BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66900.1
Length=2628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496910 jgi|Araly1|496910|fgenesh2_kg.8__2726__AT5G66900.1 3620 0.0
Ahg951540 jgi|Araly1|951540|scaffold_803427.1 568 1e-160
> Ahg496910 jgi|Araly1|496910|fgenesh2_kg.8__2726__AT5G66900.1
Length=2442
Score = 3620 bits (1960), Expect = 0.0
Identities = 2292/2452 (93%), Gaps = 23/2452 (1%)
Strand=Plus/Plus
Query 25 TGAAAGAATGAACGATTGGGCTAGTTTGGGAATAGGTTCTATTGGGGAAGCTGTGTTTTC 84
||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||
Sbjct 1 TGAAAGAATGAACGATTGGGCTAGTTTGGGATTAGGTTCTATCGGGGGAGCTGTGTTTTC 60
Query 85 CAAGCTCCTGAAAGTTGTGATTGATGAAGCAAAAAAGTTCAAAGCTTTCAAACCCTTGTC 144
| ||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 61 CGAGCTCTTGAAACTTGTGATTGAAGAAGCAAAAAAGGTCAAAGCTTTCAAACCCTTGTC 120
Query 145 CAAGGATCTCGTATCAACAATGGAGATATTGTTTCCGTTAACTCAAAAGATTGATTCGAT 204
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CAAAGATCTCGTATCAACAATGGAGAGATTGTTTCCGTTAACTCAAAAGATTGATTCGAT 180
Query 205 GCAAAAAGAGCTTGACTTTGGTGTAAAGGAACTAAAGGAACTTAGGGATACGATCGAAAG 264
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 181 GCAAAAAGAGCTTGACTTTGGTGTAAAGGAACTTAAGGAACTGAGGGATACGATTGAAAG 240
Query 265 AGCTGATGTAGCTGTTCGGAAGTTTCCAAGAGTCAAGTGGTACGAGAAATCTAAATATAC 324
||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 AGCTGGTGTAGCTGTTCGAAAGTTTCCAAGCGTCAAGTGGTACGAGAAATCTAAATATAC 300
Query 325 TAGAAAAATTGAGAGAATCAATAAGGATATGCTTAAGTTCTGTCAGATTGATCTTCAGCT 384
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 TAGAAAAATTGAGAGAATCAATGAGGATATGCTTAAGTTCTGTCAGATTGATCTTCAGCT 360
Query 385 TCTTCAGCATAGGAATCAGTTGACGTTGTTGGGTTTGACGGGAAACCTTGTGAATTCGGT 444
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 TCTTCAGCATAGGAATCAGTTGACGTTGTTGGGTTTGACGGGAAATCTTGTGAATTCGGT 420
Query 445 TGATGGTTTAAGTAAAAGAATGGACCTTTTGAGTGTTCCTGCGCCTGTTTTTAGGGATCT 504
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 421 TGATGGTTTAAGTAAAAGGATGGATCTTTTGAGTGTTCATGCGCCTGTTTTTAGGGATCT 480
Query 505 TTGTTCGGTTCCCAAGCTTGATAAGGTTATTGTTGGATTGGATTGGCCATTGGGGGAGTT 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 TTGTTCGGTTCCCAAGCTTGATAAGGTTATTGTTGGATTGGATTGGCCATTGGGGGAGCT 540
Query 565 AAAGAAGAGACTCCTTGACGATTCTGTGGTTACTCTTGTGGTTTCTGCTCCTCCTGGTTG 624
||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||||
Sbjct 541 AAAGAAGAGACTCCTTGACAATTCCGTGGTTAGTCTCGTGGTTTCTGCTCCTCCTGGTTG 600
Query 625 CGGGAAAACCACGCTGGTTAGTCGGCTTTGTGACGATCCAGATATCAAAGGGAAGTTCAA 684
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGGGAAAACCACTCTGGTTAGTCGGCTTTGTGACGATCCAGATATCAAAGGGAAGTTCAA 660
Query 685 GCATATCTTCTTTAATGTTGTGTCAAATACTCCTAACTTTAGGGTAATAGTACAGAATTT 744
|||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 661 GCATATCTTCTTTAGTGTTGTGTCAAGTACTCCTAACTTTAAGGTCATAGTACAGAATTT 720
Query 745 ACTCCAGCACAACGGTTAC-AATGCACTTACATTTGAGAATGATTCTCAAGCAGAAGTTG 803
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 721 ACTCCAACACAACGGTTATGAA-GCACTTACATTTGAGAATGATTCTCAAGCAGAACTTG 779
Query 804 GCTTAAGAAAACTGCTGGAGGAACTTAAAGAAAATGGTCCTATATTG-TTGGTGTTGGAT 862
| |||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 780 GTTTAAGAAAACTGCTAGAGGAACTTAAAGAAAATGGTCCTATATTGGTTG-TCTTGGAT 838
Query 863 GATGTGTGGCGGGGAGCGGATTCTTTCCTTCAGAAATTTCAAATTAAGTTACCAAATTAT 922
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct 839 GATGTGTGGCGGGGAGCGGAGTCTTTACTTCAGAAATTTCAAATTAAATTACCGGATTAT 898
Query 923 AAGATTTTGGTGACTTCTCGGTTTGACTTTCCGAGTTTTGATTCCAATTATCGTTTGAAA 982
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 899 AAGATTTTGGTGACTTCTCGGTTTGACTTTCCGAGTTTTGGTTCCAGTTATCATTTGAAA 958
Query 983 CCTTTGGAAGATGATGATGCTAGAG-CCCTTCTCATTCATTGGGCATCGCGACCTTGTAA 1041
|||||||||||||| ||||| || | |||||||||||||||||||||||||||||| |||
Sbjct 959 CCTTTGGAAGATGAAGATGCCAG-GTCCCTTCTCATTCATTGGGCATCGCGACCTTCTAA 1017
Query 1042 CACGTCTCCTGATGAGTACGAAGATCTCCTCCAGAAGATATTGAAACGTTGCAATGGATT 1101
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 TGCGTCTCCAGATGAGTACGAAGATCTCCTCAAGAAGATATTGAAACGTTGCAATGGATT 1077
Query 1102 CCCAATCGTAATTGAAGTAGTGGGTGTTTCACTCAAAGGACGATCTCTAAATACATGGAA 1161
||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 1078 CCCAATCGTAATTGAAGTAGTCGGCGTTTCACTCAAAGGACAATCTCTAAATACATGGAA 1137
Query 1162 AGGTCAGGTGGAAAGCTGGTCTGAAGGGGAAAAAATTCTTGGTAAGCCTTATCCAACTGT 1221
||||||||||||||||||||| |||||||||| |||||| ||||| ||| ||||||||||
Sbjct 1138 AGGTCAGGTGGAAAGCTGGTCAGAAGGGGAAAGAATTCTAGGTAATCCTCATCCAACTGT 1197
Query 1222 GCTAGAATGTTTGCAGCCTAGTTTTGATGCTCTGGATCCCAACCTTAAGGAGTGCTTTTT 1281
||||||||||||||||||||| |||||||| ||||| |||||||||| ||||| ||| |
Sbjct 1198 GCTAGAATGTTTGCAGCCTAGCTTTGATGCCCTGGAAACCAACCTTAAAGAGTG-TTTCT 1256
Query 1282 -GGACATGGGCTCATTTCTTGAGGACCAAAAGATACGTGCTTCGGTAATAATTGATATGT 1340
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1257 CGGACATGGGCTCGTTTCTTGAGGACCAAAAGATACGTGCTTCAGTAATAATTGACATGT 1316
Query 1341 GGGTGGAATTATACGGTAAAGGTAGTAGTATCTTGTATATG---TACCTTGAAGACCTTG 1397
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1317 GGGTGGAATTATACGGTAAAGGTAGTAGTATCTTGTACATGAAGTACCTTGAAGACCTTG 1376
Query 1398 CCTCCCAGAATCTACTTAAACTTGTTCCTCTCGGCACAAATGAGCACGAAGACGGTTTCT 1457
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1377 CCTCCCAGAATCTGCTTAAACTTGTTCCTCTCGGCAGAAATGAGCACGAAGACGGTTTCT 1436
Query 1458 ACAATGACTTCTTAGTGACTCAACATGATATCCTTAGGGAGTTGGCTATCTGTCAAAGCG 1517
||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1437 ACAATGATTTCTTAGTCACTCAACATGATATCCTTAGGGAATTGGCTATCCGTCAAAGCG 1496
Query 1518 AATTTAA-GGAAAACTTAGAAAGAAAAAGACTAAATCTGGAGATACTAGAGAATACATTT 1576
|||| || ||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1497 AATT-AACGGAAAACATAGAAAGAAAAAGACTAAATTTGGAGATAAGAGAGAATACATTT 1555
Query 1577 CCAGACTGGTGTTTGAATACTATTAATGCCTCTTTATTGTCTATCTCTACGGATGATTTG 1636
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1556 CCAGACTGGTGTTTGAATACTATTAGTGCCTCTTTATTGTCTATCTCTACGGATGATTTG 1615
Query 1637 TTCTCATCGAAATGGTTGGAAATGGATTGCCCCAATGTTGAGGCTTTAGTTCTAAATCTC 1696
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1616 TTCTCATCGAATTGGTTGGAAATGGATTGCCCCAATGTTGAGGCTTTAGTTCTTAATGTA 1675
Query 1697 TCTTCATCAGACTATGCATTGCCAAGCTTCATCT-CTGGAATGAAGAAGCTGAAGGTTCT 1755
|||||||||||||||||||||||||||||||| | |||||||||||||||| || |||||
Sbjct 1676 TCTTCATCAGACTATGCATTGCCAAGCTTCAT-TGCTGGAATGAAGAAGCTAAAAGTTCT 1734
Query 1756 GACAATCACAAATCACGGTTTTTATCCAGCAAGATTGAGTAATTTCTCGTGTCTCAGCTC 1815
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1735 AACGATCACAAATCACGGTTTTTATCCAGCAAGATTGAGCAATTTCTCGTGTCTCAGCTC 1794
Query 1816 ATTACCAAACCTGAAACGGATTAGATTGGAAAAAGTTTCAATCACTTTGCTAGACATTCC 1875
|||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 1795 ATTACCAAACCTGAAACGGATTAGATTGGAGAAAGTTTCAGTCACTTTGCTGGACATTCC 1854
Query 1876 CCAACTGCAACTCAG-CAGTCTTAAGAAGCTGTCTTTGGTCATGTGTAGTTTCGGTGAGG 1934
|| | ||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1855 CCGATTGCAACT-AGGCAGTCTTAAGAAGCTATCTTTGGTCATGTGTAGTTTCGGTGAGG 1913
Query 1935 TTTTCTACGACACAGAAGATATAGTTGTCTCTAATGCTCTATCGAAATTACAAGAGATTG 1994
||||||| || |||||||| |||| ||||||||| || |||||||| |||||||||||||
Sbjct 1914 TTTTCTATGAGACAGAAGAAATAGATGTCTCTAAAGCACTATCGAATTTACAAGAGATTG 1973
Query 1995 ACATAGACTACTGCTATGATCTTGATGAGTTACCGTATTGGATCTCTGAAATTGTTTCAT 2054
|||||||||| ||||||||||||||||||||||| |||||| |||||||| |||||||||
Sbjct 1974 ACATAGACTATTGCTATGATCTTGATGAGTTACCTTATTGGGTCTCTGAAGTTGTTTCAT 2033
Query 2055 TGAAGACACTTAGCATCACAAACTGTAACAAGCTCTCT-CAACTTCCAGAAGCTATAGGC 2113
||||||| |||||||||||||||||||| ||||||||| || |||||||||| ||| |||
Sbjct 2034 TGAAGACCCTTAGCATCACAAACTGTAATAAGCTCTCTACA-CTTCCAGAAGATATGGGC 2092
Query 2114 AACTTGAGTAGACTAGAAGTGTTGAGGCTGTGTTCTTCTA-TGAATCTCTCTGAGCTGCC 2172
|||||||||| ||| ||| |||||||| ||||||||| || | |||||||||||| ||||
Sbjct 2093 AACTTGAGTAAACTGGAAATGTTGAGGTTGTGTTCTTGTAAT-AATCTCTCTGAGTTGCC 2151
Query 2173 TGAAGCGACTGAGGGACTCAGCAACTTGCGGTTTCTGGATATTTCTCATTGCTTAGGATT 2232
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 TGAAGCGACTGAGAGACTCAGCAACTTGCGGTTTCTGGATATTTCTCATTGCTTAGGATT 2211
Query 2233 GAGAAAGTTGCCTCAAGAGATTGGCAAACT-GCAGAATCTGAAAAAGATCTCGATGAGAA 2291
|||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||| |
Sbjct 2212 GAGAAAGTTGCCTCAAGAGATTGGCAAACTAG-AGAAGCTGAAAAAGATCTGGATGAGGA 2270
Query 2292 AGTGTTCGGGATGCGAGTTGCCGGAGTCAGTGACGAATCTAGAGAATCTGGAGGTCAAAT 2351
||| |||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2271 AGTATTCGGGATGCAAATTGCCGGATTCAGTGACGAATCTAGAGAATTTGGAGGTCAAAT 2330
Query 2352 GCGATGAAGAAACTGGATTGTTGTGGGAAAGGCTGAAGCCAAAAATGAGAAATTTGAGAG 2411
|||||||||||||||||| |||||||||| | |||||||||| |||| |||||||||||
Sbjct 2331 GCGATGAAGAAACTGGATCCTTGTGGGAAATGTTGAAGCCAAACATGATAAATTTGAGAG 2390
Query 2412 TTCAGGAGGAGGAAATAGAGCATAACCTGAACTTGCTTCAAATGTTTTAAGT 2463
|||| ||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 2391 TTCACAAGGAGGAAACAGAGCATAACCTGAACTGGCTTCAAACGTTTTAAGT 2442
> Ahg951540 jgi|Araly1|951540|scaffold_803427.1
Length=1963
Score = 568 bits (307), Expect = 1e-160
Identities = 436/498 (88%), Gaps = 10/498 (2%)
Strand=Plus/Plus
Query 1685 GTTCTAAATCTCTCTTCATCAGACTATGCATTGCCAAGCTTCATCT-CTGGAATGAAGAA 1743
||||| ||| | |||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1248 GTTCTTAATGTATCTTCATCAGACTATGCATTGCCAAGCTTCAT-TGCCGGAATGAAGAA 1306
Query 1744 GCTGAAGGTTCTGACAATCACAAATCACGGTTTT-TATCCAGCAAGATTGAGTAATTTCT 1802
|||||||||||| || |||||||||||||||||| | |||| ||||||| || |||||||
Sbjct 1307 GCTGAAGGTTCTAACTATCACAAATCACGGTTTTGT-TCCAACAAGATTAAGCAATTTCT 1365
Query 1803 CGTGTCTCAGCTCATTACCAAACCTGAAACGGATTAGATTGGAAAAAGTTTCAATCACTT 1862
||||| | |||||||||||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 1366 CGTGTTTGAGCTCATTACCAAATTTGAAACGGATTAGATTGGAGAAAGTTTCAGTCACTT 1425
Query 1863 TGCTAGACATTCCCCAACTGCAACTCAGCAGTCTTAAGAAGCTGTCTTTGGTCATGTGTA 1922
|||||||| |||||| | |||||||| |||||||||||||||| |||| | |||||||||
Sbjct 1426 TGCTAGACCTTCCCCGATTGCAACTCGGCAGTCTTAAGAAGCTATCTTCGCTCATGTGTA 1485
Query 1923 GTTTCGGTGAGGTTTTCTACGACACAGAAGATATAGTTGTCTCTAATGCTCTATCGAAAT 1982
||||||||||||||||||| | || ||||| |||| |||| |||| || ||||||| |
Sbjct 1486 GTTTCGGTGAGGTTTTCTATGGGACTGAAGAAATAGATGTCGCTAAAGCCCTATCGAGTT 1545
Query 1983 TACAAGAGATTGACATAGACTACTGCTATGATCTTGATGAGTTACCGTATTGGATCTCTG 2042
|||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||
Sbjct 1546 TACAAGAGATTGACATAGACTATTGCTATGATCTTCTTGAGTTACCTTATTGGGTCTCTG 1605
Query 2043 AAATTGTTTCATTGAAGACACTTAGCATCACAAACTGTAACAAGCTCTCTCA-ACTTCCA 2101
|| |||||||||||||||| |||||||||||||||||| | ||||||||| | |||||||
Sbjct 1606 AAGTTGTTTCATTGAAGACCCTTAGCATCACAAACTGTGATAAGCTCTCT-ATACTTCCA 1664
Query 2102 GAAGCTATAGGCAACTTGAGTAGACTAGAAGTGTTGAGG-CTGTGTTCTTCTA-TGAATC 2159
|||||| | ||||||||||||| ||| ||| |||||||| | ||||||| || | ||||
Sbjct 1665 GAAGCTTTGGGCAACTTGAGTAAACTGGAAATGTTGAGGTCA-TGTTCTTGTAAT-AATC 1722
Query 2160 TCTCTGAGCTGCCTGAAG 2177
|| ||||| ||||| |||
Sbjct 1723 TCACTGAGTTGCCTCAAG 1740
Score = 241 bits (130), Expect = 2e-62
Identities = 175/196 (89%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 2238 AGTTGCCTCAAGAGATTGGCAAACT-GCAGAATCTGAAAAAGATCTCGATGAGAAAGTGT 2296
||||||||||||||||||||||||| | |||| ||||||| ||||| |||||| |||| |
Sbjct 1729 AGTTGCCTCAAGAGATTGGCAAACTAG-AGAAGCTGAAAATGATCTGGATGAGGAAGTAT 1787
Query 2297 TCGGGATGCGAGTTGCCGGAGTCAGTGACGAATCTAGAGAATCTGGAGGTCAAATGCGAT 2356
|||||||| |||| ||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 1788 ACGGGATGCAAGTTACCGGATTCAGTGACGAACCTAGAGAATTTGGAGGTCAAATGCGAT 1847
Query 2357 GAAGAAACTGGATTGTTGTGGGAAAGGCTGAAGCCAAAAATGAGAAATTTGAGAGTT--C 2414
|||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||| |
Sbjct 1848 GAAGAAACTGGATTCTTGTGGGAAAGGTTGAAGCTAAAAATGATAAATTTGAGAGTTGTC 1907
Query 2415 AGGAGGAGGAAATAGA 2430
| |||||||||||||
Sbjct 1908 A--AGGAGGAAATAGA 1921
Score = 235 bits (127), Expect = 1e-60
Identities = 197/229 (86%), Gaps = 12/229 (5%)
Strand=Plus/Plus
Query 802 TGGCTTAAGAAAACTGCTGGAGGAACTTA-AAGAAAATGGTCCTATATTGTTGGTGTTGG 860
|||||||||| | |||||||||||||| | || || ||||||||||||||||||||||||
Sbjct 458 TGGCTTAAGAGATCTGCTGGAGGAACTCACAA-AAGATGGTCCTATATTGTTGGTGTTGG 516
Query 861 ATGATGTGTGGCGGGGAGCGGA-TTCTTTCCTTCAGAAATTTCAAATT-AAGTTACCAAA 918
||||||||||||| ||| | || ||||| | ||| ||||||||||||| || ||| ||
Sbjct 517 ATGATGTGTGGCGTGGATCAGAGTTCTTGC-TTCGGAAATTTCAAATTGAA-TTAG-AAG 573
Query 919 -TTATAAGATTTTGGTGACTTCTCGGTTTGACTTTCCGAGTTT-TGATTCCAATTATCGT 976
||||||||| |||||||||||||||||||||||| ||||||| || | ||| ||||| |
Sbjct 574 GTTATAAGATGTTGGTGACTTCTCGGTTTGACTTTTCGAGTTTATGGT-CCACTTATCAT 632
Query 977 TTG-AAACCTTTGGAAGATGATGATGCTAGAGCCCTTCTCATTCATTGG 1024
||| |||| |||| ||||||| ||||||| ||||||||||||||| |||
Sbjct 633 TTGGAAAC-TTTGAAAGATGAAGATGCTAAAGCCCTTCTCATTCAATGG 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99110817490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5