BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66985.1
Length=530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951529 jgi|Araly1|951529|scaffold_803416.1 326 1e-88
Ahg925706 jgi|Araly1|925706|scaffold_201267.1 315 3e-85
> Ahg951529 jgi|Araly1|951529|scaffold_803416.1
Length=298
Score = 326 bits (176), Expect = 1e-88
Identities = 247/279 (89%), Gaps = 13/279 (5%)
Strand=Plus/Plus
Query 116 TTTTCTTTCTCTACTACAATGGAATTTGCGACTTCGAAAGGAGAGGAGATTTTGAAAGAT 175
|||| | |||||| ||||||||| |||| || || | |||||||||||| |||||||||
Sbjct 4 TTTT-TATCTCTAGTACAATGGAGTTTGTGATTTTGGAAGGAGAGGAGAGTTTGAAAGAG 62
Query 176 GAGC-A--AGTGTCCAAGCAGCTACACCTGATATCGTCT-----G-AAACGCAAACGCAA 226
|||| | |||||| ||||||||||| |||||||||||| | ||||||||||||||
Sbjct 63 GAGCAAGTAGTGTCAAAGCAGCTACATCTGATATCGTCTGAAACGCAAACGCAAACGCAA 122
Query 227 ACGCTGAACAAAAAAGCCGTTCTAAACCGCATCCGCAACCACAAATGTATTCACAAAATC 286
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ACGCTGAACAGAAGAGCCGTTCTAAACCGCATCCGCAACCACAAATGTATTCACAAAATC 182
Query 287 AAGAGTCTTCTTCACACCACCGCGGCTAACAACGGAGCCACCGTCGACGCTGATTATTAT 346
||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 183 AAGAGTCTTCTCCACACCACCGCGGCTAATGACGGAGCCACCGTCGATGCTGATTAT--- 239
Query 347 CGGTGGATTGATAGCGGCGATGTCTTTTCTTGTCCGTGA 385
|||||||||||||| ||||||||||| ||||||||||||
Sbjct 240 CGGTGGATTGATAGTGGCGATGTCTTCTCTTGTCCGTGA 278
> Ahg925706 jgi|Araly1|925706|scaffold_201267.1
Length=292
Score = 315 bits (170), Expect = 3e-85
Identities = 243/276 (88%), Gaps = 13/276 (5%)
Strand=Plus/Plus
Query 116 TTTTCTTTCTCTACTACAATGGAATTTGCGACTTCGAAAGGAGAGGAGATTTTGAAAGAT 175
|||| | |||||||||||||||| |||| || || | ||||||||| || |||||||||
Sbjct 4 TTTT-TATCTCTACTACAATGGAGTTTGTGATTTTGGAAGGAGAGGTGAGTTTGAAAGAG 62
Query 176 GAGC-A-----AGTGTCCAAGCAGCTACACCTGATATCGTCTGAAACGCAAACGCAAACG 229
|||| | |||||| ||||||||||| |||||||||||| | |||||||||||
Sbjct 63 GAGCAAGTGTTAGTGTCAAAGCAGCTACATCTGATATCGTCT-----G-AAACGCAAACG 116
Query 230 CTGAACAAAAAAGCCGTTCTAAACCGCATCCGCAACCACAAATGTATTCACAAAATCAAG 289
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CTGAACAGAAGAGCCGTTCTAAACCGCATCCGCAACCACAAATGTATTCACAAAATCAAG 176
Query 290 AGTCTTCTTCACACCACCGCGGCTAACAACGGAGCCACCGTCGACGCTGATTATTATCGG 349
|||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 177 AGTCTTCTCCACACCACCGCGGCTAATGACGGAGCCACCGTCGATGCTGATCATTATCGG 236
Query 350 TGGATTGATAGCGGCGATGTCTTTTCTTGTCCGTGA 385
||||||||||| ||||||||||| ||||||||||||
Sbjct 237 TGGATTGATAGTGGCGATGTCTTCTCTTGTCCGTGA 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19306728034
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5