BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67080.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951518 jgi|Araly1|951518|scaffold_803405.1 1519 0.0
> Ahg951518 jgi|Araly1|951518|scaffold_803405.1
Length=1076
Score = 1519 bits (822), Expect = 0.0
Identities = 968/1039 (93%), Gaps = 8/1039 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTGGATTCGAGGAGAAACTATCGGATACGGAACTTTTTCTACAGTAAGTCTAGCG 60
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 22 ATGGAGTGGATTCGAGGAGAAACAATCGGATATGGAACTTTTTCTACAGTAAGTCTAGCG 81
Query 61 ACGCGGTCTAATAACGATTCCGGCGAGTTTCCTCCGTTAATGGCTGTGAAATCTGCAGAC 120
|||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 82 ACGCCGTCTAATAACGATTCCGGCGAACTTCCTCCGTTAATGGCCGTAAAATCTGCAGAC 141
Query 121 TCATACGGCGCTGCTTCTCTGGCA-AACGAGAAATCAGTTCTAGATAATCTCGGAGACGA 179
|| ||||||||| |||| |||| | ||||||||||||||||||||||| |||||||||||
Sbjct 142 TCGTACGGCGCTACTTCGCTGG-AGAACGAGAAATCAGTTCTAGATAAACTCGGAGACGA 200
Query 180 TTGCAACGAGATCGTACGGTGTTTCGGCGAGGATCGGACGGTCGAAAACGGTGAAGAGAT 239
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 201 TTGCAACGAGATCGTACGTTGTTTCGGCGAGGATCGGACGGTCGAAAACGGAGAAGAGAT 260
Query 240 GCATAATTTGTTCTTGGAATACGCTTCTAGAGGAAGCTTAGAGAGTTATCTTAAGAAATT 299
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 261 GCATAATTTGTTCTTGGAATACGCTTCGAGAGGAAGCTTAGAGAGTTATCTCAAGAAATT 320
Query 300 AGCCGGTGAAGGTGTACCGGAATCCACCGTGCGTCGCCACACAGGATCGGTGCTTAGAGG 359
|| |||||||||| ||||||||||||| || || || |||||||||||||||||| ||||
Sbjct 321 AGGCGGTGAAGGTCTACCGGAATCCACAGTACGCCGTCACACAGGATCGGTGCTTCGAGG 380
Query 360 TCTACGACACATCCACGCTAACGGATTCGCTCACTGTGATTTAAAACTCGGGAATATTCT 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 381 TCTACGACACATCCACGCTAACGGATTCGCTCACTGCGATTTAAAACTCGGGAATATTCT 440
Query 420 GTTG-TTCGGTGACGGCGCCGTTAAGATTGCGGATTTTGGATTGGCGAAGAGAATTGGGG 478
||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 441 -TTGGTTCGGTGACGGCGCCGTTAAGATTGCTGATTTTGGATTGGCGAAGAGGATTGGGG 499
Query 479 ATTTAACGGCGTTAAATTACGGTGTGCAGATTAGAGGTACGCCGTTGTACATGGCGCCGG 538
| |||||||| ||||| | || || ||||||||||||||||||||||| ||||||||||
Sbjct 500 AAGTAACGGCGATAAATGAAGGAGTTCAGATTAGAGGTACGCCGTTGTATATGGCGCCGG 559
Query 539 AATCTGTTAACGATAACGAGTACGGATCAGAAGGTGACGTGTGGGCTTTAGGATGCG-TA 597
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 560 AGTCTGTAAACGATAACGAGTACGGATCAGAGGGTGACGTGTGGGCTTTAGGATGTGCT- 618
Query 598 GTAGTTGAGATGTTTAGTGGTAAAACGGCATGGAGTTTAAAAGAAGGGTCGAACTTCATG 657
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 619 GTAGTTGAAATGTTTAGTGGCAAAACGGCATGGAGTTTAAAAGAAGGATCGAACTTCATG 678
Query 658 TCGTTGTTGTTACGCATCGGTGTTGGTGACGAGGTTCCGATGATTCCCGAGGAGTTGTCG 717
||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 679 TCGTTGTTGATACGCATCGGTGTTGGTGATGAGCTTCCGATGATTCCCGAGGAGTTGTCG 738
Query 718 GAACAAGGAAGAGATTTTTTGTCAAAGTGTTTCGTTAAAGATCCCAAAAAGAGATGGACG 777
|||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 739 GAACAAGGAAAAGATTTTTTGACAAAGTGTTTCGTTAAAGATCCTAAAAAGAGATGGACG 798
Query 778 GCTGAGATGCTTCTAAACCATCCATTTGTAACCGTCGATGTTGATCACGACGTTTTAGTC 837
||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 799 GCTGAGATGCTTCTACACCATCCATTTGTAGCCGTCGATGTTGATTACGACGGTTTAGT- 857
Query 838 A-AAGAAGAAGATTTCGTTGTTAATATGAAAACAGAGGACGTCTCGACATCGCCGAGATG 896
| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 858 AGAAGAAGAAGACTTCGTTGTTAAGCTGAAAACAGAGGAAGTCTCGACATCGCCGAGATG 917
Query 897 CCCATTCGAATTTCCCGATTGGGTTTCGGTTTCTTCCGGTTCACAAACGATCGATTCGCC 956
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct 918 TCCATTCGAATTTCCCGATTGGGTTTCGGTTTCTTCCAGTTCACGAACGATCGATTCACC 977
Query 957 GGATGAGAGAGTTGCTAGTTTGGTGACTGATATGATCCCTGATTGGTCTGTTACCAATAG 1016
|| ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 978 AGAGGAGAGAGTTACGAGTTTGGTGACTGATATGATCCCTGATTGGTCTGTCACCAATAG 1037
Query 1017 CTGGGTCACCGTACGGTGA 1035
|||||||||||||||||||
Sbjct 1038 CTGGGTCACCGTACGGTGA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5