BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66980.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496902 jgi|Araly1|496902|fgenesh2_kg.8__2718__AT5G66980.1 1328 0.0
> Ahg496902 jgi|Araly1|496902|fgenesh2_kg.8__2718__AT5G66980.1
Length=999
Score = 1328 bits (719), Expect = 0.0
Identities = 899/986 (91%), Gaps = 12/986 (1%)
Strand=Plus/Plus
Query 14 GTAAAGACTTACAATTTTTCAAGGTCTTTCTCCCTGAATTCGGTTCTCACGAACTGGTGA 73
||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 20 GTAAAGACTTAGAATTTTTCAAGGTCTTTCTCCCTGAATTCAGCTCTCACGAACTGGTGA 79
Query 74 TTCCTCCTGCATTCATCGATATGTTAGAGAAACCATTACCTAAAGAAGCGTTCTTAGTCG 133
|||||||||||||||| || || ||||| || ||||||||||||||||||||||||||
Sbjct 80 TTCCTCCTGCATTCATTGACATATTAGACAAGGAATTACCTAAAGAAGCGTTCTTAGTCG 139
Query 134 ATGAGATTGGACGGTTATGGTGTGTAGAGACTAAAACAGAAGATACAGAAGAAAGATTCT 193
||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 140 ATGAGATCGGACGGTTATGGTGTGTCGAGACAAAAACAGAAGACACAGAAGAAAGATTCT 199
Query 194 GTGTTTTCTTCACAAAAGGTTGGCAAAGTTTCGCAAACGATCAATCTCTTGAATTTGGAG 253
||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 200 GTGTTTTGTTCAAAAAAGGTTGGGAAAGTTTCGCAAACGATCAATCTCTTGAATTTGGAG 259
Query 254 ACTTCCTTGT-CTTCAGCTACGACGGCGATTCCAGATTCTCCGTTACGATTTTCGCTAAT 312
|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 260 ACTTTCTTGTGTTTC-GCTACGACGGCGATTCGAGATTCTCCGTTACGATTTTCGCTAAA 318
Query 313 GACGGATGTAAAAAAGATGTTGGTGTCGTCTCAACCACGGATAGATCTAGGGTTTCTCTT 372
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 319 GACGGATGTAAAAAAGATATTGGTGTCGTCACAACCACGGATAGATCTAGGGTTTCTGTT 378
Query 373 GATGAGGAAGAACCGGATGATATTTTTACTAAACCGGATCGTATGAGAGATTGTGATTGT 432
|||||| ||||||| | |||||||| |||| ||||||| | | | || || ||||||
Sbjct 379 GATGAGAAAGAACCAGTTGATATTTCTACTGAACCGGAAC-T-T-AG-GA--AAGATTGT 432
Query 433 GGCCAGAGCATTAACCGGAAACGGAAACGCGATTCGGTTAATGAAGACCCTCACG-TACT 491
||||| || ||||||| |||||||||||||||||||||||||||||| |||| | || |
Sbjct 433 GGCCATAGGATTAACCAGAAACGGAAACGCGATTCGGTTAATGAAGATCCTCGTGTTA-T 491
Query 492 GGTTGATGATAAACCGGAGTATGTTTCAACTTACAAAACCAAACCGGAGCATAGTGAAAA 551
|||| | |||||||||| |||||||||||| |||||||||||||||||||| |||||||
Sbjct 492 GGTTAACAATAAACCGGATTATGTTTCAACTAACAAAACCAAACCGGAGCATCGTGAAAA 551
Query 552 GACTCAGAGAACAGTTAACCGGGCTGGAGATACTTGTGACATATCATGGTTTCCAGAGAA 611
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||
Sbjct 552 GACTCAGAGAACAGTTAACCGGGCTGGAGATCCTTGTGACATATCATGGTGTCCTGAGAA 611
Query 612 GAAACACAATGGATTTGAAGAATCGGTTTACAAACCCAAGCATCCGCATTTTGTTAGGAA 671
| |||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||
Sbjct 612 GGAACACAATGGATTTGAAGAATCGGTTTATAAACCCAAGCATCCTCATTTTCTAAGGAA 671
Query 672 TATCACAAGAGGTTCACTTCAGAAATTGGAATTACCGTTAACTTTTCTGAGATCGAACGG 731
|||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 672 TATCACAATCGCTTCACTTCAGAAATTGGAAATACCGTTAACTTTTCTGAGATCGAACGG 731
Query 732 GATTGAATTGGAGGAAGATA-TTGAGCTTTGTGATGAAAGTGGAAAGAAGTGGCCTTTGA 790
|||||||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||
Sbjct 732 GATTGAATTGGAGGAAGA-AGTTGGGCTTTGTGATGAAAATGGAAAGAAGTGGCCTTTGA 790
Query 791 AGATTCTGAATCACGACAGAGGATTCAAGTTCTCGCATGAATCATGGTTGTGTTTCTGTA 850
||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 791 AGATTGTGAATCACGGTAGAGGAGTCAAGTTCTCGCATGAATCATGGTTGTGTTTCTGTA 850
Query 851 AAAGCCATGAGATGATACTGACCAATAAGTGTCTATTTGAGTTTATTGTCCCAAGTAATG 910
|||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 851 AAAGCCATAACATGATGCTGACCCATAAGTGTCTATTTGAGTTTATTGTCCCAAGTAATG 910
Query 911 GGAGATGCAGTGAGATTCTAGTTCGTATTGTCAGTGGGAGATTGCCTACCACTATGACCA 970
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 911 GGAGATGCAACGAGATTCAAGTTCGTATTGTCAGTGGGAGATTGCCTACCACTATGACTA 970
Query 971 AAAATAATTACCAAGTTATTGATATG 996
| |||| ||||||||| ||| ||||
Sbjct 971 GACATAAATACCAAGTTCTTGCTATG 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5