BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66910.1
Length=2677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496910 jgi|Araly1|496910|fgenesh2_kg.8__2726__AT5G66900.1 2122 0.0
Ahg951540 jgi|Araly1|951540|scaffold_803427.1 780 0.0
> Ahg496910 jgi|Araly1|496910|fgenesh2_kg.8__2726__AT5G66900.1
Length=2442
Score = 2122 bits (1149), Expect = 0.0
Identities = 1735/2007 (86%), Gaps = 84/2007 (4%)
Strand=Plus/Plus
Query 606 TTGTTCTGTTCCCAAGCTTGATAATATGGTTCTGGTTGGATTGGATTGGCCATTGGTGGA 665
|||||| ||||||||||||||| | | |||| | |||||||||||||||||||||| |||
Sbjct 481 TTGTTCGGTTCCCAAGCTTGAT-A-A-GGTTATTGTTGGATTGGATTGGCCATTGGGGGA 537
Query 666 GCTGAAGAAGAAACTCCTTGACAATTCCGT-G---GT-T-GTGGTGTCTGGTCCTCCTGG 719
||| ||||||| |||||||||||||||||| | || | ||||| |||| |||||||||
Sbjct 538 GCTAAAGAAGAGACTCCTTGACAATTCCGTGGTTAGTCTCGTGGTTTCTGCTCCTCCTGG 597
Query 720 TTGTGGGAAGACCACGCTGGTTACTAAGCTTTGTGACGACCCAGAGATCGAAGGAGAA-T 778
||| ||||| ||||| ||||||| | |||||||||||| ||||| ||| |||| ||| |
Sbjct 598 TTGCGGGAAAACCACTCTGGTTAGTCGGCTTTGTGACGATCCAGATATCAAAGG-GAAGT 656
Query 779 TCAAGAAAATCTTCTATAGCGTTGTGTCGAA-TACTCCTAA-TTTCAGGGCCATAGTACA 836
||||| | ||||||| ||| |||||||| || ||||||||| ||| | || |||||||||
Sbjct 657 TCAAGCATATCTTCTTTAGTGTTGTGTC-AAGTACTCCTAACTTT-AAGGTCATAGTACA 714
Query 837 AAACTTACTCCAGGACAACGGTTGCGGAGCAATTACATTTGACG-ATGATTCTCAAGCAG 895
|| |||||||| ||||||||| | |||| |||||||||| | |||||||||||||||
Sbjct 715 GAATTTACTCCAACACAACGGTTATGAAGCACTTACATTTGA-GAATGATTCTCAAGCAG 773
Query 896 AAAC-TGGCTTAAGAGATCTTCTGGAGGAACTCACAA-AAGATGGTCGTATATT-GTTGG 952
||| ||| |||||| | || || |||||||| | || || |||||| |||||| ||| |
Sbjct 774 -AACTTGGTTTAAGAAAACTGCTAGAGGAACTTA-AAGAAAATGGTCCTATATTGGTT-G 830
Query 953 TGTTGGATGATGTGTGGCAGGGATCCGAGTTC-TTGCTTCGA-AAATTTCAAATTGATTT 1010
| |||||||||||||||| |||| | ||| || || |||| | |||||||||||| | ||
Sbjct 831 TCTTGGATGATGTGTGGCGGGGAGCGGAG-TCTTTACTTC-AGAAATTTCAAATTAAATT 888
Query 1011 ACCAGATTATAAGATTTTGGTGACTTCTCAGTTTGATTTTACGAGTTTATGG-CCCACTT 1069
||| ||||||||||||||||||||||||| |||||| ||| ||||||| ||| ||| ||
Sbjct 889 ACCGGATTATAAGATTTTGGTGACTTCTCGGTTTGACTTTCCGAGTTT-TGGTTCCAGTT 947
Query 1070 ACCATTTGGTACCTTTGAAATATGAATATGCTAGGTCCCTTCTCATTCAGTGGGCATCTC 1129
| |||||| ||||||| || ||||| |||| ||||||||||||||||| |||||||| |
Sbjct 948 ATCATTTGAAACCTTTGGAAGATGAAGATGCCAGGTCCCTTCTCATTCATTGGGCATCGC 1007
Query 1130 CACC-TCTTCACACATCTCCAGATGAGTATGAAGATCTTCTCCAA-AAGATATTGAAACG 1187
||| || | | | |||||||||||||| |||||||| || ||| ||||||||||||||
Sbjct 1008 GACCTTC-TAATGCGTCTCCAGATGAGTACGAAGATCTCCT-CAAGAAGATATTGAAACG 1065
Query 1188 TTGCAATGGATTCCCTCTCGTAATTGAAGTAGTCGGCATTTCACTTAAAGGACAAGCTCT 1247
||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct 1066 TTGCAATGGATTCCCAATCGTAATTGAAGTAGTCGGCGTTTCACTCAAAGGACAATCTCT 1125
Query 1248 GTATTTATGGAAAGGTCAAGTGGAAAGCTGGTCTGAAGGGGAAACAATTCTTGGTAA-CG 1306
|| |||||||||||| |||||||||||||| |||||||||| |||||| ||||| |
Sbjct 1126 AAATACATGGAAAGGTCAGGTGGAAAGCTGGTCAGAAGGGGAAAGAATTCTAGGTAATC- 1184
Query 1307 CTAATCCTACTGTGCGACAACGTCTGCAGCCTAGCTTCAATGTCCT-GAAACCTCATCTT 1365
|| |||| ||||||| | || || ||||||||||||| ||| ||| |||||| | |||
Sbjct 1185 CTCATCCAACTGTGCTAGAATGTTTGCAGCCTAGCTTTGATGCCCTGGAAACC-AACCTT 1243
Query 1366 AAAGAGTGTTTCAT-GGACATGGGTTCATTTCTTCAGGACCAAAAGATACGTGCTTC-GC 1423
|||||||||||| | ||||||||| || |||||| |||||||||||||||||||||| |
Sbjct 1244 AAAGAGTGTTTC-TCGGACATGGGCTCGTTTCTTGAGGACCAAAAGATACGTGCTTCAG- 1301
Query 1424 TTATAATTGACATATGGATGGAATTATATGGTAGAGGTAGTTCTAGTACTAACAAGTTCA 1483
| ||||||||||| ||| |||||||||| |||| |||||| ||||| | | || ||
Sbjct 1302 TAATAATTGACATGTGGGTGGAATTATACGGTAAAGGTAG---TAGTA-T--CTTGTACA 1355
Query 1484 TGTTA-TACCTT-AATGAGCTTGCTTCCCAGAATCTGCTTAAACTTGTTCATCTCGGGAC 1541
|| | |||||| || || ||||| ||||||||||||||||||||||||| |||||| |
Sbjct 1356 TG-AAGTACCTTGAA-GACCTTGCCTCCCAGAATCTGCTTAAACTTGTTCCTCTCGGCAG 1413
Query 1542 AAATAAGCGCGAAGACGGTTTTTACAATGAGTTGTTAGTCACTCAACATAATATTCTGAG 1601
|||| ||| |||||||||||| |||||||| || ||||||||||||||| |||| || ||
Sbjct 1414 AAATGAGCACGAAGACGGTTTCTACAATGATTTCTTAGTCACTCAACATGATATCCTTAG 1473
Query 1602 GGAGTTGGCTATTTTTCAAAGTGAATTGGAAC--CAATCAT-GCAAAGAAAGAA-ACTAA 1657
||| |||||||| |||||| ||||| ||| || ||| | ||||||| || |||||
Sbjct 1474 GGAATTGGCTATCCGTCAAAGCGAATT--AACGGAAAACATAG-AAAGAAA-AAGACTAA 1529
Query 1658 ATTTGGAGATACGAGAGGACA-AC-TTTCCGGAC-GAGTGTTTAAATCAACCTATTAATG 1714
||||||||||| |||| || | || ||||| ||| | |||||| ||| | |||||| ||
Sbjct 1530 ATTTGGAGATAAGAGA-GA-ATACATTTCCAGACTG-GTGTTTGAAT--A-CTATTAGTG 1583
Query 1715 -CTCGACTT-TTGTCTATCTATACGGATGATTTGTTCTCATCGAAATGGTTGGAAATGGA 1772
||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1584 CCTC--TTTATTGTCTATCTCTACGGATGATTTGTTCTCATCGAATTGGTTGGAAATGGA 1641
Query 1773 TTGCCCCAATGTTGAGGCTTTAGTTCTTAATATCTCCTCATTAGACTATGCATTGCCAAG 1832
||||||||||||||||||||||||||||||| | || |||| ||||||||||||||||||
Sbjct 1642 TTGCCCCAATGTTGAGGCTTTAGTTCTTAATGTATCTTCATCAGACTATGCATTGCCAAG 1701
Query 1833 CTTCATTGCTGAAATGAAGAAGCTAAAGGTTCTGACAATCGCAAATCACGGTTTTTATCC 1892
||||||||||| ||||||||||||||| ||||| || ||| |||||||||||||||||||
Sbjct 1702 CTTCATTGCTGGAATGAAGAAGCTAAAAGTTCTAACGATCACAAATCACGGTTTTTATCC 1761
Query 1893 AGCAAGATTGAGTAATTTCTCGTGTCTCAGCTCATTACCAAACCTGAAACGGATTAGATT 1952
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 AGCAAGATTGAGCAATTTCTCGTGTCTCAGCTCATTACCAAACCTGAAACGGATTAGATT 1821
Query 1953 TGA-AAAGGTTTCAGTCACTTTGCTGGACATTCCTCAATTGCAACTCGGCAGTCTCAAGA 2011
|| ||| |||||||||||||||||||||||||| | ||||||||| |||||||| ||||
Sbjct 1822 GGAGAAA-GTTTCAGTCACTTTGCTGGACATTCCCCGATTGCAACTAGGCAGTCTTAAGA 1880
Query 2012 AGCTATCATTT-TTCATGTGTAGTTTCGGTGAGGTTTTCTACGACACAGAAGATATAGAT 2070
||||||| ||| |||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 1881 AGCTATC-TTTGGTCATGTGTAGTTTCGGTGAGGTTTTCTATGAGACAGAAGAAATAGAT 1939
Query 2071 GTCTCTAAAGCTCTATCGAATTTACAAGAGATTGACATAGACTACTGCTATGATCTTGAT 2130
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1940 GTCTCTAAAGCACTATCGAATTTACAAGAGATTGACATAGACTATTGCTATGATCTTGAT 1999
Query 2131 GAGTTACCATATTGGATCCCCGAAGTTGTTTCATTGAAGACACTTAGCATCACAAACTGT 2190
|||||||| |||||| || | |||||||||||||||||||| ||||||||||||||||||
Sbjct 2000 GAGTTACCTTATTGGGTCTCTGAAGTTGTTTCATTGAAGACCCTTAGCATCACAAACTGT 2059
Query 2191 AACAAGCTCTCTCA-ACTTCCAGAAGCTATAGGG-AACTTGAGTAGACTAGAAGTGTTGA 2248
|| ||||||||| | ||||||||||| ||| ||| |||||||||| ||| ||| ||||||
Sbjct 2060 AATAAGCTCTCT-ACACTTCCAGAAGATAT-GGGCAACTTGAGTAAACTGGAAATGTTGA 2117
Query 2249 GGATGTGTTCTTGT-ATGAATCTCTCTGAGCTGCCTGAAGCAACTGAGAGACTCAGCAAC 2307
|| ||||||||||| || |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 2118 GGTTGTGTTCTTGTAAT-AATCTCTCTGAGTTGCCTGAAGCGACTGAGAGACTCAGCAAC 2176
Query 2308 TTGCGGTCTCTGGATATTTCTCATTGCTTAGGATTGAGAAAGTTGCCTCAAGAGATTGGC 2367
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 TTGCGGTTTCTGGATATTTCTCATTGCTTAGGATTGAGAAAGTTGCCTCAAGAGATTGGC 2236
Query 2368 AAACTACAGAAACTGGAGAATATCTCGATGAGGAAGTGTTCGGGATGCGAGTTGCCGGAT 2427
|||||| |||| ||| | || |||| ||||||||||| |||||||||| | |||||||||
Sbjct 2237 AAACTAGAGAAGCTGAAAAAGATCTGGATGAGGAAGTATTCGGGATGCAAATTGCCGGAT 2296
Query 2428 TCAGTGAGGTATCTAGAGAATCTGGAGGTCAAATGCGATGAAGTAACTGGATTGTTGTGG 2487
||||||| | ||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 2297 TCAGTGACGAATCTAGAGAATTTGGAGGTCAAATGCGATGAAGAAACTGGATCCTTGTGG 2356
Query 2488 GAAAGGTTGATGCCAGAA-ATGAGAAATTTGAGAGTTCACACGGAGGAAACAGAGCATAA 2546
|||| ||||| |||| || |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2357 GAAATGTTGAAGCCA-AACATGATAAATTTGAGAGTTCACAAGGAGGAAACAGAGCATAA 2415
Query 2547 CCTGAAGTTGCTTCTAACGTTTTAAGT 2573
|||||| | ||||| ||||||||||||
Sbjct 2416 CCTGAACTGGCTTCAAACGTTTTAAGT 2442
> Ahg951540 jgi|Araly1|951540|scaffold_803427.1
Length=1963
Score = 780 bits (422), Expect = 0.0
Identities = 522/570 (92%), Gaps = 8/570 (1%)
Strand=Plus/Plus
Query 1176 GATATTGAAACGTTGCAATGGATTCCCTCTCGTAATTGAAGTAGTCGGCATTTCACTTAA 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GATATTGAAACGTTGCAATGGATTCCCTCTCGTAATTGAAGTAGTCGGCATTTCACTTAA 739
Query 1236 AGGACAAGCTCTGTATTTATGGAAAGGTCAAGTGGAAAGCTGGTCTGAAGGGGAAACAAT 1295
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 740 AGGACAAGCTCTGTATTTATGGAAAGGCCAAGTGGAAAGCTGGTCTGAAGGGGAAACAAT 799
Query 1296 TCTTGGTAACGCTAATCCTACTGTGCGACAACGTCTGCAGCCTAGCTTCAATGTCCTGAA 1355
||||||||||||| || ||| ||||| | |||||||| |||||||||| | || |||| |
Sbjct 800 TCTTGGTAACGCTCATACTAATGTGCTAGAACGTCTGAAGCCTAGCTTTAGTGCCCTGGA 859
Query 1356 ACCTCATCTTAAAGAGTGTTTCATGGACATGGGTTCATTTCTTCAGGACCAAAAGATACG 1415
||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 860 ACCCCATCTTAAAGAGTGTTTCTTGGACATGGGTTCATTTCTTGAGGACCAAAAGATACA 919
Query 1416 TGCTTCGCTTATAATTGACATATGGATGGAATTATATGGTAGAGGTAGTTCTAGTACTAA 1475
||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct 920 TGCTTCGCTTATAATTGACATATGGGTGGAATTATATGGAAGAGGTAGTACTAGTACTAA 979
Query 1476 CAAGTTCATGTTATACCTTAATGAGCTTGCTTCCCAGAATCTGCTTAAACTTGTTCATCT 1535
|| || |||| |||||||||||| |||||||||||||||||| |||||||||||| |||
Sbjct 980 CATGTACATGAAATACCTTAATGACCTTGCTTCCCAGAATCTGATTAAACTTGTTCCTCT 1039
Query 1536 CGGGACAAATAAGCGCGAAGACGGTTTTTACAATGAGTTGTTAGTCACTCAACATAATAT 1595
|||||||||| || ||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 1040 CGGGACAAATGAGTACGAAGACGGATTCTACAATGAGTTGTTAGTCACTCAACATGATAT 1099
Query 1596 TCTGAGGGAGTTGGCTATTTTTCAAAGTGAATTGGAACCAATCATGCAAAGAAAGAAACT 1655
||||||||||||||||||||||||||| ||| ||||||||||| || ||||||| |||||
Sbjct 1100 TCTGAGGGAGTTGGCTATTTTTCAAAGCGAACTGGAACCAATCCTGGAAAGAAAAAAACT 1159
Query 1656 AAATTTGGAGATACGAGAGGACAACTTTCCGGAC-GAGTGTTTAAA--T----CAACCTA 1708
|||||||||||||||||||||||||| ||||||| | |||||| || | |||||||
Sbjct 1160 AAATTTGGAGATACGAGAGGACAACTATCCGGACTG-GTGTTTGAACCTAAGGCAACCTA 1218
Query 1709 TTAATGCTCGACTTTTGTCTATCTATACGG 1738
|||||||||||||||||||||| | |||||
Sbjct 1219 TTAATGCTCGACTTTTGTCTATTTCTACGG 1248
Score = 551 bits (298), Expect = 1e-155
Identities = 435/500 (87%), Gaps = 14/500 (3%)
Strand=Plus/Plus
Query 1795 GTTCTTAATATCTCCTCATTAGACTATGCATTGCCAAGCTTCATTGCTGAAATGAAGAAG 1854
||||||||| | || |||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1248 GTTCTTAATGTATCTTCATCAGACTATGCATTGCCAAGCTTCATTGCCGGAATGAAGAAG 1307
Query 1855 CTAAAGGTTCTGACAATCGCAAATCACGGTTTT-TATCCAGCAAGATTGAGTAATTTCTC 1913
|| |||||||| || ||| |||||||||||||| | |||| ||||||| || ||||||||
Sbjct 1308 CTGAAGGTTCTAACTATCACAAATCACGGTTTTGT-TCCAACAAGATTAAGCAATTTCTC 1366
Query 1914 GTGTCTCAGCTCATTACCAAACCTGAAACGGATTAGATTTGA-AAAGGTTTCAGTCACTT 1972
|||| | |||||||||||||| |||||||||||||||| || |||| ||||||||||||
Sbjct 1367 GTGTTTGAGCTCATTACCAAATTTGAAACGGATTAGATTGGAGAAAG-TTTCAGTCACTT 1425
Query 1973 TGCTGGACATTCCTCAATTGCAACTCGGCAGTCTCAAGAAGCTATCATTTT-TCATGTGT 2031
|||| ||| |||| | |||||||||||||||||| ||||||||||| || ||||||||
Sbjct 1426 TGCTAGACCTTCCCCGATTGCAACTCGGCAGTCTTAAGAAGCTATC-TTCGCTCATGTGT 1484
Query 2032 AGTTTCGGTGAGGTTTTCTACGACACAGAAGATATAGATGTCTCTAAAGCTCTATCGAAT 2091
|||||||||||||||||||| | || ||||| ||||||||| ||||||| ||||||| |
Sbjct 1485 AGTTTCGGTGAGGTTTTCTATGGGACTGAAGAAATAGATGTCGCTAAAGCCCTATCGAGT 1544
Query 2092 TTACAAGAGATTGACATAGACTACTGCTATGATCTTGATGAGTTACCATATTGGATCCCC 2151
||||||||||||||||||||||| |||||||||||| ||||||||| |||||| || |
Sbjct 1545 TTACAAGAGATTGACATAGACTATTGCTATGATCTTCTTGAGTTACCTTATTGGGTCTCT 1604
Query 2152 GAAGTTGTTTCATTGAAGACACTTAGCATCACAAACTGTAACAAGCTCTCTCA-ACTTCC 2210
|||||||||||||||||||| |||||||||||||||||| | ||||||||| | ||||||
Sbjct 1605 GAAGTTGTTTCATTGAAGACCCTTAGCATCACAAACTGTGATAAGCTCTCT-ATACTTCC 1663
Query 2211 AGAAGCTATAGGG-AACTTGAGTAGACTAGAAGTGTTGAGGATG-TGTTCTTGTA-TGAA 2267
||||||| | ||| |||||||||| ||| ||| |||||||| | |||||||||| | ||
Sbjct 1664 AGAAGCTTT-GGGCAACTTGAGTAAACTGGAAATGTTGAGG-TCATGTTCTTGTAAT-AA 1720
Query 2268 TCTCTCTGAGCTGCCTGAAG 2287
|||| ||||| ||||| |||
Sbjct 1721 TCTCACTGAGTTGCCTCAAG 1740
Score = 470 bits (254), Expect = 3e-131
Identities = 403/469 (86%), Gaps = 33/469 (7%)
Strand=Plus/Plus
Query 293 TCGAATCGATGCAAGATGGTATGGAACTACAAGATCTTAAAGACACGATCGATAAAGCTC 352
|||||||| ||||||||| |||||||||||||||||||||||||| ||||| | ||||||
Sbjct 1 TCGAATCGTTGCAAGATGTTATGGAACTACAAGATCTTAAAGACATGATCGTTGAAGCTC 60
Query 353 TTTTACTGGTTGAGAAGTGTTCACATGTCGAGAAGTGGAATATAATCTTGAAATCGAAGT 412
|| || |||||||| ||||||||| | || |||||||||||||| |||||||||| ||||
Sbjct 61 TTGTAGTGGTTGAGGAGTGTTCACGTATCAAGAAGTGGAATATACTCTTGAAATCTAAGT 120
Query 413 ACACGAGAAAAGTTGAGGAAATCAATAGGAAGATGCTCAAGTTCTGTCAGGTTCAACTTC 472
|||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 121 ACACGACAAAAGTTGTGGAAATCAATAGGAAGATGTTCAAGTTCTGTCAGGTTCAACTAC 180
Query 473 AGCTTCTTCTCTTTAGGAACCAATTGAAGTCTATGCCTTCCATGGAAGCTATTCTTAACA 532
||||||||| |||||||||| || | || | || | ||||||
Sbjct 181 AGCTTCTTCAGTTTAGGAACC-----AA---T-TG-----C-----AG----T-TTAACA 216
Query 533 ATTATTTCCAAAACATCAATAAGAAGCTCGACCGTTTGAGTGGTTCTCCTGCTCCTC-CG 591
||||| |||| | |||||||||||||||||| | |||||||| ||||||| | |||| |
Sbjct 217 ATTATCTCCAGATCATCAATAAGAAGCTCGATCTTTTGAGTGTTTCTCCT-C-CCTCTC- 273
Query 592 CT-TGTT-TCGAAGCGTTGTTCTGTTCCCAAGCTTGATAATATGGTTCTGGTTGGATTGG 649
|| | || ||||||||||||||||||||||||| | ||||| |||||| ||||||||||
Sbjct 274 CTGTTTTCTCGAAGCGTTGTTCTGTTCCCAAGC-T--TAATACGGTTCTTGTTGGATTGG 330
Query 650 ATTGGCCATTGGTGGAGCTGAAGAAGAAACTCCTTGACAATTCCGTGGTTGTGGTGTCTG 709
||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 331 ATTGGCCATTGATGGAGCTGAAGAAGAAACTCCTTGGCAATTCAGTGGTTGTGGTGTCTG 390
Query 710 GTCCTCCTGGTTGTGGGAAGACCACGCTGGTTACTAAGCTTTGTGACGA 758
||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 391 GTCCTCCTGGTTGCGGGAAGACCACGCTGGTTACTCAGCTTTGTGACGA 439
Score = 291 bits (157), Expect = 2e-77
Identities = 208/232 (90%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 894 AGAAACTGGCTTAAGAGATCTTCTGGAGGAACTCACAAAAGATGGTCGTATATTGTTGGT 953
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 452 AGAAACTGGCTTAAGAGATCTGCTGGAGGAACTCACAAAAGATGGTCCTATATTGTTGGT 511
Query 954 GTTGGATGATGTGTGGCAG-GGATCCGAGTTCTTGCTTCGAAAATTTCAAATTGATTTAC 1012
||||||||||||||||| | ||||| |||||||||||||| |||||||||||||| |||
Sbjct 512 GTTGGATGATGTGTGGC-GTGGATCAGAGTTCTTGCTTCGGAAATTTCAAATTGAATTAG 570
Query 1013 CAGATTATAAGATTTTGGTGACTTCTCAGTTTGA-TTTTACGAGTTTATGGCCCACTTAC 1071
|| ||||||||| ||||||||||||| |||||| |||| ||||||||||| |||||||
Sbjct 571 AAGGTTATAAGATGTTGGTGACTTCTCGGTTTGACTTTT-CGAGTTTATGGTCCACTTAT 629
Query 1072 CATTTGGTACCTTTGAAATATGAATATGCTAG-GTCCCTTCTCATTCAGTGG 1122
||||||| | |||||||| ||||| |||||| | ||||||||||||| |||
Sbjct 630 CATTTGGAAACTTTGAAAGATGAAGATGCTAAAG-CCCTTCTCATTCAATGG 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100977239495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5