BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67010.1 Length=489 Score E Sequences producing significant alignments: (Bits) Value Ahg332869 jgi|Araly1|332869|fgenesh1_pm.C_scaffold_8002212 599 6e-171 > Ahg332869 jgi|Araly1|332869|fgenesh1_pm.C_scaffold_8002212 Length=441 Score = 599 bits (324), Expect = 6e-171 Identities = 402/440 (91%), Gaps = 3/440 (1%) Strand=Plus/Plus Query 1 ATGGATTATTCAGAAAATGTTCAAAACAAAAATTTCACCCCTATTTCACAACCTCCTAAC 60 ||||| |||||| |||||||||||||| |||||||||||| | ||||||||||| || | Sbjct 1 ATGGACTATTCAAAAAATGTTCAAAACGAAAATTTCACCCTTGTTTCACAACCTTCTTAT 60 Query 61 TTGACAAGAGACCAAGAACATGCTATCATGGTTTCTACTTTGCGACAAGTGATATCCAAC 120 ||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||||||| Sbjct 61 TTGACAAGAGATCAAGAGCATGGTATCATGGTCTCTACTTTGCGACAAGTGATATCCAAC 120 Query 121 ACTGGAGGTGATACGTCATCATCTCACTACATTGCTGCAAGTGAGGCTCTTCCACCTTCG 180 |||||||||||||||||||||||||||| ||||| |||||| |||||||||||| || Sbjct 121 ACTGGAGGTGATACGTCATCATCTCACTGGATTGC---AAGTGAAGCTCTTCCACCTCCG 177 Query 181 GACGCTGGCCCTTGTCCTCTTTGCGGCGTCACCAGTTGCTACGGGTGCGCATTCCCACAG 240 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 178 GACGCTGGCCCTTGTCCTCTTTGCGGCGTCACCGGTTGCTACGGGTGCGCATTCCCACGG 237 Query 241 CATGAAGAGATTAAGCAGGAGAAGAAGCATAAAGGAGTGAGGAAGAAGCCATCAGGAAAA 300 ||||||||| | ||| ||||||| || || |||||||||||||||||||||||||||||| Sbjct 238 CATGAAGAGGTAAAGAAGGAGAAAAAACACAAAGGAGTGAGGAAGAAGCCATCAGGAAAA 297 Query 301 TGGTCGGCGGAAATATGGGATCCGAGTACAAGAACAAGGAGGTGGCTTGGAACGTTTCCG 360 ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 298 TGGTCTGCGGAAATATGGGATCCGAGTATGAGAGCAAGGAGGTGGCTTGGAACGTTTCCA 357 Query 361 ACGGCAGAGATGGCAGCGGATGCTTACGATGAGGCAGCGGCTGCGCTTGTCGAAAAAAGA 420 ||||| |||||||||||| |||||||||||||||||||||||| |||||| | ||||||| Sbjct 358 ACGGCGGAGATGGCAGCGCATGCTTACGATGAGGCAGCGGCTGAGCTTGTTGGAAAAAGA 417 Query 421 TCAGCGAGACGTGGCTCAAA 440 ||||||||||||||| |||| Sbjct 418 TCAGCGAGACGTGGCACAAA 437 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17742348885 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5