BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67060.1
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496895 jgi|Araly1|496895|fgenesh2_kg.8__2711__AT5G67060.1 1650 0.0
> Ahg496895 jgi|Araly1|496895|fgenesh2_kg.8__2711__AT5G67060.1
Length=1091
Score = 1650 bits (893), Expect = 0.0
Identities = 1043/1111 (94%), Gaps = 28/1111 (3%)
Strand=Plus/Plus
Query 1 ACCATTGCCATTTCTCTCACACATACCGTCTCTTTCTCTCATCATCAATCATCAATCATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCATTGCCATTTCTCTCACACATACCGTCTCTTTCTCTCATCATCAATCATCAATCATC 60
Query 61 CAAAAGAAAAAACCCTAAAATTTCACTTGTAAGCTTTTCACCAGTTTCTCTCCATACCCA 120
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CAAAAG-AAAAACCCTAAAATTTCACTTGTAAGCTTTTTACCAGTTTCTCTCCATACCC- 118
Query 121 TTTT-ATCAGCTTCTCCATATCTTTCTCTATGGATTCTGACATAATGAACATGATGATGC 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTTTCATCAGCTTCTCCATATCTTTCTCTATGGATTCTGACATAATGAACATGATGATGC 178
Query 180 ATCAGATGGAGAAGCTTCCTGAGTTTTGTAACCCTAATTCCTCTTTCTTCTCTCCCGACC 239
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 179 ATCAGATGGAGAAGCTTCCTGAATTCTGTAACCCTAATTCCTCTTTCTTCTCTCCCGACC 238
Query 240 ACAACAACACTTACCCTTTTCTCTTTAACTCCACTCATTACCAGTCCGATCACTCAATGA 299
||||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 239 ACAACAACACTCACCCTTTTCTCTTTAACTCAACTCATTACCACTCCGATCAGGCAATGA 298
Query 300 CCAACGAACCAGGTTTCCGCTACGGTTCCGGTTTACTCACTAACCCTTCTTCTATCTCTC 359
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 299 CCAACGAACCAGGTTTCCGGTACGGTTCCGGTTTACTCACTAACCATTCTTCTATCT-TC 357
Query 360 CC-AACACAGCTTACTCTTCCGTTTTTCTTGACAAAAGAAACAACAGTAACAACAACAAT 418
|| |||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 358 CCCAACACAGCCTACTCTTCCGTTTTGCTTGACAAAAGAAACAACACTAGCAACAACAAT 417
Query 419 AATGGCACGAACATGGCAGCTATGCGAGAGATGATCTTCCGTATCGCCGTGATGCAACCG 478
||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 418 AATAGCACGAACATGGCAGCTATGCGAGAGATGATCTTTCGCATCGCCGTGATGCAGCCG 477
Query 479 ATCCATATCGATCCCGAGGCGGTTAAGCCACCGAAGAGGAGGAACGTCAGGATCTCTAAA 538
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATACATATAGATCCCGAGGCGGTTAAGCCACCGAAGAGGAGGAACGTCAGGATCTCTAAA 537
Query 539 GATCCTCAAAGCGTGGCGGCTAGGCATAGAAGGGAGAGAATAAGCGAGAGGATTCGGATT 598
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 GATCCACAGAGCGTGGCGGCTAGGCATAGAAGGGAGAGGATAAGCGAGAGGATTCGGATT 597
Query 599 TTGCAACGGCTTGTTCCTGGTGGGACGAAGATGGATACAGCTTCGATGCTCGATGAAGCA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 TTGCAACGGCTTGTTCCTGGTGGGACGAAGATGGATACAGCTTCGATGCTCGACGAAGCT 657
Query 659 ATTCATTATGTGAAGTTTTTAAAGAAACAGGTGCAGTCTCTGGAGGAGCAGGCGGTGGTT 718
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 658 ATTCACTATGTGAAGTTTTTAAAGAAACAGGTGCAGTCACTGGAGGAGCAGGCGGTGGTT 717
Query 719 ACTGGCggagggggaggaggaggaggaAGGGTTTTGATCGGTGGAGGTGGAATGACGGCG 778
| ||||||||| |||| ||| | |||||||||||||||||||||||||||||
Sbjct 718 AATGGCGGAGG---AGGA--AGG-G------TTTTGATCGGTGGAGGTGGAATGACGGCG 765
Query 779 GCGAGTGGTGGTGGTGGCGGCGGGGGAGTGGTTATGAAAGGGTGTGGAACAGTGGGGACT 838
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 766 GCGAGTGGTGGTGGTGGCGGCGGAGGAGTGGTTATGAAAGGGTGTGGAACAGTGGGGACT 825
Query 839 CATCAGATGGTGGGCAATGCACAGATTCTTAGATGATGATGatttttaattttattatta 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 CATCAGATGGTGGGCAATGCACAGATTCTTAGATGATGATGATTTTTAATTTTATTATTA 885
Query 899 ttatattaATGTTGGAGAAAAAGAGAAAAATGATTCTGGAGAGGGAAGCCAAGTAATTTA 958
||||||||||||| ||||||| || ||||||||||||||||||||||| || |||||||
Sbjct 886 TTATATTAATGTTTGAGAAAA-GAAAAAAATGATTCTGGAGAGGGAAG--AATTAATTTA 942
Query 959 TGTGAGAGTCTTT-AA-TTTAACTTT--A-TTTTCTTGTTTAGATAATGTGTAATGATGG 1013
| ||||||||||| || ||| ||| | |||||||||||||||||||| | ||||||
Sbjct 943 TATGAGAGTCTTTTAACTTTTTTTTTTTAATTTTCTTGTTTAGATAATGTATG-TGATGG 1001
Query 1014 TTTTTAAAGCCAAAGACTCTCCATGGTTGTTGGAGCGA-GTTTGTAAATTAGGAACTATT 1072
|||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1002 TTTTTAAAGCCAAACACTCTCCATGGTTGTTGGAGCGACGTT-GTAAATTAGGAACTATT 1060
Query 1073 ATCATTGTATCCTTGTTAATCAAATAATTAA 1103
||||| |||||||||||||||||||||||||
Sbjct 1061 ATCATCGTATCCTTGTTAATCAAATAATTAA 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5