BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66930.3
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496906 jgi|Araly1|496906|fgenesh2_kg.8__2722__AT5G66930.2 1125 0.0
Ahg897532 jgi|Araly1|897532|Al_scaffold_0005_1498 276 2e-73
Ahg347207 jgi|Araly1|347207|fgenesh1_pg.C_scaffold_5000599 276 2e-73
> Ahg496906 jgi|Araly1|496906|fgenesh2_kg.8__2722__AT5G66930.2
Length=924
Score = 1125 bits (609), Expect = 0.0
Identities = 758/828 (92%), Gaps = 17/828 (2%)
Strand=Plus/Plus
Query 141 GGAAGTGGAATCCTTCGAGATACGCGAAGTTTTGCGCTGCATTCTACATACGATTGTCTT 200
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 105 GGAAGTGGAATCCTTCGAGATTCGCGAAGTTTTGCGCTGCATTCTACATACCATTGTCTT 164
Query 201 TCATCGTGCGCTTGGTCTTATCCGCCCTAAAGATATTGATTTGGAGCTTTTTGAGATCAC 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 TCATCGTGCGCTTGGTCTTATCCGCCCTAAAGATATTGATTTGGAGCTTTTTGAGATCAC 224
Query 261 TTATGTACAATGCGGTGAAATTGAAGTGGAGAAGAAAATCGATGAAAAGATTGAGCAGTT 320
|| |||||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||
Sbjct 225 ATACGTACAATGTGGTGAAATAGAAGTGGAAAAGAAAATTGATGAAAAGATTGAGCAATT 284
Query 321 CATTAACTGGATTGAGAAACACCCAAACAAAAAGAGTCAGATTTGTCTATCGTTCTATGA 380
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 285 CATAAACTGGATTGAGAAACACCCAAACAAGAAGAGTCAGATATGTCTATCGTTCTATGA 344
Query 381 AGTCAAAAGCAAACAGCCTTCTTGGTTCACCAA-AA--TCGAACGGTTGTACTGGGAACA 437
|||||||||||||||||| |||||||||||||| || | ||||| ||||||||||||||
Sbjct 345 AGTCAAAAGCAAACAGCCGTCTTGGTTCACCAACAAGATTGAACGCTTGTACTGGGAACA 404
Query 438 ATGGTACATCAATCTGAATGTGCTTCAGCCCACTAAGCCCCCTGTCGGAAAGTCTCACCA 497
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 405 ATGGTACATCAATCTGAATGTGCTTCAGCCCGCTAAGCCCCCAGTCGGAAAGTCTCACCA 464
Query 498 TTCTAAACTAGTTATGGACCCTGGAGAGGCATCGGAGGAGAGAAGTTCTCGTAGGACACT 557
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 465 TTCTAAACTAGTTATGGACCCTGGAGAGGCATCTGAGGAGAGAAGTTCTCGAAGGACACT 524
Query 558 GCTTGAGCAATCCCTTCAAGAAGTCTTGTTCCAAATCATAAAATTCGTGAATGAGAAGAA 617
||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 525 GCTTGAGCAGTCCCTTCAGGAAGTTTTATTCCAAATCATAAAATTCGTGAATGAGAAGAA 584
Query 618 GGATCATGTTCCTCCCATTAACGATGGTGTAATCTACTACCCTTTTGAGATCACTATCCC 677
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 585 GGATCACGTTCCTCCCATTAACGATGGTGTAATCTACTGCCCTTTTGAGATCACTATCCC 644
Query 678 AAGCTCATCGGACTCTGCCTTTGGGATGGATATGTTCAAGAGGATACTACACAGTGGCCA 737
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 645 AAGCTCATCGGACTCAGCCTTTGGGATGGATATGTTCAAGAGGATACTCCACAGTGGCCA 704
Query 738 TCCATCAATGCTCGGCTAAATTCCATTTTCCACTTAACTTAGTACATATACACTTTGATG 797
|||||| |||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 705 TCCATCGATGCTCGGCTAA-TTCCATTTTCCACTAAACTTAGTACATATACA-TTTGATG 762
Query 798 TT-TCTTGGTGCAGCCTAACTCCAATCAACACTTTCCTAGTTACATTTTCTGTGTAAATA 856
|| | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 763 TTAT-TTGGTGCAGCCTAACTCCAATCAACACATTCCTAGTTGCATTTTCTGTGTAAATA 821
Query 857 TATTATATGT-T-ACC-CTCT-CCTCGT-CGATGGATAATGTTACCTTATCTATGCTTTG 911
||| ||| | | | || | |||| | | | | | || | | | | | |||
Sbjct 822 TATAATAAAACTCAACACT-TGCCTCTTTCTCTCAACCCTCTTTC-TCAG--A-GTTTTA 876
Query 912 TTGTATATAAGTGATGTGTTGTATATAAATTTCAGACTTGCATTTCCT 959
||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct 877 TTGTAAATAAGTGATGCGTTGTATATAAATTTCTGACTTGCATTTCCT 924
> Ahg897532 jgi|Araly1|897532|Al_scaffold_0005_1498
Length=531
Score = 276 bits (149), Expect = 2e-73
Identities = 171/182 (94%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 181 ATTCTACATACGATTGTCTTTCATCGTGCGCTTGGTCTTATCCGCCCTAAAGATATTGAT 240
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 31 ATTCTACATACCATTGTCTTTCATCGTGCGCTTGGTCTTATCTGCCCTAAAGATATTGAT 90
Query 241 TTGGAGCTTTTTGAGATCACTTATGTACAATGCGGTGAAATTGAAGTGGAGAAGAAAATC 300
||||||||||||||||||||||| ||||||||| ||||||| |||||||| || |||||
Sbjct 91 TTGGAGCTTTTTGAGATCACTTACGTACAATGCAGTGAAATAGAAGTGGAAAATAAAATT 150
Query 301 GATGAAAAGATTGAGCAGTTCATTAACTGGATTGAGAAACACCCAAACAAAAAGAGTCAG 360
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 151 GATGAAAAGATTGAGCAATTCATAAACTGGATTGAGAAACACCCAAACAAGAAGAGTCAG 210
Query 361 AT 362
||
Sbjct 211 AT 212
> Ahg347207 jgi|Araly1|347207|fgenesh1_pg.C_scaffold_5000599
Length=537
Score = 276 bits (149), Expect = 2e-73
Identities = 171/182 (94%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 181 ATTCTACATACGATTGTCTTTCATCGTGCGCTTGGTCTTATCCGCCCTAAAGATATTGAT 240
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 31 ATTCTACATACCATTGTCTTTCATCGTGCGCTTGGTCTTATCTGCCCTAAAGATATTGAT 90
Query 241 TTGGAGCTTTTTGAGATCACTTATGTACAATGCGGTGAAATTGAAGTGGAGAAGAAAATC 300
||||||||||||||||||||||| ||||||||| ||||||| |||||||| || |||||
Sbjct 91 TTGGAGCTTTTTGAGATCACTTACGTACAATGCAGTGAAATAGAAGTGGAAAATAAAATT 150
Query 301 GATGAAAAGATTGAGCAGTTCATTAACTGGATTGAGAAACACCCAAACAAAAAGAGTCAG 360
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 151 GATGAAAAGATTGAGCAATTCATAAACTGGATTGAGAAACACCCAAACAAGAAGAGTCAG 210
Query 361 AT 362
||
Sbjct 211 AT 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35606804478
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5