BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67030.1
Length=2385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496897 jgi|Araly1|496897|fgenesh2_kg.8__2713__AT5G67030.1 3485 0.0
> Ahg496897 jgi|Araly1|496897|fgenesh2_kg.8__2713__AT5G67030.1
Length=2278
Score = 3485 bits (1887), Expect = 0.0
Identities = 2178/2312 (94%), Gaps = 46/2312 (2%)
Strand=Plus/Plus
Query 6 CCTCcttcttcttcaaaccaatttcttcttcttcttct-ctC-A-GGTTTGAGTCTGAGG 62
||||||||||||||||||| |||||||||||||||||| ||| | ||| ||||| |||
Sbjct 1 CCTCCTTCTTCTTCAAACC-ATTTCTTCTTCTTCTTCTCCTCTATTGTTCGAGTCAGAGT 59
Query 63 CATCACAACAGATAAAGTCTTGAACTTTGATCAAGAATTCTAAACGGAGTTTTTGCTCTT 122
||||| |||||||||||||||| | ||| | |||||| ||||||| | ||
Sbjct 60 CATCATAACAGATAAAGTCTTG-A-TTT--T--TGAATTCCAAACGGA------G---TT 104
Query 123 CTCGTCGGTGAAAGAAAAATCGAGATGGGTTCAACTCCGTTTTGCTACTCTATCAATCCA 182
| | | | |||||||||||||||||||| ||||||||| || |||||||||
Sbjct 105 -T--T---T------ACAATCGAGATGGGTTCAACTCTGTTTTGCTATTCGATCAATCCA 152
Query 183 TCTCCATCAAAGCTTGATTTCACGAGGACCCATGTGTTTAGTCCTGTTTCTAAACAGTTT 242
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 153 TCTCCATCAAAGCTTGATTTCACGAGGACCCATGTGTTTAGTCCCGTTGCTAAACAGTTT 212
Query 243 TACTTAGATTTATCATCGTTTTCCGGAAAA-C--CCGGAGGAGTATCTGGGTTTAGGAGC 299
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 213 TACTTAGATTTATCATCGTTTTCCGGAAAATCTGGTGGAGGATTATCTGGGTTTAGGAGC 272
Query 300 CGTCGAGCTTTGCTCGGAGTAAAGGCGGCGACGGCGTTAGTTgagaaggaggagaagaga 359
|| | || || ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 273 CGGAAAACTCTGGTCGGAGTAAAGGCGGCGACGGCGTTGGTTGAGAAGGAGGAGAAGAGA 332
Query 360 gaggcggtgacggagaagaagaagaaATCGAGGGTTTTAGTTGCCGGAGGTGGAATCGGA 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GAGGCGGTGCCGGAGAAGAAGAAGAAATCGAGGGTTTTAGTTGCCGGAGGTGGAATCGGA 392
Query 420 GGATTGGTGTTTGCTTTAGCGGCTAAGAAGAAAGGATTCGATGTGTTAGTGTTTGAGAAA 479
|| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 393 GGTTTGGTGTTTGCTTTAGCTGCCAAGAAGAAAGGATTCGATGTGTTAGTGTTTGAAAAA 452
Query 480 GATTTGAGTGCTATAAGAGGAGAAGGAAAATACAGAGGCCCGATTCAAATACAGAGCAAC 539
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 453 GATTTGAGTGCTATAAGAGGAGAAGGACAATACAGAGGTCCGATTCAAATACAGAGCAAC 512
Query 540 GCTTTAGCTGCTTTGGAAGCTATTGATATTGAAGTTGCTGAACAAGTTATGGAAGCTGGG 599
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 513 GCTTTAGCTGCTTTGGAAGCTATTGATACTGATGTTGCTGAACAAGTTATGGAAGCTGGT 572
Query 600 TGTATCACTGGTGATCGGATTAACGGTCTCGTTGATGGTATCTCTGGTACTTGGTATGTA 659
||||| || ||||||||||||||||||||||| || ||| ||||||||| |||||||||
Sbjct 573 TGTATTACCGGTGATCGGATTAACGGTCTCGTCGACGGTGTCTCTGGTAGTTGGTATGTC 632
Query 660 AAGTTTGATACTTTCACTCCTGCGGCGTCACGGGGACTTCCTGTGACTAGAGTAATTAGT 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 633 AAGTTTGATACTTTCACTCCTGCGGCGTCACGGGGACTTCCTGTGACTCGAGTAATTAGT 692
Query 720 AGAATGACTCTGCAGCAGATTCTAGCACGTGCGGTTGGAGAAGATGTGATTAGAAACGAG 779
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 693 AGAATGACTCTGCAGCAGATTCTAGCACGCGCAGTTGGAGAAGATGTGATTAGAAACGAG 752
Query 780 AGTAATGTTGTTGATTTTGAAGATTCTGGAGATAAGGTTACTGTGGTACTCGAGAATGGT 839
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 753 AGTAATGTTGTTGATTTTGAAGATTCTGGAGATAAGGTAACTGTGGTGCTCGAGAATGGT 812
Query 840 CAACGCTATGAAGGTGATCTGCTTGTGGGTGCAGATGGCATTTGGTCTAAGGTGAGAAAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CAACGCTATGAAGGTGATCTGCTTGTGGGTGCAGATGGCATTTGGTCTAAGGTGAGAAAT 872
Query 900 AATTTGTTTGGCCGTAGTGAAGCTACTTATTCAGGCTACACTTGTTACACGGGGATTGCA 959
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 873 AATTTGTTTGGTCGTAGTGAAGCTACTTATTCAGGCTACACTTGTTACACGGGGATCGCA 932
Query 960 GATTTTATACCAGCGGATATCGAGTCTGTTGGCTACCGGGTTTTCTTGGGACACAAACAG 1019
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 933 GATTTTGTACCTGCGGATATCGAGTCTGTTGGCTACCGGGTTTTCTTGGGACATAAACAG 992
Query 1020 TACTTTGTTTCTTCGGATGTTGGTGGTGGAAAAATGCAATGGTATGCATTTCACGAGGAA 1079
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 993 TACTTTGTTTCTTCTGATGTTGGTGGAGGAAAAATGCAATGGTATGCATTTCACGAGGAA 1052
Query 1080 CCAGCTGGTGGGGCTGATGCTCCAAATGGTATGAAGAAAAGGTTGTTTGAAATATTTGAC 1139
||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1053 CCAGCTGGTGGGGTTGATACTCCAAATGGTATGAAGAAAAGATTGTTTGAAATATTTGAC 1112
Query 1140 GGTTGGTGCGACAATGTACTCGACTTGTTGCATGCGACTGAGGAGGAAGCCATTCTGAGA 1199
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1113 GGTTGGTGCGACAATGTACTCGACTTGTTACATGCGACTGAGGAGGATGCCATTCTGAGA 1172
Query 1200 AGAGATATTTATGATAGAAGTCCTGGTTTTACTTGGGGTAAAGGGCGTGTTACGCTGCTC 1259
|||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1173 AGAGATATCTATGATAGAAGTCCTAGTTTTACTTGGGGTAAAGGTCGTGTTACGCTGCTC 1232
Query 1260 GGGGATTCTATCCATGCGATGCAGCCAAATATGGGTCAAGGTGGATGCATGGCCATTGAG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GGGGATTCTATCCATGCGATGCAGCCAAATATGGGTCAAGGTGGATGCATGGCCATTGAG 1292
Query 1320 GATAGTTTTCAACTAGCATTGGAGCTTGATGAAGCATGGAAACAGAGTGTTGAAACGACT 1379
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | |
Sbjct 1293 GATAGTTTTCAACTAGCATTGGAGCTTGAAGAAGCATGGAAACAGAGTGTTGGAACTAAT 1352
Query 1380 ACACCTGTTGATGTTGTTTCCTCTTTGAAAAGATATGAGGAATCTAGAAGACTGAGAGTC 1439
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1353 ACACCTGTTGATGTTGTTTCCTCTTTGAAAAGATATGAAGAATCTAGAAGACTCAGAGTC 1412
Query 1440 GCTATTATCCATGCAATGGCGAGGATGGCTGCAATTATGGCTTCCACTTACAAAGCATAC 1499
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 GCTATTATCCATGGGATGGCGAGGATGGCTGCAATTATGGCTTCCACTTACAAAGCATAC 1472
Query 1500 TTAGGTGTTGGGCTTGGTCCTCTGTCTTTCTTGACAAAGTTTAGAGTACCACATCCAGGA 1559
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1473 TTAGGTGTTGGGCTTGGTCCTCTTTCTTTCTTGACAAAGTTTAGAGTACCGCATCCCGGA 1532
Query 1560 AGAGTTGGTGGTAGATTCTTCGTTGACATTGCTATGCCATCGATGCTTGACTGGGTCCTT 1619
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1533 AGAGTTGGTGGGAGATTCTTCGTTGACATTGCTATGCCATTGATGCTTGACTGGGTCCTT 1592
Query 1620 GGAGGTAACAGTGAAAAACTCCAAGGAAGGCCACCTAGTTGCAGACTCACTGACAAAGCC 1679
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1593 GGAGGTAACAGTGAAAAACTCGAAGGAAGGCCACCTAGTTGCAGACTCACTGACAAAGCC 1652
Query 1680 GATGACCGGCTTCGAGAGTGGTTTGAAGATGACGATGCTCTTGAACGTACTATAAAGGGA 1739
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1653 GATGATCGGCTTCGAGAGTGGTTTGAAGATGACGACGCTCTTGAACGCACTATAAAGGGA 1712
Query 1740 GAATGGTATCTAATTCCACACGGCGACGATTGTTGCGTTTCGGAAACATTATGTCTAACC 1799
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1713 GAATGGTATCTAATTCCACACGGCGAAGATTGTTGTGTTTCGGAAACATTATGTCTAACC 1772
Query 1800 AAAGATGAAGATCAACCTTGCATCGTCGGAAGCGAACCAGATCAAGATTTTCCTGGAATG 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 AAAGATGAAGATCAACCTTGCATCGTCGGAAGCGAACCAGATCAAGATTTTCCTGGAATG 1832
Query 1860 CGCATTGTGATCCCTTCGTCTCAGGTTTCGAAGATGCATGCTCGTGTGATTTACAAAGAC 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 CGCATTGTGATCCCTTCGTCTCAGGTTTCGAAGATGCATGCTCGTGTGATTTACAAAGAC 1892
Query 1920 GGAGCTTTCTTCTTGATGGATCTTCGAAGCGAACACGGAACCTATGTGACCGATAACGAA 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 GGAGCTTTCTTCTTGATGGATCTTCGAAGCGAACACGGAACCTATGTGACCGATAACGAA 1952
Query 1980 GGAAGAAGATATAGAGCAACACCGAATTTTCCCGCGCGGTTTAGATCGTCCGACATCATC 2039
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 GGAAGAAGATATAGAGCGACACCGAATTTTCCCGCGCGGTTTAGATCGTCCGACATCATC 2012
Query 2040 GAGTTTGGTTCAGATAAGAAGGCGGCGTTTAGGGTGAAAGTAATCAGGAAAACTCCGAAA 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2013 GAGTTTGGTTCAGATAAGAAGGCGGCGTTTAGGGTGAAAGTAATCAGGAAAACTCCGAAA 2072
Query 2100 TCGACGAGGAAGAATGAGAGTAACAACGATAAATTACTTCAGACAGCTTGAAATAAGTAA 2159
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 2073 TCGACGAGGAAGAATGAGAGTAAC---GATAAATTACTTCAGACAGCTTGAAATTAGTAA 2129
Query 2160 ACCGATGGTGAAATTAAGTAATTTTAATCGGTTTGGCAGATAATTTGAGTAGTAATTTTC 2219
|||||||||||||||||||| ||||| ||||||||||||||| |||| ||||| ||||||
Sbjct 2130 ACCGATGGTGAAATTAAGTA-TTTTA-TCGGTTTGGCAGATATTTTGTGTAGTCATTTTC 2187
Query 2220 TCAAAAGaaaaaaaa-----TCTGCTTTCAGCTATTCCTTGCATGACAATGTATATATAG 2274
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 2188 TCAAAAGAAAAAAAAAAAAATCTGCTTTCAGCTATTCCTTGCATTACAATGTATATATAG 2247
Query 2275 GTCTGAAACAAAAT-ATAAATTATACAAGACA 2305
| ||||||||||| |||| | ||||||||||
Sbjct 2248 GCCTGAAACAAAAAGATAAGT-ATACAAGACA 2278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89854887955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5