BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67050.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358854 jgi|Araly1|358854|fgenesh1_pg.C_scaffold_8002641 2039 0.0
> Ahg358854 jgi|Araly1|358854|fgenesh1_pg.C_scaffold_8002641
Length=1440
Score = 2039 bits (1104), Expect = 0.0
Identities = 1331/1440 (92%), Gaps = 18/1440 (1%)
Strand=Plus/Plus
Query 39 AACAGCGACGATGACGATGAACCGAGAGGATATCTGATTCTCCGACCGGAAGAGCTCCGG 98
||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||
Sbjct 7 AACAGCGACGATGACAACGAGCCGAGAGGATATCTAATTCTCCGACCGGAAGAGCTCCGG 66
Query 99 CCATGGGAACTTGTTCGTTTGTTATTCTCCGGAGATATAGAGAAACCGAGATCAGTGGAT 158
|||||||||||| ||||||||||||||||| | ||||| || || ||||||||||| |||
Sbjct 67 CCATGGGAACTTTTTCGTTTGTTATTCTCCCGCGATATCGACAAGCCGAGATCAGTCGAT 126
Query 159 AGCTCGGAAACCGAAGAA-CACAGTTTCCGACATCGATGGCTTATCTTTGTCTCTCTCGT 217
||||| |||||| ||||| || |||||| ||| ||||||||||||||| |||||||||||
Sbjct 127 AGCTCAGAAACCAAAGAACCA-AGTTTCAGACGTCGATGGCTTATCTTCGTCTCTCTCGT 185
Query 218 CCTTCTCAAGCTTCTTCGATTCTTCTCCAAGCTTTTAGCTCTCGTTGGCTCCGCCTTAGA 277
|||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 186 CCTTCTCAAGCTACTTCGATTATTCTCCGAGCTTTTAGCTCTCCTTGGCTCCGCCTTAGA 245
Query 278 ATT-CTCTTTAAACTTCCTCTCCAATAACTCTTTCTCCGGTCTCTTCCTTCGAGGAGAAG 336
||| ||| ||||||||||||||| ||||||||| |||||| |||| || ||||||||||
Sbjct 246 ATTCCTC-TTAAACTTCCTCTCCGCTAACTCTTTATCCGGTTTCTTTCTCCGAGGAGAAG 304
Query 337 TGGTGATGCC-GCAACGGACATCGGAGAATTATCAGTCATTTATCGGACATTTAGACACG 395
| ||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 305 TAGTGGTGCCAAAAAC-AACATCAGAGAATTATCAGTCATTTATCGGACATTTAGACACG 363
Query 396 AGGGTAAGTTTAGACATGACGTTGAATCGTGAAGATGGAGAGAAATACTATGCTGCATTG 455
|| |||||||||||| |||| ||||||| ||||| ||||| ||||||||||||||||||
Sbjct 364 AGAATAAGTTTAGACAAGACGATGAATCGCGAAGACGGAGACAAATACTATGCTGCATTG 423
Query 456 TCCATTATGGCTTCAAAAATTGCCTACGAAAACGCAGCCCGTATTAAACATGTCGTCGAG 515
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 424 TCCATTATGGCTTCAAAAATTGCCTACGAAAACTCAGCCCGTATTAAAAATGTCGTCGAG 483
Query 516 AATCACTGGAATATGAAGTATTTAGGTCTCGTTGACTATTGGAACGAGTACCAAGAAAAG 575
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 AATCATTGGAATATGAAGTATTTAGGTCTCGTTGACTATTGGAACGAGTACCAAGAAAAG 543
Query 576 GAAACAACACAAGCCTTTATAATGTCTACTGACGAAACAACAACAAGATCCAACGGTCAA 635
||||||||||||||||||||||||||||| || ||||| ||||| ||||||| |||||
Sbjct 544 GAAACAACACAAGCCTTTATAATGTCTACAGATAAAACATCAACACCATCCAACTGTCAA 603
Query 636 GAAACGACGGTGGTGGTTGCATTTAGAGGCACAGAACTGTTTAATTCCGAAGATTGGTGT 695
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 604 GAAACGACGGTGGTGGTTGCATTTAGAGGAACAGAACCGTTTAATTCCGAGGATTGGTGT 663
Query 696 TCAGATTTCGACATTACATGGTTTGAGCTCCCAAACATTGGGAATATCCATGGTGGTTTC 755
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 664 TCAGATTTCGACATTACATGGTATGAGCTCCCAAACATTGGGAAGATCCATGGTGGTTTC 723
Query 756 ATGAAAGCTCTAGGGCTTCAAAACAATTGTAGTTGGCCTAAAGAACCTCTCTCAAACCCT 815
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 724 ATGAAAGCTCTCGGGCTTCAAAACAATTGTAGTTGGCCTAAGGAACCTCTCCCAAACCCT 783
Query 816 GATCGAAAATCCCCTTTAGCTTACTACTCAATAAGAGACTCTTTGAAAACTCTGATCGCT 875
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 784 GATCGATTATCCCCTTTAGCTTACTACTCAATCAGAGACTCTTTGAAAACTCTGATCGCT 843
Query 876 CAAAACAAAAACACCAAGTTTGTTCTGACCGGTCATAGCTTAGGAGGAGCCCTCGCGATA 935
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 844 CAAAACAAAAACACTAAGTTTGTTCTGACCGGTCATAGCTTAGGAGGAGCCCTTGCGATA 903
Query 936 TTGTTCACGGCTGTGCTTGTGATTCACCACGAGACCGAGTTGTTGGAGAGGATTCAAGGG 995
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 904 TTGTTCACGGCTGTGCTTGTGATTCACAACGAGACCGAGTTATTGGAGAGGATTCAAGGG 963
Query 996 GTGTATACTTATGGACAGCCTAGGGTTGGAGATTCCAAGTTTGGTGAATTTATGGAGAAG 1055
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 964 GTGTATACTTATGGACAACCTAGGGTTGGAGATTCCAAGTTTGGTGACTTTATGGAGAAG 1023
Query 1056 AAATTAGAAAAATATAATATAAAGTATTATAGATTTGTTTATAATAACGACATTGTTCCA 1115
||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 1024 AAATTAGAAGAATATGATGTCAAGTATTATAGATTTGTTTATAATAACGACATTGTTCCA 1083
Query 1116 AGATTGCCGTACGATGATAAGGATTTGATGTTCAAACACTTTGGCACTTGCATCTACTAC 1175
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 AAATTGCCGTACGATGATAAGGATTTGATGTTCAAACACTTTGGCACTTGCATCTACTAC 1143
Query 1176 GACCA-GAACTATCAAGCAAAGGTAATGAGAGAGCAATCG-----G-ACGAAAACTTTTT 1228
||||| || ||||||| ||||||| |||||||||||||| | |||||||||||||
Sbjct 1144 GACCAAGA-CTATCAACCAAAGGTTTTGAGAGAGCAATCGCAATCGGACGAAAACTTTTT 1202
Query 1229 CTT-GTTGCGAGGGATTATAAAGATGATGTGGAGTGCTATATTGGAGTTTATAAGAAGCT 1287
|| |||||| ||||||||||||||| ||| | ||| ||||||||||||||||||||||
Sbjct 1203 -TTCGTTGCGTGGGATTATAAAGATGGTGTACATTGCAATATTGGAGTTTATAAGAAGCT 1261
Query 1288 TCACTATAGTGGCTGAGAAGGGCTCGGAGTACAGTGAAGGATGGTTGTTGAAGGGTGGTA 1347
||||||| ||| |||||||||| ||||||| || ||||| |||||||||||||||||||
Sbjct 1262 TCACTATTGTGACTGAGAAGGGATCGGAGTTTAGGGAAGGTTGGTTGTTGAAGGGTGGTA 1321
Query 1348 GGGCTTTGGGGATTATAGTCCCTGGTGTTTCAAATCATACACCTCAAGATTATGTGAATG 1407
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GGGCAATGGGGATTATAGTCCCTGGTGTTTCAAATCATACACCTCAAGATTATGTGAATG 1381
Query 1408 CCACTAGATTAACCCTTCCTTGTGTTTTCCAAGT-CTATAGAGATGTATCCATAACATAA 1466
||||||||||||||| |||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1382 CCACTAGATTAACCCCTCCTTGTGTTTTCCAAATTC-ATAGAGATGTATCCATAACATAA 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5