BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67020.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496899 jgi|Araly1|496899|fgenesh2_kg.8__2715__AT5G67020.1 2039 0.0
Ahg485385 jgi|Araly1|485385|fgenesh2_kg.5__1377__AT3G50340.1 846 0.0
> Ahg496899 jgi|Araly1|496899|fgenesh2_kg.8__2715__AT5G67020.1
Length=1355
Score = 2039 bits (1104), Expect = 0.0
Identities = 1260/1335 (94%), Gaps = 11/1335 (1%)
Strand=Plus/Plus
Query 42 CTCTCACCCAAAAATTTCAAAAATTCTAACATCTTTCTAAAAATTTGCTCTTTCTCTTAC 101
|||||| |||||| ||||||| || || ||| |||||||||||| ||||||||||||| |
Sbjct 25 CTCTCA-CCAAAATTTTCAAATATGCTTACAACTTTCTAAAAATCTGCTCTTTCTCTTTC 83
Query 102 CTGAGTGAAACATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAG 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 CTGAGTGAAACATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAG 143
Query 162 CCGGTCTCCGCCGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTACGATCAGAAACA 221
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 144 CCGGTCTCCGCCGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTATGATCAGAAACA 203
Query 222 GCCTTCAATCTTTCTCCCCTTTCGCCGATAAAGTAATCAATCATCTTAAAAATTCAGGTA 281
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 204 GCCTTCAATCTTTCTCCCCTTTCGCTGATAAAGTAATCAATCATCTTAAAAATTCAGGTA 263
Query 282 TCAAAATCCAACCAGGTCTCTCCGACACCGAGTTTGCCCGAGTCGAAGCCGAGTTTGGTT 341
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TCAAAATCCAACCGGGTCTCTCCGACACCGAGTTTGCCCGAGTCGAAGCCGAGTTTGGTT 323
Query 342 TCACCTTCCCACCGGACCTCCGTGTTATCCTCTCCGCCGGTCTCTCCGTCGG-CGCAGGA 400
|||| |||||||||||| |||||||||||||| |||||||| |||||||||| | |||||
Sbjct 324 TCACTTTCCCACCGGACATCCGTGTTATCCTCACCGCCGGTATCTCCGTCGGTC-CAGGA 382
Query 401 TTCCCAGACTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGATTTACC- 459
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 383 TTCCCAGATTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGAACTACCC 442
Query 460 AGTCGCCGCTGTATCGTTCCAAATCGCTAAAAACAGTCTCTGGTGCAAATCTTGGGGCTT 519
| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 443 A-TCGCCGCCGTATCGTTCCAAATCGCCAAAAACAGTCTCTGGTGCAAATCTTGGGGCTT 501
Query 520 GAAACCACCCGACCCGGAAAAAGCTTTAAGGGTCGCGAGAAACGCCTTAAAAAGAGCTCC 579
|||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||
Sbjct 502 TAAACCACCCGACCCGGGAAAAGCTTTACGGGTCGCGAGAAACGCCTTAAGAAGAGCTCC 561
Query 580 TTTACTGATTCCCATCTTTGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCTGGTAA 639
|||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 562 TTTAATGATCCCCATCTTCGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCGGGTAA 621
Query 640 TCCGGTTTTCTTCATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTATCCGAGTT 699
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 622 TCCGGTTTTCTTCATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTTTCCGAGTT 681
Query 700 CTTCGAGCGTGAATCTGCTTTTCGAAGCTCTGAATTCTTCCCGAGAATTCTCACTAAGCA 759
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 682 CTTCGAGCGAGAATCTGCTTTTCGAAGCTCCGAATTCTTCCCGAGAATTCTCACTAAGCA 741
Query 760 ACGTTCAGTGAGCGAGAAATCAGCTGGATCATCCTCGAATTTTTCCCGGAGAAGCTTAGA 819
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 742 ACGTTCAGTGAGCGAGAAATCAGCTGGATCATCCTCGAATATTTCCCGGAGAAGCTTAGA 801
Query 820 TTTGGGTCGGGCTAATGGTGC-GGGTAAGTCGAGATGGGTTGAGTTTTGGAGTGACGCGG 878
|| |||||||||||| || | ||||||||||||||||||||| || ||||||||||| |
Sbjct 802 TTCGGGTCGGGCTAACGG-GATGGGTAAGTCGAGATGGGTTGAATTCTGGAGTGACGCTG 860
Query 879 CGGTTGATCGTTGCCGGCGAAACTCTGCCTCCAC-ATCATCGTCGTCTTCTTCATCGCCG 937
|||| |||||||||||||||||||| ||||| || ||| ||||| |||||||||||||||
Sbjct 861 CGGTGGATCGTTGCCGGCGAAACTCCGCCTC-ACCATCGTCGTCATCTTCTTCATCGCCG 919
Query 938 GACCTTCCCAAAACAGAGACTCCGAAATGGGTGAACCAGTACGTAAACCGGATCGGTTCG 997
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 920 GACCTTCCCAAAACAGAGACTCCGAAATGGGTAAACCAGTACGTAAACCGGATCGGTTCG 979
Query 998 GTTTTAAGAAGAGGCGGGTGGAGCGAATCCGATATTGATGAGATTATCCACGTGTCAGCA 1057
| || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 980 ATATTGAGAGGAGGCGGGTGGAGCGAATCCGATATTGATGAGATAATCCACGTGTCAGCA 1039
Query 1058 TCGGGTTTCTTTGAGGGCGAAATGGTAATTATCGATAATCAAACTGTTCTTGATGTGCTT 1117
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1040 TCGGGTTTCTTTGAGGGTGAAATGGTAATTATGGATAATCAAACTGTTCTTGATGTGCTT 1099
Query 1118 CTATTAAAAGCGGGTCGGATCTCAGAGTCGCTCCGTAAATCCGGGTGGAGCTCCGAAGAA 1177
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1100 TTATTAAAAGCGGGTCGGATCTCTGAGTCGCTCCGTAAATCCGGTTGGAGCTCCGAAGAA 1159
Query 1178 GTCTCGGACGCGCTTGGGTTTGATTTTCGACCGGAAAAGGAGAGGAAACCGGTTAAGAAA 1237
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1160 GTCTCGGACGCGCTTGGGTTTGGTTTTCGACCGGAAAAGGAGAGGAAACCGGTTCAGAAA 1219
Query 1238 CTCTCGCCTATGCTCGTCGAACAATTCGAAAAACTTGCTGAATGGGTTTCTCAGTCATGA 1297
||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1220 CTCTCGCCTGTGCTCGTCGAACAATTCGAAAAACTTGCTGAATGGGTTTCCCGGTCATGA 1279
Query 1298 AACACATTACAAATTTACATTGGAATCATAGTAATGGTGATAT-AATTGTATATTGATTA 1356
||||||||||| ||||||||||||||| |||||||| | |||| |||| || || ||||
Sbjct 1280 AACACATTACATATTTACATTGGAATCGTAGTAATGATAATATCAATTATAAATA-ATTA 1338
Query 1357 CTGATGTTTTGCTTC 1371
|||||||||||||||
Sbjct 1339 CTGATGTTTTGCTTC 1353
> Ahg485385 jgi|Araly1|485385|fgenesh2_kg.5__1377__AT3G50340.1
Length=1469
Score = 846 bits (458), Expect = 0.0
Identities = 995/1243 (80%), Gaps = 81/1243 (7%)
Strand=Plus/Plus
Query 109 AAACATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAGCCGGTCT 168
||| |||||||||||||| ||||||||||||||| | | || |||||||| || |||||
Sbjct 121 AAAAATGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCGGGTCT 180
Query 169 CCGCCGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTACGATCAGAAACAGCCTTC- 227
||| |||||||| |||||||||||||| ||| | ||||| ||| | |||||||||| ||
Sbjct 181 CCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACGACTCCAACGGTTAGAAACAGCC-TCG 239
Query 228 AATCTTTCTCCCCTTTCGCCGATA-AAGTAATCAATCA-TCTTA-AAAATTC-AGGTATC 283
|||||||| || ||||||| | |||||||| ||| |||| | | ||| ||| |||
Sbjct 240 TCTCTTTCTCATCTCTCGCCGA-ACAAGTAATC--TCACACTTACACACTTCAAGG-ATC 295
Query 284 AAAATCCAACCAGGTCTCTCCGACACCGAGTTTGCCCGAGTCGAAGCCGAGTTTGGTTTC 343
|| ||||||| ||||| ||||| |||| || ||| || |||||| ||||| | |||
Sbjct 296 CAAGTCCAACCGGGTCTAACCGACTCCGAATTCGCCAAAGCCGAAGCAGAGTTCGCATTC 355
Query 344 ACCTTCCCACCGGACCTCCGTGTTA-TCCTCTCCGCCGGTCTCT-CC-GTCGGCGCAGGA 400
| ||||||||||||||||||| | | ||| |||||||| | | || |||||||| ||
Sbjct 356 TCTTTCCCACCGGACCTCCGTG-CAGTTCTCACCGCCGGT-T-TACCAGTCGGCGCCGGG 412
Query 401 TTCCCAGACTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGAT-TTACC 459
|| ||||||||||||||||||||||||||||| || || | || ||||||||| || ||
Sbjct 413 TTTCCAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTTAGGGCTATGATCGATCTT-CC 471
Query 460 -AGTCGCCGCTGTATCGTTCCAAATCGCTAAAAACAGTCTCTGGTGCAAATCTTGGGGCT 518
| ||||||| || ||||| || ||||| | ||||| ||| ||| ||||||||||||| |
Sbjct 472 TA-TCGCCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTTTGGAGCAAATCTTGGGG-T 529
Query 519 TGAA-ACCACCCGACCCGGAAAAAGCTTTAAGGGTCGCGAGAAACGCCT-TAAAAAGAGC 576
| || |||| |||||||||||||||||||| ||||||||||||| | || | ||||||||
Sbjct 530 TTAAGACCATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATG-CTCTCAAAAGAGC 588
Query 577 TCCTTT-ACTGATTCCCATCTTTGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCTG 635
|||||| | |||| || ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 589 TCCTTTGA-TGATACCAATCTTTGATCACTGCTATATTCCTTGTAACCCGTCTTTAGCGG 647
Query 636 GTAATCCGGTTTTCT-TCATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTATCC 694
|||| |||||||| | | || |||||||| ||||| |||||||||||||||||||||||
Sbjct 648 GTAACCCGGTTTTTTAT-ATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTATCT 706
Query 695 GAGTTCTTCGAGCGTGAATCTGCT-TTTCGAAGCTCTGA-AT-TCTTCCCGA-GAATTCT 750
|| |||||||||||||| |||| | ||| || | ||||| | | | || | | || |
Sbjct 707 GATTTCTTCGAGCGTGAGTCTG-TGTTTAGAGGGTCTGACACGTGT-CCGGTTGT-TT-T 762
Query 751 CACTAAGCAACGTTCAGTGAGCGAGAAATCAGCTGGATCATC--C-TC------G---AA 798
|| ||||| ||||| ||||| |||||||||||||| || || | || | ||
Sbjct 763 AACGAAGCAGCGTTCGGTGAGTGAGAAATCAGCTGGGTCGTCGTCGTCTTCTTCGTCGAA 822
Query 799 TTTTTCCCGGA-GAAGCTTAGATTTGGGTCGGGCTAATGG-TGCGGGTA-AGTCGAGATG 855
|||||| | | || | ||||||| ||||| || | | || | || ||| | |||||||
Sbjct 823 TTTTTCAAGAATGA-GTTTAGATTCGGGTCAGGTTCACGGGT-CGAGTACAC-CGAGATG 879
Query 856 GGTTGAGTTTTGGAGTGACGCGGCGGTTGATCGTTGCCGGCGAAACTCTGCCTCCAC-AT 914
|||||||||||||||||||||| | || |||||| | || |||||||||| || | ||
Sbjct 880 GGTTGAGTTTTGGAGTGACGCGACCGTGGATCGTCGGAGGAGAAACTCTGCTTCTTCTAT 939
Query 915 CATCGTCGTCT---TCTTCATCGCCGGACC--T-TC--------CCAAAA-CAGAGACTC 959
|||||||| |||||||||||||| | || |||| | | ||||| |
Sbjct 940 G-TCGTCGTCACACTCTTCATCGCCGGAGAGATATCTAGAATTACCAAGATCCGAGACAC 998
Query 960 CGAAATGGGT-GAACCAGTACGTAAACCGGATCGGTTCGGTTTTAAGAAGAGGCGGGTGG 1018
|||||||||| || | | ||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 999 CGAAATGGGTCGA-CGATTACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGG 1057
Query 1019 AGCGAATCCGATATTGATGAGATTATCCACGTGTCAGCATCGGGTTTCTTTGAGGGCGAA 1078
||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||| |||
Sbjct 1058 AGCGAATCCGACGTTGATGATATTGTCCACGTGTCAGCATCTGGTTTCTTTGAGGGTGAA 1117
Query 1079 ATGGTAATTATCGATAATCAAACTGTTCTT-GATGTGCTT-CTATTAAAAGCGGGTCGGA 1136
||||||||| | ||||||||| | ||| || |||| || || || ||||||||||||
Sbjct 1118 ATGGTAATTTTAGATAATCAAGCGGTT-TTAGATGCA-TTGCTTTTGAAAGCGGGTCGGT 1175
Query 1137 TCTCAGAGTCGCTCCGTAAATCCGGGTGGAGCTCCGAAGAAGTCTCGGACGCGCTTGGGT 1196
|||| ||||||||||| ||| | || ||||||||||||||||| ||||| || ||||| |
Sbjct 1176 TCTCGGAGTCGCTCCGAAAAGCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTT 1235
Query 1197 TTGATTTTCGACCGGAAAAGGAGAGGAAACCGGTTAAGAAACTCTCGCCT-ATGCTCGTC 1255
|||||||||||||||| |||| || ||||||||| ||||| || || ||| | || |||
Sbjct 1236 TTGATTTTCGACCGGAGAAGGGGAAGAAACCGGTGAAGAAGCTATCTCCTGAA-CTTGTC 1294
Query 1256 GAAC-AATTCGAAAAACTTGCTGAATGGGTTTCTCAGTCATGA 1297
||| ||| || ||||||||||| | |||||||| |||||||
Sbjct 1295 CAACGAAT-CGGGAAACTTGCTGAGTCGGTTTCTCGGTCATGA 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5