BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67060.1 Length=1123 Score E Sequences producing significant alignments: (Bits) Value Ahg496895 jgi|Araly1|496895|fgenesh2_kg.8__2711__AT5G67060.1 1650 0.0 > Ahg496895 jgi|Araly1|496895|fgenesh2_kg.8__2711__AT5G67060.1 Length=1091 Score = 1650 bits (893), Expect = 0.0 Identities = 1043/1111 (94%), Gaps = 28/1111 (3%) Strand=Plus/Plus Query 1 ACCATTGCCATTTCTCTCACACATACCGTCTCTTTCTCTCATCATCAATCATCAATCATC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACCATTGCCATTTCTCTCACACATACCGTCTCTTTCTCTCATCATCAATCATCAATCATC 60 Query 61 CAAAAGAAAAAACCCTAAAATTTCACTTGTAAGCTTTTCACCAGTTTCTCTCCATACCCA 120 |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 CAAAAG-AAAAACCCTAAAATTTCACTTGTAAGCTTTTTACCAGTTTCTCTCCATACCC- 118 Query 121 TTTT-ATCAGCTTCTCCATATCTTTCTCTATGGATTCTGACATAATGAACATGATGATGC 179 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TTTTCATCAGCTTCTCCATATCTTTCTCTATGGATTCTGACATAATGAACATGATGATGC 178 Query 180 ATCAGATGGAGAAGCTTCCTGAGTTTTGTAACCCTAATTCCTCTTTCTTCTCTCCCGACC 239 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 179 ATCAGATGGAGAAGCTTCCTGAATTCTGTAACCCTAATTCCTCTTTCTTCTCTCCCGACC 238 Query 240 ACAACAACACTTACCCTTTTCTCTTTAACTCCACTCATTACCAGTCCGATCACTCAATGA 299 ||||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct 239 ACAACAACACTCACCCTTTTCTCTTTAACTCAACTCATTACCACTCCGATCAGGCAATGA 298 Query 300 CCAACGAACCAGGTTTCCGCTACGGTTCCGGTTTACTCACTAACCCTTCTTCTATCTCTC 359 ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || Sbjct 299 CCAACGAACCAGGTTTCCGGTACGGTTCCGGTTTACTCACTAACCATTCTTCTATCT-TC 357 Query 360 CC-AACACAGCTTACTCTTCCGTTTTTCTTGACAAAAGAAACAACAGTAACAACAACAAT 418 || |||||||| |||||||||||||| ||||||||||||||||||| || |||||||||| Sbjct 358 CCCAACACAGCCTACTCTTCCGTTTTGCTTGACAAAAGAAACAACACTAGCAACAACAAT 417 Query 419 AATGGCACGAACATGGCAGCTATGCGAGAGATGATCTTCCGTATCGCCGTGATGCAACCG 478 ||| |||||||||||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct 418 AATAGCACGAACATGGCAGCTATGCGAGAGATGATCTTTCGCATCGCCGTGATGCAGCCG 477 Query 479 ATCCATATCGATCCCGAGGCGGTTAAGCCACCGAAGAGGAGGAACGTCAGGATCTCTAAA 538 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 ATACATATAGATCCCGAGGCGGTTAAGCCACCGAAGAGGAGGAACGTCAGGATCTCTAAA 537 Query 539 GATCCTCAAAGCGTGGCGGCTAGGCATAGAAGGGAGAGAATAAGCGAGAGGATTCGGATT 598 ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 538 GATCCACAGAGCGTGGCGGCTAGGCATAGAAGGGAGAGGATAAGCGAGAGGATTCGGATT 597 Query 599 TTGCAACGGCTTGTTCCTGGTGGGACGAAGATGGATACAGCTTCGATGCTCGATGAAGCA 658 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 598 TTGCAACGGCTTGTTCCTGGTGGGACGAAGATGGATACAGCTTCGATGCTCGACGAAGCT 657 Query 659 ATTCATTATGTGAAGTTTTTAAAGAAACAGGTGCAGTCTCTGGAGGAGCAGGCGGTGGTT 718 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 658 ATTCACTATGTGAAGTTTTTAAAGAAACAGGTGCAGTCACTGGAGGAGCAGGCGGTGGTT 717 Query 719 ACTGGCggagggggaggaggaggaggaAGGGTTTTGATCGGTGGAGGTGGAATGACGGCG 778 | ||||||||| |||| ||| | ||||||||||||||||||||||||||||| Sbjct 718 AATGGCGGAGG---AGGA--AGG-G------TTTTGATCGGTGGAGGTGGAATGACGGCG 765 Query 779 GCGAGTGGTGGTGGTGGCGGCGGGGGAGTGGTTATGAAAGGGTGTGGAACAGTGGGGACT 838 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 766 GCGAGTGGTGGTGGTGGCGGCGGAGGAGTGGTTATGAAAGGGTGTGGAACAGTGGGGACT 825 Query 839 CATCAGATGGTGGGCAATGCACAGATTCTTAGATGATGATGatttttaattttattatta 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 826 CATCAGATGGTGGGCAATGCACAGATTCTTAGATGATGATGATTTTTAATTTTATTATTA 885 Query 899 ttatattaATGTTGGAGAAAAAGAGAAAAATGATTCTGGAGAGGGAAGCCAAGTAATTTA 958 ||||||||||||| ||||||| || ||||||||||||||||||||||| || ||||||| Sbjct 886 TTATATTAATGTTTGAGAAAA-GAAAAAAATGATTCTGGAGAGGGAAG--AATTAATTTA 942 Query 959 TGTGAGAGTCTTT-AA-TTTAACTTT--A-TTTTCTTGTTTAGATAATGTGTAATGATGG 1013 | ||||||||||| || ||| ||| | |||||||||||||||||||| | |||||| Sbjct 943 TATGAGAGTCTTTTAACTTTTTTTTTTTAATTTTCTTGTTTAGATAATGTATG-TGATGG 1001 Query 1014 TTTTTAAAGCCAAAGACTCTCCATGGTTGTTGGAGCGA-GTTTGTAAATTAGGAACTATT 1072 |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1002 TTTTTAAAGCCAAACACTCTCCATGGTTGTTGGAGCGACGTT-GTAAATTAGGAACTATT 1060 Query 1073 ATCATTGTATCCTTGTTAATCAAATAATTAA 1103 ||||| ||||||||||||||||||||||||| Sbjct 1061 ATCATCGTATCCTTGTTAATCAAATAATTAA 1091 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41858962866 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5