BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G66970.1

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332873 jgi|Araly1|332873|fgenesh1_pm.C_scaffold_8002216           710    0.0  
  Ahg359800 jgi|Araly1|359800|fgenesh1_pg.C_scaffold_1105000001       60.2    1e-08


> Ahg332873 jgi|Araly1|332873|fgenesh1_pm.C_scaffold_8002216
Length=528

 Score =  710 bits (384),  Expect = 0.0
 Identities = 486/534 (91%), Gaps = 12/534 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGTTGGAGGAAGTGAGGGGTCGGATAGGCCGGTCTTTTGAAGAGATGAATAAAACA  60
            ||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||
Sbjct  1    ATGGCGTTGGAGGAACTGAGAGGTCGGATAGGCCGGTCCTTTGAAGAGATGCATAAAACA  60

Query  61   AGCAACATGGACTGCACGAAACTGAAGAGTTGCTTGAACGAGATCACATGCGCTTTGCTT  120
            ||||||| ||| || | || |||||||||||| |||||||||||||||||||||||||||
Sbjct  61   AGCAACAAGGATTGGATGAGACTGAAGAGTTGTTTGAACGAGATCACATGCGCTTTGCTT  120

Query  121  GACGCCGATATTCCTAGATTGGCCGTGGATGAGATTGAGACGAAAAGTCTGGAAATTATC  180
            ||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  121  GACGCCGATTTTCCTAGATTGGCCGTGGATGAGATTGAGATGAAAAGTCAGGAAATTATC  180

Query  181  AATCTGCCTAAGGCGCCCAAGAAGAAGGGTGCCCTAATCTAC-ATGATGATGTTA-CAGG  238
            ||||| |||| |||| |||||||||||||    ||||||||| | | |||||||| |   
Sbjct  181  AATCTCCCTAGGGCGTCCAAGAAGAAGGGCAAACTAATCTACGA-GGTGATGTTAGC-TA  238

Query  239  AGCTCTCTAGTAAGCTAGATCCGGGAAAATCTGCACTCATTCGGGGAAAGCTTGAACCTA  298
            |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct  239  AGCTCTCTAGTACGCTAGATCCGGGAAAATCTGCACTCATCCGGGGAAAGCGTGAACCTA  298

Query  299  GCATAGTCATGTTCATCGGATTACGAGGTGTTGACAAGACCAAAACGTGTGCCAAGTATG  358
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  299  GCATAGTCATGTTCATCGGATTACGAGGTGTTGACAAGACCAAAACGTGTGCCATGTATG  358

Query  359  CTCGTTACCACCGGAAGAAGGGATTCAGACCAGCTTTAGTGTGTGCTGATACTTTCAAG-  417
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  359  CTCGTTACCACCGGAGGAAGGGATTCAGACCAGCTTTAGTGTGTGCTGATACTTTCAGGA  418

Query  418  TTCGATGCTTTTGTCCGTCTCAACAAGGCTGCCAAAGATGAGGTTCCAGTTTACGCAAG-  476
            || |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| 
Sbjct  419  TT-GATGCTTTTGTCCGGCTCAACAAGGCTGCGAAAGATGAGGTTCCAGTTTACGGAAGA  477

Query  477  GTATAT-ATATATTGA-GTATTTCAAGCTGAAGCTTTTGTCAGGAGTCTCTTGA  528
            | | |  || | |||| | |||| ||||||||||||||||||||||||||||||
Sbjct  478  G-AGAGGAT-T-TTGAAGCATTTGAAGCTGAAGCTTTTGTCAGGAGTCTCTTGA  528


> Ahg359800 jgi|Araly1|359800|fgenesh1_pg.C_scaffold_1105000001
Length=621

 Score = 60.2 bits (32),  Expect = 1e-08
 Identities = 39/42 (93%), Gaps = 1/42 (2%)
 Strand=Plus/Plus

Query  488  TTG-AGTATTTCAAGCTGAAGCTTTTGTCAGGAGTCTCTTGA  528
            ||| || |||| ||||||||||||||||||||||||||||||
Sbjct  209  TTGAAGCATTTGAAGCTGAAGCTTTTGTCAGGAGTCTCTTGA  250



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19230416856


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5