BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67000.1
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332870 jgi|Araly1|332870|fgenesh1_pm.C_scaffold_8002213 327 4e-89
Ahg315617 jgi|Araly1|315617|fgenesh1_pm.C_scaffold_2000650 268 3e-71
> Ahg332870 jgi|Araly1|332870|fgenesh1_pm.C_scaffold_8002213
Length=492
Score = 327 bits (177), Expect = 4e-89
Identities = 353/429 (82%), Gaps = 48/429 (11%)
Strand=Plus/Plus
Query 217 AAGAGCACGAGATCATGGTCTCTGCTCTGCGACAAGTGATATCTAACTCCGGAGCTGACG 276
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 68 AAGAGCACGAGATCATGGTCTCTGCTCTGCAACAAGTGATATCTAACTCCAGAGCT---G 124
Query 277 ACGCGTCATCATCAAACTTGATCATC-A-C-AA-G-CGTTCCGCCTCCAGA--C--G--C 325
|||||||||||||||| |||||| | | | || | | || |||||||||| | | |
Sbjct 125 ACGCGTCATCATCAAATTTGATC-GCAAGCGAAGGTC-TTTCGCCTCCAGACGCTGGCCC 182
Query 326 ---T-G--G-CC-----CT--T-GTCCTCTCTGTGGCGTCGCCGGTTGCTACGGCTGCAC 370
| | | || || | ||||||||||| || || ||||||| | ||||||||
Sbjct 183 TTTTGGAAGCCCATATTCTAATAGTCCTCTCTGTCGCATCATCGGTTGCGAAGGCTGCAC 242
Query 371 ATTACAACGGCCGCACCGAGAGGTAAAGAAGGAGAAGAAATACAAAGGAGTAAGGAAAAA 430
|||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 243 ATTACAACGGCCGCACCGAGAGATAGAGAAGGAGAAGAAATACAAAGGAGTGAGGAAAAA 302
Query 431 ACCATCGGGTAAATGGGCGGCGGAGATATGGGATCCGAGATCGAAATCAAGGAGGTGGCT 490
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 303 GCCATCGGGTAAATGGGCGGCGGAGATATGGGATCCGAGTTCGAAATCAAGGAAGTGGCT 362
Query 491 TGGAACGTTTCTTACGGCGGAGATGGCGGCACAAT-CTTACAATGATGCGGCG-G---CT 545
|||||||||||| ||||| |||| |||||| | | ||||| |||| |||||| | ||
Sbjct 363 TGGAACGTTTCTAACGGCAGAGACGGCGGCG-AGTTCTTACGATGAGGCGGCGCGGAGCT 421
Query 546 -G--AGTA-----TCGAGCAAGACGTGGTAAAACAAACGGAG-AAGGAATTAAACGGCGG 596
| || | || |||||||||||| ||||| ||||||| ||| |||||||||||||
Sbjct 422 TGTCAGGAGAACATC-AGCAAGACGTGGCAAAACGAACGGAGGAAG-AATTAAACGGCGG 479
Query 597 TGGAGATGA 605
||||||||
Sbjct 480 CGGAGATGA 488
> Ahg315617 jgi|Araly1|315617|fgenesh1_pm.C_scaffold_2000650
Length=441
Score = 268 bits (145), Expect = 3e-71
Identities = 222/256 (87%), Gaps = 17/256 (7%)
Strand=Plus/Plus
Query 364 GCTGCACATTACAACGGCCGCACCGAGAGGTAAAGAAGGAGAAGAAATACAAAGGAGTAA 423
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 185 GCTGCACATTACAACGGCCGCACCGAGAGATAGAGAAGGAGAAGAAATACAAAGGAGTGA 244
Query 424 GGAAAAAACCATCGGGTAAATGGGCGGCGGAGATATGGGATCCGAGATCGAAATCAAGGA 483
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 245 GGAAAAAGCCATCGGGTAAATGGGCGGCGGAGATATGGGATCCGAGTTCGAAATCAAGGA 304
Query 484 GGTGGCTTGGAACGTTTCTTACGGCGGAGATGGCGGCACAAT-CTTACAATGATGC-G-G 540
|||||||||||||||||| ||||| |||| |||||| | | ||||| |||| || | |
Sbjct 305 AGTGGCTTGGAACGTTTCTAACGGCAGAGACGGCGGCG-AGTTCTTACGATGAGGCTGCG 363
Query 541 CGG--CT-G--AGTA-----TCGAGCAAGACGTGGTAAAACAAACGGAG-AAGGAATTAA 589
||| || | || | || |||||||||||| ||||| ||||||| ||| ||||||
Sbjct 364 CGGAGCTTGTCAGGAGAACATC-AGCAAGACGTGGCAAAACGAACGGAGGAAG-AATTAA 421
Query 590 ACGGCGGTGGAGATGA 605
||||||| ||||||||
Sbjct 422 ACGGCGGCGGAGATGA 437
Score = 147 bits (79), Expect = 1e-34
Identities = 110/123 (89%), Gaps = 10/123 (8%)
Strand=Plus/Plus
Query 217 AAGAGCACGAGATCATGGTCTCTGCTCTGCGACAAGTGATATCTAACTCCGGAGCTGACG 276
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 68 AAGAGCACGAGATCATGGTCTCTGCTCTGCAACAAGTGATATCTAACTCCAGAGCTGACG 127
Query 277 ACGCGTCATCATCAAACTTGATCATCA--C-AAGCGT-T-CCGCCTCCAGACGCTGGCCC 331
|| |||||||||||||||||| || | ||| || | ||||||||||||||||||||
Sbjct 128 -CG--TCATCATCAAACTTGATCG-CAAGCGAAG-GTCTTCCGCCTCCAGACGCTGGCCC 182
Query 332 TTG 334
|||
Sbjct 183 TTG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22111291860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5