BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66950.1
Length=3258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496904 jgi|Araly1|496904|fgenesh2_kg.8__2720__AT5G66950.1 4785 0.0
Ahg944166 jgi|Araly1|944166|scaffold_700395.1 640 0.0
> Ahg496904 jgi|Araly1|496904|fgenesh2_kg.8__2720__AT5G66950.1
Length=3225
Score = 4785 bits (2591), Expect = 0.0
Identities = 2832/2947 (96%), Gaps = 21/2947 (1%)
Strand=Plus/Plus
Query 325 TGATTTTTGGTTTCTGGGTTCTGATTCTTTTGATCCGAGGTTTCCAAATTAGGGACC--T 382
||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||| |
Sbjct 284 TGA-TTTTGGTTTCTGGGTTCTGTTTCTTTTGATCCGAGGTTTCTAAATTTGGGACCTTT 342
Query 383 TTTT-CCCCAATTTGATTAGGGTTTC--AGATAAAAAGCCAAACTTTGGGAAAAATTAGG 439
|||| |||||||||||||||||||| ||| ||||| |||||||||| |||||||||||
Sbjct 343 TTTTGTCCCAATTTGATTAGGGTTTCAGAGAAAAAAAACCAAACTTTGAGAAAAATTAGG 402
Query 440 G-TTTGATGCATATCTCACTTTGGAAGCCAATTTACCACTGTGCTGCTGCTCTAGTACTA 498
| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 403 GATTTGATGCATATCTCACTTTGGAAGCCAATTTATCACTGTGCTGCTGCACTAGTACTA 462
Query 499 GACAAGAAGAGCAGTGGTAGTAGTAGCAGCAGCAGCAGGAATCGAGATGTGACTCAGCGG 558
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 463 GACAAGAAGAGCAGTGGTAGTAGT---AGCAGCAGCAGGAATCGAGATGTGACTCAGCGG 519
Query 559 AAACTCCATGAATCTAAGCTCAGGGAAGCTCTTGAACAAGCATCTGAAGATGGGTTACTC 618
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 520 AAACTCCATGAATCTAAGCTCAGGGAAGCTCTCGAACAAGCATCTGAAGATGGGTTACTC 579
Query 619 GTTAAATCTCAAGACATGGAAGAAGAAGATGAGTCTCAAGATCAAATTCTTGGACGGTCT 678
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 580 GTTAAATCTCAAGACATGGAAGAAGAAGACGAGTCTCAAGATCAAAGTCTTGGACGGTCT 639
Query 679 AGATCACTTGCTAGACTCAATGCTCAACGAGAGTTCTTGCGTGCTACATCACTCGCAGCT 738
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 640 AGATCACTCGCTAGACTCAACGCTCAACGAGAGTTCTTGCGTGCTACATCACTCGCAGCC 699
Query 739 CAAAGAGCATTTGAATCAGAAGAAACTTTACCTGAGCTTGAAGAAGCACTT-ACCATTTT 797
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||
Sbjct 700 CAAAGAGCATTTGAATCAGAAGAAACTTTACCTGAGCTTGAAGAAGCTCTTGA-CATGTT 758
Query 798 TCTGACCATGTATCCAAAGTATCAATCTTCTGAGAAAGTTGATGAATTGAGAAACGATGA 857
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 759 TCTGACCATGTATCCAAAGTATCAATCTTCTGAGAAAGTTGATGAATTGAGGAACGATGA 818
Query 858 GTATTTCCACTTATCATTACCAAAGGTATGTCTTGACTATTGTGGATTTGGGTTGTTCTC 917
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GTATTTCCACTTATCGTTACCAAAGGTATGTCTTGACTATTGTGGATTTGGGTTGTTCTC 878
Query 918 GTATCTTCAAACTGTTCATTACTGGGACACTTGCACTTTTAGTTTGTCGGAGATTAGTGC 977
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GTATCTTCAAACAGTTCATTACTGGGACACTTGCACTTTTAGTTTGTCGGAGATTAGTGC 938
Query 978 CAATCTAAGCAATCATGCTATATATGGTGGTGCTGAGAAAGGATCTATTGAACATGATAT 1037
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 939 CAATCTAAGCAATCATGCTATATACGGTGGTGCTGAGAAAGGATCTATTGAACATGATAT 998
Query 1038 CAAGATTAGGATAATGGACTACTTGAACATCCCTGAGAATGAGTATGGTCTTGTGTTCAC 1097
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CAAGATTAGGATAATGGATTACTTGAACATCCCTGAGAATGAGTATGGTCTTGTGTTCAC 1058
Query 1098 TGTTAGTAGAGGCTCTGCGTTCAAGTTGCTTGCAGAGTCTTATCCATTCCACACTAACAA 1157
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1059 TGTTAGTAGAGGTTCTGCGTTCAAGTTGCTTGCAGAGTCTTATCCATTCCACACAAACAA 1118
Query 1158 GAAGCTTCTGACTATGTTTGATCACGAGAGCCAATCGGTTAGTTGGATGGGTCAGTGTGC 1217
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1119 GAAGCTTCTGACTATGTTTGATCACGAGAGCCAGTCGGTTAGTTGGATGGGTCAGTGTGC 1178
Query 1218 GAAGGAGAAAGGTGCCAAGGTTGGTAGCGCCTGGTTTAAGTGGCCTACGCTTAGGCTGTG 1277
|||||||||||| || || |||||||||||||||||||||||||| || |||||||||||
Sbjct 1179 GAAGGAGAAAGGGGCAAAAGTTGGTAGCGCCTGGTTTAAGTGGCCCACACTTAGGCTGTG 1238
Query 1278 TTCAATGGATCTTAAGAAGGAGATTTTGAGTAAGAAGAAGAGGAAGAAGGATTCTGCAAC 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TTCAATGGATCTTAAGAAGGAGATTTTGAGTAAGAAGAAGAGGAAGAAGGATTCTGCAAC 1298
Query 1338 TGGTTTGTTTGTGTTTCCAGTACAATCAAGGGTCACGGGGTCTAAGTATTCTTACCAGTG 1397
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1299 TGGTTTGTTTGTGTTTCCAGTCCAATCAAGGGTCACGGGGTCTAAGTATTCTTACCAGTG 1358
Query 1398 GATGGCATTGGCTCAGCAAAACAACTGGCATGTCTTGCTTGATGCTGGTGCTTTAGGTCC 1457
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1359 GATGGCATTGGCTCAGCAAAACAACTGGCATGTCTTGCTTGACGCTGGTGCTTTGGGTCC 1418
Query 1458 AAAAGACATGGACTCGCTTGGATTGTCTTTGTTTCGACCGGATTTTATCATCACTTCGTT 1517
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1419 CAAAGACATGGACTCGCTTGGGTTGTCTTTGTTTCGACCCGATTTTATCATCACTTCGTT 1478
Query 1518 TTATCGTGTGTTTGGGTATGATCCAACTGGATTTGGTTGTCTGTTGATTAAGAAATCTGT 1577
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1479 TTATCGTGTGTTTGGGTATGATCCAACTGGATTTGGGTGTCTGTTGATTAAGAAATCTGT 1538
Query 1578 GATTAGCTGCTTGCAGAGTCAATCTGGGAAAACGAGTTCGGGAATTGTGAAGATAACACC 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 GATTAGCTGCTTGCAGAGTCAATCTGGGAAAACGAGTTCGGGAATTGTGAAGATAACACC 1598
Query 1638 TGAGTATCCTCTGTATCTAAGTGACTCCATGGATGGCTTGGAAGGTTTGACTGGGATTCA 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 TGAGTATCCTCTGTATCTAAGTGACTCCATGGATGGCTTGGAAGGTTTGACTGGGATTCA 1658
Query 1698 AGATAATGGCATTGCTATTAATGGAGATAATAAAGCCTTGGGAACTCAATTACCCGCATT 1757
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1659 AGATAATGATATTGCTATTAATGGAGATAATAAAGCCTTGGGAACTCAATTACCCGCTTT 1718
Query 1758 TTCCGGTGCATATACTTCTGCTCAGGTGCAGGATGTCTTTGAGACAGATATGGATCATGA 1817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 TTCCGGTGCATATACTTCTGCTCAGGTGCAGGATGTCTTTGAGACAGATATGGATCATGA 1778
Query 1818 AATTGGTTCTGATAGAGATAACACAAGCGCTGTGTTTGAGGAAGCTGAGAGTATCTCAGT 1877
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1779 AATTGGTTCTGATAGAGATAACACAGGCACTGTGTTTGAGGAAACTGAGAGTATCTCAGT 1838
Query 1878 GGGTGAATTGATTAAAAGTCCGGTTTTCAGCGAAGACGAGTCATCAGATAGCTCCCTCTG 1937
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1839 GGGTGAATTGATTAAAAGTCCGGTTTTCAGCGAAGACGAGTCATCGGATAGCTCGCTCTG 1898
Query 1938 GATTGATTTGGGTCAGAGTCCTGCTGATTCTGATAATGCAGGTCATCTGAACAAGCAAAA 1997
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1899 GATTGATTTGGGTCAGAGTCCTGCTGATTCTGATAATGCAGGTCCTCGGAACAAGCAAAA 1958
Query 1998 GAGCCCCTTACTGGTTCGAAAAAACCACAAACGAAGAAGCTCGCCTAAACCAGCTTCAAA 2057
||| ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1959 GAGTCCCTTACTGGTTCCCAAAAACCACAAACGAAGAATCTCGCCAAAACCAGCTTCAAA 2018
Query 2058 GGCTAATAATGGCAGCAACGGTGGGAGGCATGTTCTCTCTTTCGATGCTGCTGTTTTGTC 2117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 GGCTAATAATGGCAGCAACGGTGGGAGGCATGTTCTCTCTTTCGATGCTGCTGTTTTGTC 2078
Query 2118 AGTATCACATGAAGTGGGTGAAGAAGTCATAGAAGAAGAAAATTCTGAAATGAATCAGAT 2177
||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 2079 AGTATCACATGAAGTGGGTGACGAAGTCCCAGAAGAAGAAAAAACTGAAATGAATCAGAT 2138
Query 2178 AGACACAAGTCGTCGGTTGCGAGTTACTGAGATCGAAGAGGAAGAAGAAGAAGGAGGGAG 2237
|||||| |||| ||||||||| |||| |||||||||||| |||||||||||||| |||||
Sbjct 2139 AGACACCAGTCATCGGTTGCGGGTTAATGAGATCGAAGAAGAAGAAGAAGAAGGTGGGAG 2198
Query 2238 CAGTAAGCTAACTGC---T-C--ATGCAAATGGTTCGAGCTCTGGAATCAAAGACAGTGC 2291
||||||||||||||| | | ||| ||||||||||||||||||||||||||| |||||
Sbjct 2199 CAGTAAGCTAACTGCTAATGCAAATGGAAATGGTTCGAGCTCTGGAATCAAAGAGAGTGC 2258
Query 2292 GATAAGAAGAGAAACTGAAGGCGAATTTAGGCTGTTAGGAAGAAGGGAGAAGAGTCAGTA 2351
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2259 GATAAGAAGAGAAACCGAAGGTGAATTTAGGCTGTTAGGAAGAAGGGAGAAGAGTCAGTA 2318
Query 2352 CAATGGTGGGAGACTTCTTGTGAATGAAGATGAACATCCCAGTAAACGAAGAGTATCGTT 2411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2319 CAATGGTGGGAGACTTCTTGTGAATGAAGATGAACATCCCAGTAAACGAAGAGTATCGTT 2378
Query 2412 TAGATCAGTAGATCATGGAGAAGCATCTGTTATCAGTCTTGGGGATGAAGATGAAGAAGA 2471
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2379 TAGATCAGTAGATCATGGAGAAGCATCTGTTATCAGTCTTGGGGATGAAGATGAGGAAGA 2438
Query 2472 AGATGGAAGCAATGGAGTAGAATGGGATGATGATCAGAGAGAACCAGAGATTGTTTGCAG 2531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 AGATGGAAGCAATGGAGTAGAATGGGATGATGATCAGAGAGAACCAGAGATTGTTTGCAG 2498
Query 2532 GCACATTGATCATGTAAACATGTTGGGTCTCAACAAAACCACCTCAAGACTCCGGTACCT 2591
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2499 GCACATTGATCATGTAAACATGTTAGGTCTCAACAAAACCACCTCAAGACTCCGGTACCT 2558
Query 2592 CATTAACTGGCTTGTGACCTCTCTGCTCCAATTAAGGCTGCCTAGATCAGATTCAGATGG 2651
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2559 CATTAACTGGCTTGTGACCTCTCTGCTCCAGTTAAGGCTGCCTAAATCAGATTCAGATGG 2618
Query 2652 AGAGCACAAGAATCTTGTTCAGATTTACGGTCCAAAGATCAAATACGAGCGTGGATCTTC 2711
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2619 AGATCACAAGAATCTTGTTCAGATTTACGGTCCAAAGATCAAATACGAGCGTGGATCTTC 2678
Query 2712 CGTGGCATTCAATATCAGGGATTTGAAAAGTGGAATGGTTCATCCAGAGATAGTGCAGAA 2771
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2679 CGTGGCATTCAATGTCAGGGATTTGAAAAGTGGAATGGTTCATCCTGAGATAGTGCAGAA 2738
Query 2772 ACTAGCTGAAAGAGAAGGCATTTCTCTAGGAATTGGTTACCTAAGTCACATAAAGATCAT 2831
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 2739 ACTAGCTGAAAGAGAAGGCATATCTCTAGGCATTGGTTACCTCAGTCACATAAAGATCAT 2798
Query 2832 CGATAATCGAAGCGAAGATTCAAGTTCTTGGAAACCGGTGGATCGAGAAGGAAGAAACAA 2891
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2799 CGATAATCGAAGCGAAGATTCAAGTTCTTGGAAACCGGTAGATCGAGAGGGAAGAAACAA 2858
Query 2892 TGGGTTCATAAGAGTTGAGGTTGTCACAGCTTCTCTTGGGTTCTTGACAAACTTTGAAGA 2951
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2859 TGGTTTCATAAGAGTTGAGGTTGTCACAGCTTCTCTTGGGTTCTTGACAAACTTTGAAGA 2918
Query 2952 TGTTTACAGATTATGGAATTTCGTGGCCAAGTTCTTGAGTCCAGGTTTTGCTAAACAGGG 3011
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2919 TGTTTACAGATTATGGAATTTCGTGGCTAAGTTCTTGAGTCCAGGTTTTGCTAAACAGGG 2978
Query 3012 GACACTCCCAACAGTTATTGAAGAGGATGATTCGTCAGAAACTTAAAAGACATGAGCATT 3071
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 2979 GACACTCCCAACAGTTATTGAAGAAGATGATTCTTCAGAAACTTAAAAGACATGAGCAAT 3038
Query 3072 GGATATATTTTTTCCAGCACTTCCTTTACTGTACTTATATGTTATTATC--C-GAGAACA 3128
||||| |||||||||| ||||||||||||||||||||| ||||||||| | |||| |
Sbjct 3039 GGATACATTTTTTCCAACACTTCCTTTACTGTACTTATTTGTTATTATTATCTGAGATGA 3098
Query 3129 TTTTCTTGTATGATTTTGGGAAGTTATGTGAGCAGAGATGATCTCAGACACGATTTCAGA 3188
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3099 TTCTCTTGTATGATTTTGGGAAGTTGTGTGAGCAGAGATGATCTCAGACACGATTTCAGA 3158
Query 3189 TGTCTGCATATTGTAACTGTTCATCTCTCTTCTATCTTTGTGTTGCACAATTCATTGATT 3248
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3159 TGTCTGCATATTGTAACTGTTCATCTCTCTTCTATCTTTGTGTCACACAATTCATTGATT 3218
Query 3249 CATATCC 3255
|||||||
Sbjct 3219 CATATCC 3225
Score = 366 bits (198), Expect = 5e-100
Identities = 267/297 (90%), Gaps = 18/297 (6%)
Strand=Plus/Plus
Query 1 AGATTATCAAACCAGAGTCAGAGAGATTATCGCTCAGAATTTGCTCTGTTTTGTTGTTGC 60
|||||||||||||| || |||||||||||||||||||||||||||||| | ||| |
Sbjct 1 AGATTATCAAACCAAAGACAGAGAGATTATCGCTCAGAATTTGCTCTG---TATTG-T-- 54
Query 61 TGTTGCTTTGATGTGAAAAGGAG-TATCTATTTTCTCTTAAGTTTGGTGAGACGAAGAAC 119
|||| |||||||||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct 55 TGTTACTTTGATGTGAAAAGGAGTTA-CAATTTTCTCTTAAGTTTGGTGAGACGAAGAAC 113
Query 120 ATGAAGCTTCTCTGTGTTTCTCA---GATTTTCTTTTGAGCtttttttt-----GGGATT 171
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 114 ATGAAGCTTCTCTGTGTTTCTCATCAGATTTTCTTTTGAGTTTTTTTTTTTTTAGGGATT 173
Query 172 TGAGTCTCTTTGCTTGGTTTGTCTGTTCAAGATGGGACAAAGGTTTTGACTTTTTTGATA 231
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 174 TGGGTCTCTTTGCTTGGTTTGTCTGTTCAAGATGGGACCAAGGTTTTGACTTTTT-GATT 232
Query 232 -TCTCTTACCGAATTGTTCAAGCTTTGAttttttttACTTGATCTGGGATTTGATTT 287
||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 233 CTCTCTTACCGACTTGTACAAGTTTTGATTTTTTTTACTTGATCTGGGATTTGATTT 289
> Ahg944166 jgi|Araly1|944166|scaffold_700395.1
Length=2732
Score = 640 bits (346), Expect = 0.0
Identities = 1123/1481 (76%), Gaps = 121/1481 (8%)
Strand=Plus/Plus
Query 556 CGGAAACTCCATGAATCTAAGCTCAGGGAAGCTCTT-GAACAAGCATCTGAAGATGGGTT 614
||||||||| ||||| |||||||||||||||| || ||| |||| |||||| ||||||
Sbjct 157 CGGAAACTCTATGAAGATAAGCTCAGGGAAGCT-TTAGAAGAAGCTTCTGAAAATGGGTC 215
Query 615 ACTCGTT-AAATCTCAAGACATGGAAGAAGA-AGATGAGTCTCAAGATCAAATTCTT-GG 671
|||| || ||||| |||||||| || |||| | ||| | | ||| || ||| ||
Sbjct 216 ACTC-TTCAAATCCCAAGACATTGACCAAGATA-ATG-G--T---GATGGAA-GCTTGGG 266
Query 672 ACGGTCTAGATCACTT-GCTAGAC-TCAATGCTCAACGAGAG-TTCTTGCGTGCTACAT- 727
|| || ||||| ||| ||||||| || | || || || ||| ||| | || || || |
Sbjct 267 TCGTTCCAGATC-CTTAGCTAGACTTC-ACGCGCAGCGTGAGTTTC-TACGCGCCAC-TG 322
Query 728 CACTCGCAGCTCAAAGAGCATT-T-GAATCAGAAGAAACT-TTACCTGAGCT-TGAAGAA 783
| | |||||| || | ||| | ||||||||||| || || |||||||| | |||
Sbjct 323 CTTTAGCAGCT-GAA-CGTATTATCGAATCAGAAGACTCTATT-CCTGAGCTCCG-TGAA 378
Query 784 GCACTT-AC-CA-TT-TTTCTGACCATGTATCCAAAGTATCAATCTTCTGAGAAAG-TTG 838
|| || || | || ||| || |||||||||||||| ||| |||||||| ||| |||
Sbjct 379 GC-TTTGACTAAGTTCCTTC-GA--ATGTATCCAAAGTACCAAGCTTCTGAG-AAGATTG 433
Query 839 ATGAATTGAGAAAC-GATGAGTAT-TTCCACTTATCAT--T-A-C--CAAAGGTATGTCT 890
|| | || || | | |||||||| | |||||||||| | | | |||||||||||||
Sbjct 434 ATCAGTTAAG-ATCTAATGAGTATAGT-CACTTATCATCATCAGCTTCAAAGGTATGTCT 491
Query 891 TGACTATTGTGGATTTGGGT-TGTTCTCGTATCTTCAAACTGTTCATTACTGGGACACTT 949
||| || ||||||||| ||| | ||||| ||| |||| ||| | || || ||||| ||||
Sbjct 492 TGATTACTGTGGATTT-GGTCTCTTCTCTTATGTTCAGACTCTGCACTATTGGGATACTT 550
Query 950 GCACTTTTAGTTTGTCGGAGATTAGTGCCAATCTAAGCAATCATGCTATATATGGTGGTG 1009
| || |||||| | || ||||||| ||||||| | || || || || | || ||||| |
Sbjct 551 GTACCTTTAGTCTCTCTGAGATTACTGCCAATTTGAGTAACCACGCGCTTTACGGTGGAG 610
Query 1010 CTGAGAAAGGATCTATTGAACATGATATCAAGATTAGGATAATGGACTACTTGAACATCC 1069
|||||| ||| || | |||||||||||||| | |||||| |||||||| ||||||||||
Sbjct 611 CTGAGAGTGGAACTGTGGAACATGATATCAAAACTAGGATCATGGACTATTTGAACATCC 670
Query 1070 CTGAGAATGAGTATGGTCTTGTGTTCACTGTTAGTAGAGGCTCTGCGTTCA-AGTTGCTT 1128
|||||||||||||||||||||| ||||| || |||||||||||||| |||| | ||| ||
Sbjct 671 CTGAGAATGAGTATGGTCTTGTTTTCACAGTGAGTAGAGGCTCTGCTTTCAGA-TTG-TT 728
Query 1129 -GCAGAGTCTTATCCATTCCACACTAACAAGAAGCTTCTGACTATGTTTGATCACGAGAG 1187
|| || |||||||| || || | || ||| |||| |||| ||||| |||||||||||
Sbjct 729 AGCGGAATCTTATCCTTTTCAGTCGAATAAGCGGCTTTTGACAATGTTCGATCACGAGAG 788
Query 1188 CCAATCGGTTAGTTGGATGG-GTCAGTGTGCGAAGGAGAAAGGTGCCAAGG-TTGGTAGC 1245
||| || || | |||||||| | ||| |||| ||||||||| || |||| || || |
Sbjct 789 CCAGTCTGTGAATTGGATGGCG-CAGACAGCGAGGGAGAAAGGCGCAAAGGCTTA-TAAC 846
Query 1246 GCCTGGTTTAAGTGGCCTACGCTT-AGGCTGTGTTCAA-TGGATCTTAA-GAAG-GAGAT 1301
|| |||||||| ||||| || || | ||| ||||| | || || |||| ||| | | |
Sbjct 847 GCTTGGTTTAAATGGCCAACT-TTGAAGCTTTGTTCGACTG-AT-TTAAAGAAACG-GTT 902
Query 1302 -T-TTGAGTAAGAAGAAGAGGAAGAAGGATTCTGCAACTGGTTTGTTTGTGTTTCCAG-T 1358
| || | |||||||| || |||||||||||| || ||| ||||||||||||| | |
Sbjct 903 GTCTT-A-TAAGAAGAGGAAGAAGAAGGATTCCGCGGTTGGGCTGTTTGTGTTTCCTGCT 960
Query 1359 ACAATCAAGGGTCACGGGGT-CTAAGTATTCTTACCAGTGGATGGCATTGGCTCAGCAAA 1417
|| || | || ||||| | ||||||||||||| ||||||||||| || |||||||| |
Sbjct 961 -CAGTCTCGTGTTACGGG-TACTAAGTATTCTTATCAGTGGATGGCTTTAGCTCAGCAGA 1018
Query 1418 ACAACTGGCATGTCTTGCTTGATGCTGGTGCTTTAGGTCCAAAAGACATGGACTCGCTTG 1477
|| | |||||||| ||||||||||||||| |||||||||| ||||| ||||| ||||| |
Sbjct 1019 ACCATTGGCATGTGTTGCTTGATGCTGGTTCTTTAGGTCCCAAAGATATGGATTCGCTCG 1078
Query 1478 GATTGTCTTTGTTTCGACCGGATTTTATCATCACTTCGTTTTATCGTGTGTTTGGGTATG 1537
| ||||| ||||| || || || |||||||| || ||||| || ||||| |||||| |||
Sbjct 1079 GTTTGTCATTGTTCCGGCCTGAGTTTATCATTACCTCGTTCTACCGTGTATTTGGGCATG 1138
Query 1538 ATCCAACTGGATTTGGTTGTCTGTTGATTAAGAAATCTGTGATTAGCTGC-TTGCAGAGT 1596
| || || ||||||||||| ||||||||||| ||||| || || | || || ||||||
Sbjct 1139 ACCCGACGGGATTTGGTTGCCTGTTGATTAAAAAATCAGTTATGGGAAGCCTT-CAGAGT 1197
Query 1597 CAATCTGGGAAAACGAGT-TCGGGAATTGTGAAGATAACACCTGAGTATCC-TCTGTATC 1654
|||||||||||||| || || || || |||||||| || ||| | ||||| | | ||||
Sbjct 1198 CAATCTGGGAAAAC-AGGATCAGGTATAGTGAAGATCACGCCTCAATATCCGT-TATATC 1255
Query 1655 TAAGTGACTCCA-TGGATGG-CTTGGAAGGTTTGACTGGGATTCAAGAT-A-A-TG--GC 1707
| ||||| || | | ||||| |||| | || ||| ||| || ||||| | | || |
Sbjct 1256 TTAGTGATTC-AGTAGATGGTCTTG-ACGGATTGGTTGGTTTTGAAGATCACAATGAAG- 1312
Query 1708 ATT--GCTATTAATGGAGATAATAAAGCCTTGGGAACTCA-ATTACCCGCATTT-TCCGG 1763
|| || | || | || | || || || |||||| || || || ||| || ||
Sbjct 1313 ATAAAGCCA--AA-GAAGCTCATCGT-CCA-GG-AACTCAGATG-CCAGC-TTTCTCAGG 1364
Query 1764 TGCATATACTTCTGCTCAGGTGCAGG-ATGTCTTTGAGACAGA--TA-TGGATCATGAA- 1818
|||||| ||||| || || ||| ||| |||| ||||| ||||| | | || || ||
Sbjct 1365 TGCATACACTTCAGCACAAGTG-AGGGATGTGTTTGAAACAGAGCTCCTAGAAGAT-AAC 1422
Query 1819 AT-TGGTTCTGATAGAGAT--AAC-ACAAGCGCTG---TGTTTGAGGAAGCTGAGAGTAT 1871
|| | ||||||||||||| ||| || ||| | | ||||| ||| | || ||| |
Sbjct 1423 ATATC-TTCTGATAGAGATGGAACTACTAGCACCACAATTTTTGAAGAAACGGAAAGTGT 1481
Query 1872 CTCAGTGGGTGAATTGATTAAAAGTCCGGTTTTCAGCGAAGACGAGTCATCAGATAGCTC 1931
|| || || |||||||| ||||| |||||||| |||||||| |||||||| || | ||
Sbjct 1482 TTCGGTTGGAGAATTGATGAAAAGCCCGGTTTTTAGCGAAGATGAGTCATCGGACAATTC 1541
Query 1932 CCTCTGGATTGATTTGGGTCAGAGTCCTGCT-GATTCTGAT 1971
| ||||||||||||||||| |||||| || | |||||||
Sbjct 1542 GTTTTGGATTGATTTGGGTCAAAGTCCT-CTTGGTTCTGAT 1581
Score = 122 bits (66), Expect = 1e-26
Identities = 366/502 (73%), Gaps = 56/502 (11%)
Strand=Plus/Plus
Query 2518 GAGATTGTTTGCAGGCACATTGATCATGTAAACATGTTGGGTCTCAACAAAACCACCTCA 2577
|||||||||||||| || ||||||||||| || ||||| ||||| || | |||||| |
Sbjct 2158 GAGATTGTTTGCAGACATATTGATCATGTGAATATGTTAGGTCTTAATAGAACCACAACG 2217
Query 2578 AGACTCCGGTACCTCATTAACTGGCTTGTGACCTC-TCTGCTCCAATTA-AGGCTGCCTA 2635
|||||| ||| || ||||||||||| |||| || | | || ||| || | | |||||
Sbjct 2218 AGACTCAGGTTTCTGATTAACTGGCTAGTGATATCGT-TACTGCAACTACAAG-TGCCT- 2274
Query 2636 GATCAGATTCA-GATGG-AGAGCACAAGAATCTTGTTCAGATTTACGGTCCAAAGATCAA 2693
| | | ||| || || ||| ||| ||||||||| |||||||| || || ||||||||
Sbjct 2275 G---A-A-TCAGGA-GGCAGA-AACATGAATCTTGTGCAGATTTATGGGCCGAAGATCAA 2327
Query 2694 ATACGAGCGTGGATCTTCCGTGGCATTCAATATCAGGGATTTGAAAAG---TGGAATGGT 2750
|||||| | ||| | | || ||||||||| | || || | ||||| || | ||
Sbjct 2328 ATACGAAAGAGGAGCAGCGGTTGCATTCAATGTGAGAGA--T-AAAAGCAAAGGCTTTGT 2384
Query 2751 TCA-TCCAGAGATAGTGCAGAAACTAGCTGAAAGAGAAGGCATTTCTCTAGGAATTGGT- 2808
| | ||| || || || |||| ||| | |||||||||||| || ||||| || ||||||
Sbjct 2385 T-AGTCCGGAAATTGTTCAGAGACTCGGTGAAAGAGAAGGTATATCTCTCGGCATTGGTA 2443
Query 2809 TACCTAAGTCACATAAAG-ATCA-TCGATAATCGAAGCGAAG-ATTCA-AGTTCTTGG-- 2862
|| | |||||||| | | || | | ||| || || | ||| | || || || ||
Sbjct 2444 TA-TTGAGTCACAT-ACGCAT-AGTGGATGAT--AAACCAAGAAACCATAGAGCTCGGAC 2498
Query 2863 -AAA-CCG---GTG----G-A-TCG-AGAAGGAA-----GAAACAATGGGTTCATAAGAG 2905
||| | ||| | | | | |||| ||| |||| || || || ||||||
Sbjct 2499 TAAAGAAGATAGTGCTTTGCACTTGCAGAATGAAGCCGGGAAA-AACGGATTTATAAGAT 2557
Query 2906 TTGAGGTTGTCACAGCTTCTCTTGGGTTCTTGACAAACTTTGAAGATGTTTACA-GATTA 2964
|||||||||| |||||||||||| | |||||||||||||||||||||||||||| | ||
Sbjct 2558 TTGAGGTTGTTACAGCTTCTCTTAGCTTCTTGACAAACTTTGAAGATGTTTACAAGCTT- 2616
Query 2965 TGGA-ATTTCGTGGCCAAGTTC 2985
||| ||| ||| |||||||||
Sbjct 2617 TGGGCATT-CGTCGCCAAGTTC 2637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122964018363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5