BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G67070.1

Length=827
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951519 jgi|Araly1|951519|scaffold_803406.1                        643    0.0  


> Ahg951519 jgi|Araly1|951519|scaffold_803406.1
Length=431

 Score =  643 bits (348),  Expect = 0.0
 Identities = 399/423 (94%), Gaps = 5/423 (1%)
 Strand=Plus/Plus

Query  77   ctctAGTTTCCCCCAACAATCGCCATGGCAGCTTCGtctctcaatctcctcctcattctc  136
            |||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  1    CTCTCGTTTCCTCCAACAATCTCCATGGCAGCTCCGTCTCTCAATCTCCTCCTCATTCTC  60

Query  137  tctcttctcact-ttcatttctctccagagatctgaatctctttccgataatccatctct  195
            |||||||||  | |||||||| |||| ||||||||||||||| |||||||||||||||||
Sbjct  61   TCTCTTCTC-GTCTTCATTTCACTCCCGAGATCTGAATCTCTCTCCGATAATCCATCTCT  119

Query  196  cACTCTTCTACCCGACGGATTCGACTGGCCGATCTCTCACTCCGATGAATTCGATATCAT  255
            |  |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct  120  CGTTCTTCTACCCGACGGATTCGACTGGCCGATCTCTCACTCCGACGATTTCGACATCAT  179

Query  256  CGACGGTGAAGAAAGCTTCGAAGTTACGGAGGAAGACGACGGCGTAACAGATCGACGGTC  315
            ||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||
Sbjct  180  CGACGGTGAAGAAAGCTTCGAAGTTGCGGAGGAAGACGACGGCGT---AGATCGACGGTC  236

Query  316  ATTGTACTGGCGGAGGACGAAGTATTACATATCGTACGGTGCATTGTCGGCGAATAGAGT  375
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  237  ACTGTACTGGCGGAGGACGAAGTATTACATATCGTACGGTGCATTGTCGGCGAATCGAGT  296

Query  376  GCCATGTCCTCCCAGATCTGGAAGATCGTACTACACTCATAACTGCTTCAGAGCTAGAGG  435
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCCGTGTCCTCCCAGATCTGGAAGATCGTACTACACTCATAACTGCTTCAGAGCTAGAGG  356

Query  436  TCCCGTTCATCCGTATAGCCGAGGCTGCTCGTCGATCACTCGATGCCGGAGATAGATGAA  495
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  357  TCCCGTTCATCCGTACAGCCGAGGCTGCTCGTCGATCACTCGATGCCGGAGATAGAAGAA  416

Query  496  GAA  498
            |||
Sbjct  417  GAA  419



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30574579434


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5