BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66990.1
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338787 jgi|Araly1|338787|fgenesh1_pg.C_scaffold_2000886 1304 0.0
Ahg358861 jgi|Araly1|358861|fgenesh1_pg.C_scaffold_8002648 1242 0.0
Ahg951664 jgi|Araly1|951664|scaffold_103100001.1 885 0.0
> Ahg338787 jgi|Araly1|338787|fgenesh1_pg.C_scaffold_2000886
Length=837
Score = 1304 bits (706), Expect = 0.0
Identities = 796/839 (95%), Gaps = 7/839 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGATCAAAGACCTCTAATGACCTGGTTAGAGGCCAACAACTATGAATCATTCCTT 60
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGATCAAAAACCTCTAATGGTCTGGTCAGAGGCCAACAACTATGAATCATTCCTT 60
Query 61 CAAGAAGACATATTCTCGTTTCTCGATCAATCACTTTTCGTCGATCCTCACAGCTCTTTC 120
||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 61 CAAGAAGACATATTCTCGTTTCTTGATCAATCACTTTCCATCGATCCTCACAGCTCTTTC 120
Query 121 ATTGACCCTTTTAAGGATTTTCAAACCCAAAATTGGTTTTCTCTCCAAGACAGCATTGTT 180
||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 121 ATTAACCCTTTTAAGGATTTTCAAACCCAAACTTGGTTTTCTTTCCAAGACAGCATTGTT 180
Query 181 AATCATATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATCCTATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240
Query 241 GCTATCTCTAGTACTTTCTCTCTAGATAT-ATCGAGTGGATGGTGGAACGAGAATAATGG 299
|| |||||||||||||||||||||||||| || ||| ||||||||||| || ||||||||
Sbjct 241 GCAATCTCTAGTACTTTCTCTCTAGATATAAT-GAGCGGATGGTGGAATGATAATAATGG 299
Query 300 TAACTACAATAACCAGGTCGAACCAAACCTTGATGAAATTTCAAGAACTAATACCATGGG 359
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 300 TAACTACAATAACCAGGTCGAACCAATTCTTGATGATATTTCAAGAACTAATACCATGGG 359
Query 360 AGATCCAAATATGGAGCAA-ATATTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAA 415
||||||||| |||||| || ||||||||||||||||||||||| | || ||||||||||
Sbjct 360 AGATCCAAAGATGGAG-AAGATATTGCATGAAGATGTTAACACAACTATAAAAGAGAAAA 418
Query 416 CAAGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGTCATCAATAATA 475
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 419 CAAGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGACATCAATAGTT 478
Query 476 TGTCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGTCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGC 538
Query 536 TTAACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTAACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGC 598
Query 596 CTCACCGTAAGCTCACGAGCCTAAACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGA 655
|||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||
Sbjct 599 CTCACCGTAAGCTCACGAGCCTTAACGCTCTAATTACCAATCTCAAGGACTTATTAGGGA 658
Query 656 ACACGAAGGGGAGAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGG 715
||||| |||| | |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 ACACGGAGGGAAAAACGCCCAAGAGTAAGCTGAGGAATGCTTTGGAGCTTTTGGAGATGG 718
Query 716 AGAAGAAGATGATTGAGGAAGTTCCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAA 775
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 719 AGAAGAAGATGATTGAGGAAGTTCCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAA 778
Query 776 GACAGGCTTGCTTCAAGGCTAAATACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834
|||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||
Sbjct 779 GACAGGCTTGCTTCAAGGCTAAATACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 837
> Ahg358861 jgi|Araly1|358861|fgenesh1_pg.C_scaffold_8002648
Length=822
Score = 1242 bits (672), Expect = 0.0
Identities = 785/837 (94%), Gaps = 18/837 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGATCAAAGACCTCTAATGACCTGGTTAGAGGCCAACAACTATGAATCATTCCTT 60
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGATCAAAAACCTCTAATGGTCTGGTCAGAGGCCAACAACTATGAATCATTCCTT 60
Query 61 CAAGAAGACATATTCTCGTTTCTCGATCAATCACTTTTCGTCGATCCTCACAGCTCTTTC 120
||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 61 CAAGAAGACATATTCTCGTTTCTTGATCAATCACTTTCCATCGATCCTCACAGCTCTTTC 120
Query 121 ATTGACCCTTTTAAGGATTTTCAAACCCAAAATTGGTTTTCTCTCCAAGACAGCATTGTT 180
||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 121 ATTAACCCTTTTAAGGATTTTCAAACCCAAACTTGGTTTTCTTTCCAAGACAGCATTGTT 180
Query 181 AATCATATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATCCTATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240
Query 241 GCTATCTCTAGTACTTTCTCTCTAGATATATCGAGTGGATGGTGGAACGAGAATAATGGT 300
|| ||||||| | | ||| || ||| ||||||||||| || |||||||||
Sbjct 241 GCAATCTCTA--A---------T--ATA-AT-GAGCGGATGGTGGAATGATAATAATGGT 285
Query 301 AACTACAATAACCAGGTCGAACCAAACCTTGATGAAATTTCAAGAACTAATACCATGGGA 360
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 286 AACTACAATAACCAGGTCGAACCAATTCTTGATGATATTTCAAGAACTAATACCATGGGA 345
Query 361 GATCCAAATATGGAGCAAATATTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAACA 417
|||||||| |||||| ||||||||||||||||||||||||| | || ||||||||||||
Sbjct 346 GATCCAAAGATGGAGAAAATATTGCATGAAGATGTTAACACAACTATAAAAGAGAAAACA 405
Query 418 AGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGTCATCAATAATATG 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 406 AGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGACATCAATAGTTTG 465
Query 478 TCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTT 525
Query 538 AACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCT 585
Query 598 CACCGTAAGCTCACGAGCCTAAACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGAAC 657
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 586 CACCGTAAGCTCACGAGCCTTAATGCTCTAATTGCTAATCTCAAGGACTTATTAGGGAAC 645
Query 658 ACGAAGGGGAGAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAG 717
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 ACGGAGGGGAAAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAG 705
Query 718 AAGAAGATGATTGAGGAAGTTCCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAAGA 777
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 706 AAGAAGATGATTGAGGAAGTTCCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAAGA 765
Query 778 CAGGCTTGCTTCAAGGCTAAATACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834
|||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||
Sbjct 766 CAGGCTTGCTTCAAGGCTAAATACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 822
> Ahg951664 jgi|Araly1|951664|scaffold_103100001.1
Length=611
Score = 885 bits (479), Expect = 0.0
Identities = 545/576 (95%), Gaps = 7/576 (1%)
Strand=Plus/Plus
Query 264 AGATAT-ATCGAGTGGATGGTGGAACGAGAATAATGGTAACTACAATAACCAGGTCGAAC 322
|||||| || ||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 18 AGATATAAT-GAGCGGATGGTGGAATGATAATAATGGTAACTACAATAACCAGGTCGAAC 76
Query 323 CAAACCTTGATGAAATTTCAAGAACTAATACCATGGGAGATCCAAATATGGAGCAA-ATA 381
||| |||||||| |||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 77 CAATTCTTGATGATATTTCAAGAACTAATACCATGGGAGATCCAAAGATGGAG-AAGATA 135
Query 382 TTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAACAAGCCAGAAGAGGATAATTATG 438
|||||||||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 136 TTGCATGAAGATGTTAACACAACTATAAAAGAGAAAACAAGCCAGAAGAGGATAATTATG 195
Query 439 AAGAGGCGATATAGAGAAGATGGAGTCATCAATAATATGTCAAGGGAAATGATGAAGCAG 498
||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 196 AAGAGGCGATATAGAGAAGATGGAGACATCAATAGTTTGTCAAGGGAAATGATGAAGCAG 255
Query 499 TACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTTAACATTGGTGTAACCCTCTTG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTTAACATTGGTGTAACCCTCTTG 315
Query 559 AAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCTCACCGTAAGCTCACGAGCCTA 618
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 AAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCTCACCGTAAGCTCACGAGCCTT 375
Query 619 AACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGAACACGAAGGGGAGAACGCCCAAG 678
|||||||||||| | |||||||||||||| |||||||||||| |||| | ||||||||||
Sbjct 376 AACGCTCTAATTACCAATCTCAAGGACTTATTAGGGAACACGGAGGGAAAAACGCCCAAG 435
Query 679 AGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAGAAGAAGATGATTGAGGAAGTT 738
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AGTAAGCTGAGGAATGCTTTGGAGCTTTTGGAGATGGAGAAGAAGATGATTGAGGAAGTT 495
Query 739 CCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAAGACAGGCTTGCTTCAAGGCTAAA 798
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 496 CCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAAGACAGGCTTGCTTCAAGGCTAAA 555
Query 799 TACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834
||||||| |||| |||||||||| ||||||||||||
Sbjct 556 TACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30841439853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5