGTTG 1186
Query 1197 ACAGTAGCGGAGAGATAGTTTACGCTCTCT 1226
||||||| |||||||||||||| |||||||
Sbjct 1187 ACAGTAGTGGAGAGATAGTTTATGCTCTCT 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5