BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66940.1
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951535 jgi|Araly1|951535|scaffold_803422.1 992 0.0
Ahg473910 jgi|Araly1|473910|fgenesh2_kg.1__3864__AT1G47655.1 152 3e-36
Ahg474883 jgi|Araly1|474883|fgenesh2_kg.2__13__AT1G64620.1 58.4 7e-08
> Ahg951535 jgi|Araly1|951535|scaffold_803422.1
Length=713
Score = 992 bits (537), Expect = 0.0
Identities = 632/678 (93%), Gaps = 6/678 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTCTGAATTCAGTGAATCTCGTCGGGTTCCTAAGATTCCCCACGGCCAAGGAGGA 60
|||||||||||||||||||||||||||||| |||||||| |||| ||||| | ||| |
Sbjct 21 ATGCCTTCTGAATTCAGTGAATCTCGTCGGATTCCTAAGCTTCCTCACGG-C--GGA-G- 75
Query 61 TCTGTTGCGATTCCGACGGATCAACAAGAGCAGCTTTCTTGTCCTCGCTGTGAATCAACC 120
|||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 76 -CTGTTGTGATTCCTACGGATCAACAAGAGCAGCTTCCTTGTCCTCGCTGTGAGTCAACC 134
Query 121 AACACCAAGTTCTGTTACTACAACAACTACAACTTCTCACAACCTCGTCATTTCTGCAAG 180
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 135 AACACCAAGTTCTGTTACTACAACAACTACAATTTCTCACAGCCTCGTCATTTCTGCAAG 194
Query 181 TCTTGTCGCCGTTACTGGACTCATGGAGGTACTCTCCGTGACATTCCCGTCGGTGGTGTT 240
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 195 TCTTGTCGCCGTTACTGGACTCACGGAGGTACTCTCCGTGACATTCCTGTCGGTGGTGTT 254
Query 241 TCCCGTAAAAGCTCAAAACGTTCCCGGACTTATTCCTCTGCCGCTACCACCTCCGTTGTC 300
||||| |||||||| |||||||||||||||| |||||| || ||||||||| ||||||||
Sbjct 255 TCCCGAAAAAGCTCTAAACGTTCCCGGACTTGTTCCTCCGCTGCTACCACCACCGTTGTC 314
Query 301 GGAAGCCGGAACTTTCCCTTACAAGCTACGCCTGTTCTTTTCCCTCAGTCGTCTTCCAAC 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 315 GGAAGCCGGAACTTTCCCTTACAAGCGACGCCTGTTCTTTTCCCTCAGTCGTCTTCCAAC 374
Query 361 GGCGGTATCACGACGGCGAAGGGAAGTGCTTCGTCGTTCTATGGCGGTTTCAGCTCTTTG 420
|||| || ||||||| |||||||| ||||||||| |||| |||||||||| |||||||
Sbjct 375 GGCGTTAGCACGACGTTGAAGGGAAACGCTTCGTCGCTCTACGGCGGTTTCACCTCTTTG 434
Query 421 ATCAACTACAACGCCGCCGTGAGCAGAAATGGGCCTGGTGGCGGGTTTAATGGGCCAGAT 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 435 ATCAACTACAACGCCGCCGTGAGCAGAAATGGGCCTGGTGGTGGGTTTAATGGGCCAGAT 494
Query 481 GCTTTTGGTCTTGGGCTTGGTCACGGGTCGTATTATGAGGACGTCAGATATGGGCAAGGA 540
| |||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct 495 GGTTTTGGACTTGGGCTTGGCCACGGGTCGTATTTTGATGACGTCAGATATGGGCAAGGA 554
Query 541 ATAACGGTCTGGCCGTTTTCAAGTGGCGCTACTGATGCTGCAACTACTACAAGCCACATT 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 555 ATAACGGTCTGGCCGTTTTCAAGTGGCGCTACTGATGCTGCAACTACTGCAAGCCACGTG 614
Query 601 GCTCAAATACCCGCCACGTGGCAGTTTGAAGGTCAAGAGAGCAAAGTCGGGTTCGTGTCT 660
||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 615 GCTCAAATACCCGCCCCGTGGCAGCTCGAAGGTCAAGAGAGCAAAGTCGGGTTCGTGTCT 674
Query 661 GGAGACTACGTAGCGTGA 678
||||||||| ||||||||
Sbjct 675 GGAGACTACTTAGCGTGA 692
> Ahg473910 jgi|Araly1|473910|fgenesh2_kg.1__3864__AT1G47655.1
Length=700
Score = 152 bits (82), Expect = 3e-36
Identities = 123/142 (87%), Gaps = 6/142 (4%)
Strand=Plus/Plus
Query 100 TGTCCTCGCTGTGAA-TCAACCAACACCAAGTTCTGTTACTACAACAACTACAA-CTT-C 156
||||||||||| || || |||| |||||||||||||||||||||||||||||| ||| |
Sbjct 155 TGTCCTCGCTG-CAACTCCACCACCACCAAGTTCTGTTACTACAACAACTACAATCTTGC 213
Query 157 TCACAACCTCGTCATTTCTGCAAGTCTTGTCGCCGTTACTGGACTCATGGAGGTACTCTC 216
||| |||||| | |||||||| ||||| ||||||||||||||||| || ||||| |||
Sbjct 214 TCAG--CCTCGTTACTTCTGCAAATCTTGCCGCCGTTACTGGACTCAAGGTGGTACACTC 271
Query 217 CGTGACATTCCCGTCGGTGGTG 238
|||||| | |||||||||||||
Sbjct 272 CGTGACGTCCCCGTCGGTGGTG 293
> Ahg474883 jgi|Araly1|474883|fgenesh2_kg.2__13__AT1G64620.1
Length=1571
Score = 58.4 bits (31), Expect = 7e-08
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 121 AACACCAAGTTCTGTTACTACAACAACTACA 151
|||||||||||||||||||||||||||||||
Sbjct 465 AACACCAAGTTCTGTTACTACAACAACTACA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24894264801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5