BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66890.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918482 jgi|Araly1|918482|Al_scaffold_0008_3233 1779 0.0
> Ahg918482 jgi|Araly1|918482|Al_scaffold_0008_3233
Length=1266
Score = 1779 bits (963), Expect = 0.0
Identities = 1170/1268 (92%), Gaps = 22/1268 (2%)
Strand=Plus/Plus
Query 1 ATGAATTCGA-ATTCGATTCAAAGCTTTGATGCCTTGCCCCACAATCTTCGAGAGTGTTT 59
||| |||||| | ||| | ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1 ATGGATTCGAGA-TCGGTCCAAAGCTTTGAAGCCTTGCCCCATAATCTTCGAGAGTGTTT 59
Query 60 CTTGGACATGGCCTCATTTCTTGAAGACCAAAGGATAATAGCTTCCA-CTATAATTGACT 118
|||||||||||||| |||||||||||||||||||||||| |||| || |||| |||||||
Sbjct 60 CTTGGACATGGCCTTATTTCTTGAAGACCAAAGGATAATTGCTT-CATCTATTATTGACT 118
Query 119 TATGGTCTGCATCATACGGTAAAGAG-G--------GTATGAATAACCTCCAAGATCTTG 169
|||||||||||| ||||||||||||| | |||||||| |||||||||||||||
Sbjct 119 TATGGTCTGCATTATACGGTAAAGAGAGCTTCATTTGTATGAATTACCTCCAAGATCTTG 178
Query 170 CCTCTCGCAATCTCCTTAAACTTCTTCCTATTGGGAGAAATGAGTATGAAGATGGTTTCT 229
|||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 179 CCTCCCACAATCTCCTTAAACTTCTTCCTCTTGGGAGAAATGAGTATGAAGATGGTTTCT 238
Query 230 ACAATGAGTTATTGGTTAAACAAGACAACGTCCTTAGAGAATTTGCTATAAATCAATGCC 289
||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 239 ACAGTGAGTTATTGGTTAAACAAGAAAACATCCTTAGAGAATTTGCTATAAATCAATGCG 298
Query 290 TAAAAGAGTCGTCTTCGATTTTCGAAAGGAAAAGATTAAACTTGGAGATACAAGATAACA 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 AAAAAGAGTCGTCTTCGATTTTCGAAAGGAAAAGATTAAACTTGGAGATACAAGAAAACA 358
Query 350 AATTCCCAAACTGGTGTTTAAATCCAAAACAACCTATTGTTATTAATGCATCTCTCTTTT 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 AATTCCCAAACTGGTGTTTAAATCCAAAACAACCTATTGTTATTAATGCATCTCTAATTT 418
Query 410 CTATCTCTACTGATGATTCATTTG---CATCAAGTTGGTTTGAAATGGATTGTCCAAATG 466
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 CTATCTCTACCGATGATTCATTTTTATCATCAAGTTGGTTTGAAATGGATTGTCCAAATG 478
Query 467 TTGAAGCTTTAGTTCTTAATATCTCTTCATCAAACTATGCATTACCAAACTTCATTGCTA 526
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 479 TTGAAGCTTTAGTTCTTAATCTCTCTTCATCAAACTATGCATTACCAAACTTCATTGCGA 538
Query 527 CTATGAAGGAATTGAAGGTTGTGATTATCATAAATCACGGTCTTGAGCCTGCAAAGTTGA 586
| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
Sbjct 539 CAATGAAGGAATTGAAGGTTGTGATAATCATAAATCATGGTCTTGATCCTGCAAAGTTAA 598
Query 587 CTAACTTGTCTTGTCTCAGCTCGTTACCAAACCTGAAACGGATCAGATTCGAGAAAGTTT 646
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 599 CCAACTTGTCTTGTCTCAGCTCTTTACCAAACCTGAAACGGATCAGATTCGAGAAAGTAT 658
Query 647 CAATCAGTTTGCTTGACATTCCCAAACTTGGTCTCAAGAGTCTTGAGAAGTTGTCCTTAT 706
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 CAATCATTTTGCTTGACATTCCCAAACTTGGTCTCAAGAGTCTTGAGAAGTTGTCTTTAT 718
Query 707 GGTTTTGTCACGTTGTTGATGCTCTCAACGAATTAGAAG--A-TG-T-TT-CTGAAACTT 760
|||| |||||| ||||||||| ||||||||||||||||| | || | || || ||||||
Sbjct 719 GGTTGTGTCACTTTGTTGATGTTCTCAACGAATTAGAAGTTAATGATGTTTCTAAAACTT 778
Query 761 TACAAAGTCTACAGGAAATCGAGATTGACTATTGCTACAATCTTGATGAATTACCATATT 820
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 779 TACAAAGTCTACAGGAAATCGAAATTGATTATTGCTATAATCTTGATGAATTACCATATT 838
Query 821 GGATCTCTCAAGTTGTTTCATTGAAGAAGCTTAGTGTCACAAATTGTAACAAGCTTTGCA 880
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 839 GGATCTCTCAAGTTGTTTCATTGAAGAAGCTTAGCGTTACAAATTGTAACAAGCTTTGTA 898
Query 881 GAGTCATAGAAGCTATAGGTGACTTAAGGGACCTTGAAACGCTGAGACTGAGTTCTTGTG 940
|| |||||||||||||||||||||| ||| | ||||||| | ||||||| |||||||||
Sbjct 899 GACTCATAGAAGCTATAGGTGACTTGAGGAATCTTGAAATGTTGAGACTTAGTTCTTGTA 958
Query 941 CTAGTCTCTTAGAGCTACCTGAAACGATTGACAGACTCGACAATTTGCGGTTTCTTGATG 1000
||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||
Sbjct 959 CTAGTCTCTTAGAACTGCCTGAAACGATTGATAGACTCAACAATTTGCGGTTTCTTGATG 1018
Query 1001 TTTCTGGTGGCTTCCAACTGAAAAACCTGCCTCTAGAAATTGGAAAGCTCAAGAAGCTTG 1060
||||||||||||||||| ||||||| || |||||||| |||||||||||| | |||||||
Sbjct 1019 TTTCTGGTGGCTTCCAATTGAAAAAACTACCTCTAGATATTGGAAAGCTCGACAAGCTTG 1078
Query 1061 AGAAGATTTCGATGAAAGATTGTTATCGATGCGAGTTACCGGATTCTGTGAAGAATCTAG 1120
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1079 AGAAAATTTCGATGAAAGATTGTTATCGATGCGAGTTACCGGATTCGGTGAAGAATCTAG 1138
Query 1121 AGAATCTGGAAGTGAAATGCGACGAAGATACTGCGTTCTTGTGGAAAATATTGAAACCAG 1180
||||||||| |||||||||| |||||| |||||||| |||||||||| ||||||||||
Sbjct 1139 CGAATCTGGAGGTGAAATGCGGCGAAGAGACTGCGTTGTTGTGGAAAAGATTGAAACCAA 1198
Query 1181 AAATGAAGAATCTGACGATCACAGAGGAAAAAACAGAACATAACCTCAACTTGCTTCAAC 1240
||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 1199 AAATGAAGAATCTAACGATCACAGAGGAAGAGACAGAACATAACCTCAACTTCCTTCAAC 1258
Query 1241 TGTTTTAA 1248
||||||||
Sbjct 1259 TGTTTTAA 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5