BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67040.1
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331872 jgi|Araly1|331872|fgenesh1_pm.C_scaffold_8001215 383 7e-106
Ahg917467 jgi|Araly1|917467|Al_scaffold_0008_2218 377 3e-104
Ahg951522 jgi|Araly1|951522|scaffold_803409.1 252 2e-66
> Ahg331872 jgi|Araly1|331872|fgenesh1_pm.C_scaffold_8001215
Length=1098
Score = 383 bits (207), Expect = 7e-106
Identities = 357/429 (83%), Gaps = 11/429 (3%)
Strand=Plus/Plus
Query 1 ATGGGTTCACTGCATCTCAACAGCAACAACAACAAGCTCAAGTATCAAA-A-ACTGCGCC 58
|||||||| ||| |||| ||| |||||| || || |||||||| ||| | | | ||||
Sbjct 586 ATGGGTTCTCTGTATCT---CAGTAACAACGACGAGATCAAGTAT-AAAGAGA-TACGCC 640
Query 59 TCT-CCAACCTCCCCAAGATTCCTGACGCAGGTCGGGAGATGTTGGATCAATGTTTCATG 117
| | ||||| || |||||||| || |||||| |||||||||| ||| |||||| ||||
Sbjct 641 T-TAGAAACCTGCCTAAGATTCCAGAGGCAGGTTGGGAGATGTTAGATAAATGTTCCATG 699
Query 118 AGCAAGCACTTGGTGGAATCTCCCTCTGGTGAACTTTTCTTGGTCAACTGGTACGCACAA 177
| ||| ||||| ||||||||||||| ||||||||||||||| |||| |||||| ||||
Sbjct 700 ACCAACCACTTAGTGGAATCTCCCTGTGGTGAACTTTTCTTCATCAAGTGGTACACACAG 759
Query 178 TG-CATTCACACAGAGGAAAAAGACGGAGAAGTGGAAGGTCTCCACAGCAAAACCAAGCG 236
|| | |||||| |||||| |||| || || ||||| | ||||||||| || |||||
Sbjct 760 TGTC-TTCACAAAGAGGACGAAGATGGGGATTTGGAATTTATCCACAGCAGTACTAAGCG 818
Query 237 GTTCATGGTCTTTAGGGAAGATGAGAAGAGCAAAGACTTTAGTTACACGGAAGATATTGG 296
|||||||||||||||| |||||| || ||||||||||||| ||||||| |||||||||||
Sbjct 819 GTTCATGGTCTTTAGGCAAGATGGGACGAGCAAAGACTTTTGTTACACTGAAGATATTGG 878
Query 297 AGATCTCTGCATCTTCCTTGGCGCAAGTGAAGCGTTCTGCCTCACGGCAAGCATGTACCC 356
||||||||||||||||||| ||| |||||||| ||||| ||||||||||| ||| |||
Sbjct 879 AGATCTCTGCATCTTCCTTAGCGGGAGTGAAGCCTTCTGTGTCACGGCAAGCCTGTCCCC 938
Query 357 GGGGCTTAAACCTAACTCTATCTATTACATTGGCCATGGTCTTGGTTCATACGATCTAAC 416
|||||| ||||||||||| ||||||||| |||||| | | |||||||| ||||||||| |
Sbjct 939 GGGGCTCAAACCTAACTCCATCTATTACCTTGGCCCTAGACTTGGTTCTTACGATCTAGC 998
Query 417 CTCTGGTAC 425
||||||||
Sbjct 999 TTCTGGTAC 1007
> Ahg917467 jgi|Araly1|917467|Al_scaffold_0008_2218
Length=1086
Score = 377 bits (204), Expect = 3e-104
Identities = 350/421 (83%), Gaps = 8/421 (2%)
Strand=Plus/Plus
Query 21 CAGCAACAACAACAAGCTCAAGTATCAAAAAC-TGCGCCTCTC-CAACCTCCCCAAGATT 78
|||||||||| | ||| | |||||| || || | ||||| || ||||| || |||||
Sbjct 594 CAGCAACAACTTCGAGCCCGAGTATC-AACACTTACGCCT-TCGAAACCTGCCTAAGATC 651
Query 79 CCTGACGCAGGTCGGGAGATGTTGGATCAATGTTTCATGAGCAAGCACTTGGTGGAATCT 138
|| || | |||| |||||||||||||| |||||||||||| | | ||||| ||||| |||
Sbjct 652 CCAGAGGTAGGTTGGGAGATGTTGGATAAATGTTTCATGACCCACCACTTAGTGGAGTCT 711
Query 139 CCCTCTGGTGAACTTTTCTTGGTCAACTGGTACGCACAATGCATTCACACAGAGGAAAAA 198
|||||||||||| ||||||| |||| ||||| |||| |||||||||| |||||| |||
Sbjct 712 CCCTCTGGTGAAATTTTCTTCATCAAGTGGTATACACAGTGCATTCACAAAGAGGACAAA 771
Query 199 GACGGAGAAGTGGAAGGTCTCCACAGCAAAACCAAGCGGTTCATGGTCTTTAGGGAAGAT 258
|| || || ||||| | ||||||||| ||||||||||||||| |||||||| |||||
Sbjct 772 GATGGGGATTTGGAATATATCCACAGCAGTACCAAGCGGTTCATGATCTTTAGGCAAGAT 831
Query 259 GAGAAGAGCAAAGACTTTAGTTACACGGAAGATATTGGAGATCTCTGCATCTTCCTTGGC 318
| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 832 GGGATGAGCAAAGACTTTTGTTACACGGAAGATATTGGAGATCTCTGCATCTTCCTTAGT 891
Query 319 GCA-AGTGAAGCGTTCTGCCTCACGGCAAGCATGTACCCGGGGCTTAAACCTAACTCTAT 377
| | |||||||| ||||| ||| |||||||| ||||||| |||| ||||||||||| ||
Sbjct 892 G-AGAGTGAAGCCTTCTGTCTCTCGGCAAGCTTGTACCCTAGGCTCAAACCTAACTCCAT 950
Query 378 CTATTACATTGG-CCATGGTCTTGGTTCATACGATCTAACCTCTGGTACGGTCCATTCCT 436
|||||||||||| || | | |||||||| |||||||| | |||||||||| || | |||
Sbjct 951 CTATTACATTGGTCC-TAGACTTGGTTCTTACGATCTGGCTTCTGGTACGGACCGTCCCT 1009
Query 437 T 437
|
Sbjct 1010 T 1010
> Ahg951522 jgi|Araly1|951522|scaffold_803409.1
Length=508
Score = 252 bits (136), Expect = 2e-66
Identities = 165/179 (92%), Gaps = 1/179 (1%)
Strand=Plus/Plus
Query 321 AAGT-GAAGCGTTCTGCCTCACGGCAAGCATGTACCCGGGGCTTAAACCTAACTCTATCT 379
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 310 AAGTAGAAGCCTTCTGTCTCACGGCAAGCATGTACCCGGGGCTTAAACCTAACTCCATCT 369
Query 380 ATTACATTGGCCATGGTCTTGGTTCATACGATCTAACCTCTGGTACGGTCCATTCCTTTT 439
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 370 ATTACATTGGCCATGGTCTTTGTTCATACGATCTAGCCTCTGGTACGGTCCATTCCTTCA 429
Query 440 ACCCTCCTCATGCACCAATGCTCAACCATGTTCCTTACTGGATCCCTTCTCATCTCTGA 498
| ||||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 430 ATCCTCCTCGGGTACCAATGCTCAACTATGTTCCTTTCTGGATCCCTTCTCATCTCTGA 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18085749186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5