BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G67010.1

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332869 jgi|Araly1|332869|fgenesh1_pm.C_scaffold_8002212           599    6e-171


> Ahg332869 jgi|Araly1|332869|fgenesh1_pm.C_scaffold_8002212
Length=441

 Score =  599 bits (324),  Expect = 6e-171
 Identities = 402/440 (91%), Gaps = 3/440 (1%)
 Strand=Plus/Plus

Query  1    ATGGATTATTCAGAAAATGTTCAAAACAAAAATTTCACCCCTATTTCACAACCTCCTAAC  60
            ||||| |||||| |||||||||||||| |||||||||||| | ||||||||||| || | 
Sbjct  1    ATGGACTATTCAAAAAATGTTCAAAACGAAAATTTCACCCTTGTTTCACAACCTTCTTAT  60

Query  61   TTGACAAGAGACCAAGAACATGCTATCATGGTTTCTACTTTGCGACAAGTGATATCCAAC  120
            ||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct  61   TTGACAAGAGATCAAGAGCATGGTATCATGGTCTCTACTTTGCGACAAGTGATATCCAAC  120

Query  121  ACTGGAGGTGATACGTCATCATCTCACTACATTGCTGCAAGTGAGGCTCTTCCACCTTCG  180
            ||||||||||||||||||||||||||||  |||||   |||||| |||||||||||| ||
Sbjct  121  ACTGGAGGTGATACGTCATCATCTCACTGGATTGC---AAGTGAAGCTCTTCCACCTCCG  177

Query  181  GACGCTGGCCCTTGTCCTCTTTGCGGCGTCACCAGTTGCTACGGGTGCGCATTCCCACAG  240
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  178  GACGCTGGCCCTTGTCCTCTTTGCGGCGTCACCGGTTGCTACGGGTGCGCATTCCCACGG  237

Query  241  CATGAAGAGATTAAGCAGGAGAAGAAGCATAAAGGAGTGAGGAAGAAGCCATCAGGAAAA  300
            ||||||||| | ||| ||||||| || || ||||||||||||||||||||||||||||||
Sbjct  238  CATGAAGAGGTAAAGAAGGAGAAAAAACACAAAGGAGTGAGGAAGAAGCCATCAGGAAAA  297

Query  301  TGGTCGGCGGAAATATGGGATCCGAGTACAAGAACAAGGAGGTGGCTTGGAACGTTTCCG  360
            ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||| 
Sbjct  298  TGGTCTGCGGAAATATGGGATCCGAGTATGAGAGCAAGGAGGTGGCTTGGAACGTTTCCA  357

Query  361  ACGGCAGAGATGGCAGCGGATGCTTACGATGAGGCAGCGGCTGCGCTTGTCGAAAAAAGA  420
            ||||| |||||||||||| |||||||||||||||||||||||| |||||| | |||||||
Sbjct  358  ACGGCGGAGATGGCAGCGCATGCTTACGATGAGGCAGCGGCTGAGCTTGTTGGAAAAAGA  417

Query  421  TCAGCGAGACGTGGCTCAAA  440
            ||||||||||||||| ||||
Sbjct  418  TCAGCGAGACGTGGCACAAA  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17742348885


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5