BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66990.1 Length=834 Score E Sequences producing significant alignments: (Bits) Value Ahg338787 jgi|Araly1|338787|fgenesh1_pg.C_scaffold_2000886 1304 0.0 Ahg358861 jgi|Araly1|358861|fgenesh1_pg.C_scaffold_8002648 1242 0.0 Ahg951664 jgi|Araly1|951664|scaffold_103100001.1 885 0.0 > Ahg338787 jgi|Araly1|338787|fgenesh1_pg.C_scaffold_2000886 Length=837 Score = 1304 bits (706), Expect = 0.0 Identities = 796/839 (95%), Gaps = 7/839 (1%) Strand=Plus/Plus Query 1 ATGGCTGATCAAAGACCTCTAATGACCTGGTTAGAGGCCAACAACTATGAATCATTCCTT 60 ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1 ATGGCTGATCAAAAACCTCTAATGGTCTGGTCAGAGGCCAACAACTATGAATCATTCCTT 60 Query 61 CAAGAAGACATATTCTCGTTTCTCGATCAATCACTTTTCGTCGATCCTCACAGCTCTTTC 120 ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| Sbjct 61 CAAGAAGACATATTCTCGTTTCTTGATCAATCACTTTCCATCGATCCTCACAGCTCTTTC 120 Query 121 ATTGACCCTTTTAAGGATTTTCAAACCCAAAATTGGTTTTCTCTCCAAGACAGCATTGTT 180 ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 121 ATTAACCCTTTTAAGGATTTTCAAACCCAAACTTGGTTTTCTTTCCAAGACAGCATTGTT 180 Query 181 AATCATATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATCCTATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240 Query 241 GCTATCTCTAGTACTTTCTCTCTAGATAT-ATCGAGTGGATGGTGGAACGAGAATAATGG 299 || |||||||||||||||||||||||||| || ||| ||||||||||| || |||||||| Sbjct 241 GCAATCTCTAGTACTTTCTCTCTAGATATAAT-GAGCGGATGGTGGAATGATAATAATGG 299 Query 300 TAACTACAATAACCAGGTCGAACCAAACCTTGATGAAATTTCAAGAACTAATACCATGGG 359 |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 300 TAACTACAATAACCAGGTCGAACCAATTCTTGATGATATTTCAAGAACTAATACCATGGG 359 Query 360 AGATCCAAATATGGAGCAA-ATATTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAA 415 ||||||||| |||||| || ||||||||||||||||||||||| | || |||||||||| Sbjct 360 AGATCCAAAGATGGAG-AAGATATTGCATGAAGATGTTAACACAACTATAAAAGAGAAAA 418 Query 416 CAAGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGTCATCAATAATA 475 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 419 CAAGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGACATCAATAGTT 478 Query 476 TGTCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGC 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TGTCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGC 538 Query 536 TTAACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGC 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTAACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGC 598 Query 596 CTCACCGTAAGCTCACGAGCCTAAACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGA 655 |||||||||||||||||||||| |||||||||||| | |||||||||||||| ||||||| Sbjct 599 CTCACCGTAAGCTCACGAGCCTTAACGCTCTAATTACCAATCTCAAGGACTTATTAGGGA 658 Query 656 ACACGAAGGGGAGAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGG 715 ||||| |||| | |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 659 ACACGGAGGGAAAAACGCCCAAGAGTAAGCTGAGGAATGCTTTGGAGCTTTTGGAGATGG 718 Query 716 AGAAGAAGATGATTGAGGAAGTTCCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAA 775 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 719 AGAAGAAGATGATTGAGGAAGTTCCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAA 778 Query 776 GACAGGCTTGCTTCAAGGCTAAATACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834 |||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| Sbjct 779 GACAGGCTTGCTTCAAGGCTAAATACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 837 > Ahg358861 jgi|Araly1|358861|fgenesh1_pg.C_scaffold_8002648 Length=822 Score = 1242 bits (672), Expect = 0.0 Identities = 785/837 (94%), Gaps = 18/837 (2%) Strand=Plus/Plus Query 1 ATGGCTGATCAAAGACCTCTAATGACCTGGTTAGAGGCCAACAACTATGAATCATTCCTT 60 ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1 ATGGCTGATCAAAAACCTCTAATGGTCTGGTCAGAGGCCAACAACTATGAATCATTCCTT 60 Query 61 CAAGAAGACATATTCTCGTTTCTCGATCAATCACTTTTCGTCGATCCTCACAGCTCTTTC 120 ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| Sbjct 61 CAAGAAGACATATTCTCGTTTCTTGATCAATCACTTTCCATCGATCCTCACAGCTCTTTC 120 Query 121 ATTGACCCTTTTAAGGATTTTCAAACCCAAAATTGGTTTTCTCTCCAAGACAGCATTGTT 180 ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 121 ATTAACCCTTTTAAGGATTTTCAAACCCAAACTTGGTTTTCTTTCCAAGACAGCATTGTT 180 Query 181 AATCATATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATCCTATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240 Query 241 GCTATCTCTAGTACTTTCTCTCTAGATATATCGAGTGGATGGTGGAACGAGAATAATGGT 300 || ||||||| | | ||| || ||| ||||||||||| || ||||||||| Sbjct 241 GCAATCTCTA--A---------T--ATA-AT-GAGCGGATGGTGGAATGATAATAATGGT 285 Query 301 AACTACAATAACCAGGTCGAACCAAACCTTGATGAAATTTCAAGAACTAATACCATGGGA 360 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 286 AACTACAATAACCAGGTCGAACCAATTCTTGATGATATTTCAAGAACTAATACCATGGGA 345 Query 361 GATCCAAATATGGAGCAAATATTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAACA 417 |||||||| |||||| ||||||||||||||||||||||||| | || |||||||||||| Sbjct 346 GATCCAAAGATGGAGAAAATATTGCATGAAGATGTTAACACAACTATAAAAGAGAAAACA 405 Query 418 AGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGTCATCAATAATATG 477 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || Sbjct 406 AGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGACATCAATAGTTTG 465 Query 478 TCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTT 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 TCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTT 525 Query 538 AACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCT 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 AACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCT 585 Query 598 CACCGTAAGCTCACGAGCCTAAACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGAAC 657 |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 586 CACCGTAAGCTCACGAGCCTTAATGCTCTAATTGCTAATCTCAAGGACTTATTAGGGAAC 645 Query 658 ACGAAGGGGAGAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAG 717 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 ACGGAGGGGAAAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAG 705 Query 718 AAGAAGATGATTGAGGAAGTTCCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAAGA 777 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 706 AAGAAGATGATTGAGGAAGTTCCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAAGA 765 Query 778 CAGGCTTGCTTCAAGGCTAAATACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834 |||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| Sbjct 766 CAGGCTTGCTTCAAGGCTAAATACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 822 > Ahg951664 jgi|Araly1|951664|scaffold_103100001.1 Length=611 Score = 885 bits (479), Expect = 0.0 Identities = 545/576 (95%), Gaps = 7/576 (1%) Strand=Plus/Plus Query 264 AGATAT-ATCGAGTGGATGGTGGAACGAGAATAATGGTAACTACAATAACCAGGTCGAAC 322 |||||| || ||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 18 AGATATAAT-GAGCGGATGGTGGAATGATAATAATGGTAACTACAATAACCAGGTCGAAC 76 Query 323 CAAACCTTGATGAAATTTCAAGAACTAATACCATGGGAGATCCAAATATGGAGCAA-ATA 381 ||| |||||||| |||||||||||||||||||||||||||||||| |||||| || ||| Sbjct 77 CAATTCTTGATGATATTTCAAGAACTAATACCATGGGAGATCCAAAGATGGAG-AAGATA 135 Query 382 TTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAACAAGCCAGAAGAGGATAATTATG 438 |||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| Sbjct 136 TTGCATGAAGATGTTAACACAACTATAAAAGAGAAAACAAGCCAGAAGAGGATAATTATG 195 Query 439 AAGAGGCGATATAGAGAAGATGGAGTCATCAATAATATGTCAAGGGAAATGATGAAGCAG 498 ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| Sbjct 196 AAGAGGCGATATAGAGAAGATGGAGACATCAATAGTTTGTCAAGGGAAATGATGAAGCAG 255 Query 499 TACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTTAACATTGGTGTAACCCTCTTG 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 256 TACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTTAACATTGGTGTAACCCTCTTG 315 Query 559 AAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCTCACCGTAAGCTCACGAGCCTA 618 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 AAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCTCACCGTAAGCTCACGAGCCTT 375 Query 619 AACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGAACACGAAGGGGAGAACGCCCAAG 678 |||||||||||| | |||||||||||||| |||||||||||| |||| | |||||||||| Sbjct 376 AACGCTCTAATTACCAATCTCAAGGACTTATTAGGGAACACGGAGGGAAAAACGCCCAAG 435 Query 679 AGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAGAAGAAGATGATTGAGGAAGTT 738 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 436 AGTAAGCTGAGGAATGCTTTGGAGCTTTTGGAGATGGAGAAGAAGATGATTGAGGAAGTT 495 Query 739 CCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAAGACAGGCTTGCTTCAAGGCTAAA 798 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 496 CCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAAGACAGGCTTGCTTCAAGGCTAAA 555 Query 799 TACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834 ||||||| |||| |||||||||| |||||||||||| Sbjct 556 TACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30841439853 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5