BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67090.1 Length=2374 Score E Sequences producing significant alignments: (Bits) Value Ahg496892 jgi|Araly1|496892|fgenesh2_kg.8__2708__AT5G67090.1 3483 0.0 > Ahg496892 jgi|Araly1|496892|fgenesh2_kg.8__2708__AT5G67090.1 Length=2371 Score = 3483 bits (1886), Expect = 0.0 Identities = 2213/2375 (93%), Gaps = 6/2375 (0%) Strand=Plus/Plus Query 2 TAATTGTTTCTTACTAACACCAAAATTCATTTCACTTTGAAGAGACCAGAGaaaaaaaCT 61 ||||| |||||||||||| ||||| ||||||||| |||||| ||||||||| ||||||| Sbjct 1 TAATTTTTTCTTACTAACTCCAAATTTCATTTCAGTTTGAAAAGACCAGAG-GAAAAACT 59 Query 62 TGCTCAGACATGGGGATGACCGTCGTAATTATTCTGGTGTTCTCATTTTTCGTAGCGATT 121 | |||||||||| |||||||||||| ||| ||||| || |||| |||| |||||||||| Sbjct 60 TACTCAGACATGCTGATGACCGTCGTGATTCTTCTGATGATCTCCTTTTACGTAGCGATT 119 Query 122 GTAACGGCGGAGACCTCTCCTTACATCATCCACATGGACTTATCCGCTAAACCGTTGCCA 181 | || ||||||||||||| ||||||||||||||||||||||||| || |||||||||||| Sbjct 120 GCAAAGGCGGAGACCTCTACTTACATCATCCACATGGACTTATCAGCCAAACCGTTGCCA 179 Query 182 TTTTCCGATCATCGGAGCTGGTTTTCCACAACTCTTACTTCAGTTATAACCAATAGAAAA 241 |||||| ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| Sbjct 180 TTTTCCAATCATCGGAACTGGTTTTCCACAACTCTTACTTCGGTTATAACCGATAGAAAA 239 Query 242 CCAAAGATTATCTACGCTTATACCGATTCGGTTCACGGGTTTAGCGCGGTTCTCACCAAC 301 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| Sbjct 240 CCAAAGATTATCTACGCTTATACTGATTCGGTTCACGGGTTTAGCGCAGTTCTCA-CAAC 298 Query 302 TCT-GAGCTCCAACGTCTTAAACACAAACCCGGGTATGTCTCGTTCACCAAAGATTTACC 360 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 299 CCTCGAGCTCCAACGTCTTAAACACAAACCCGGGTATGTCTCTTTCACCAAAGATTTACC 358 Query 361 GGTTAAGCTTCATACCACTTTCTCTCCAAAGTTTATCGGTTTAAATTCGACATCCGGTAC 420 ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| Sbjct 359 GGTTAAGCTTCATACCACTTTCTCTCCGCAGTTTATTGGTCTAAATTCGACATCCGGTAC 418 Query 421 ATGGCCGGTCTCGAATTATGGAGCTGGTATAGTAATCGGTATTATAGATACCGGAATTTG 480 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 419 ATGGCCGGTCTCGAATTATGGAGATGGTACAGTAATCGGTATTATAGATACCGGAATTTG 478 Query 481 GCCCGATAGTCCCAGCTTTCACGACGATGGGGTTGGTTCGGTTCCGTCTAAATGGAAAGG 540 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 479 GCCCGATAGTCCCAGCTTTCACGACGATGGGGTTGGTACGGTTCCGTCTAAATGGAAAGG 538 Query 541 AGCATGTGAATTCAATTCTTCTTCCTTGTGCAACAAGAAACTAATCGGTGCTAAGGTATT 600 |||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| Sbjct 539 AGCATGTGAATTCAATTCCTCTTCCTTGTGCAACAAGAAACTAATTGGTGCTAGGGTATT 598 Query 601 CAACAAGGGTTTGTTCGCCAACAACCCTGATTTGAGAGAAACCAAGATTGGCCAATACTC 660 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 599 CAACAAGGGTTTGTTTGCCAACAACCCTGATTTGAGAGAAACCAAGATTGGTCAATACTC 658 Query 661 TTCACCGTACGATACAATCGGACACGGCACTCATGTTGCAGCCATTGCAGCTGGGAATCA 720 |||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| Sbjct 659 TTCACCGTACGATACAATTGGACATGGCACTCATGTTGCGGCCATTGCAGCTGGTAATCA 718 Query 721 TGTTAAGAACGCGTCTTACTTCTCTTACGCCCAAGGAACCGCCTCAGGAATCGCACCACA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 719 CGTTAAGAACGCGTCTTACTTCTCTTACGCCCAAGGAACCGCCTCAGGAATCGCACCGCA 778 Query 781 CGCGCATCTAGCAATCTACAAAGCCGCGTGGGAAGAAGGGATTTACTCATCAGATGTAAT 840 |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 779 CGCGCATCTAGCGATCTACAAAGCCGCTTGGGAAGAAGGGATCTACTCATCAGATGTAAT 838 Query 841 CGCAGCGATTGATCAAGCGATTCGAGATGGAGTCCATGTGATATCTCTGTCGCTAGGATT 900 |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| Sbjct 839 CGCAGCGATTGATCAAGCCATTCGAGATGGAGTTGATGTGATATCTCTGTCACTAGGATT 898 Query 901 GAGTTTTGAGGATGATGACGACAATGATGGTTTCGGTCTAGAAAATGATCCAATCGCAGT 960 ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 899 GAGCTTTGAGGATGGTGACGACAGCGATGGTTTCGGTCTAGAAAATGATCCAATCGCAGT 958 Query 961 CGCATCTTTTGCAGCGATTCAAAAAGGCGTTTTCGTGGTTACTTCCGGCGGTAACGACGG 1020 ||| | |||||||||||||||||||||||||| || ||| |||| || ||||| ||||| Sbjct 959 GGCAGCGTTTGCAGCGATTCAAAAAGGCGTTTTTGTAGTTGCTTCAGGTGGTAATGACGG 1018 Query 1021 GCCATATTACTGGAGTTTGATTAACGGAGCGCCGTGGATTATGACGGTTGGAGCGGGAAC 1080 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 GCCGTATTATTGGAGTTTAATTAACGGAGCGCCGTGGATTATGACGGTTGGAGCGGGAAC 1078 Query 1081 AATTGGTAGGCAATTTCAAGGAACCCTAACGTTTGGAAACAGAGTTAGTTTCAGTTTTCC 1140 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 1079 AATTGGTCGGCAATTTCAAGGAACCCTAACGTTTGGACACAGAGTTAGTTTCAATTTTCC 1138 Query 1141 ATCTCTGTTTCCTGGAGAGTTCCCTTCGGTTCAGTTTCCAGTAACTTACATCGAATCTGG 1200 |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1139 ATCTCTGTTTCCCGGAGATTTTCCTTCGGTTCAGTTTCCAGTAACTTACATCGAATCTGG 1198 Query 1201 CAGCGTTGAAAACAAGACTCTCGCAAACAGAATTGTTGTCTGTAACGAAAACATAAACAT 1260 |||||| |||||||||||| |||| |||||||||||||||||||| |||||| ||||||| Sbjct 1199 CAGCGTCGAAAACAAGACTTTCGCGAACAGAATTGTTGTCTGTAATGAAAACGTAAACAT 1258 Query 1261 CGGTAGCAAACTTCATCAAATCAGATCCACCGGAGCTGCAGCAGTAGTTTTAATAACAGA 1320 ||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 1259 CGGAAGTAAACTTCATCAAATCAAATCCACCGGAGCTGCAGCAGTTGTTTTAATAACAGA 1318 Query 1321 TAAGTTACTTGAGGAGCAAGACACAATAAAATTCCAGTTTCCAGTAGCATTCATCGGCTC 1380 ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||| Sbjct 1319 TAAGTTACTTGAGGAACAAGACACTATAAAATTCCAGTTTCCGGTAGCATTCATCAGCTC 1378 Query 1381 AAAACACCGAGAAACTATTGAAAGCTACGCATCAAGCAACAAAAACAACGCGACCGCAAA 1440 || ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1379 AAGACACCGAGAAACTATTGAAAGCTACGCATCAAGCAACGAAAACAACGCGACGGCAAA 1438 Query 1441 GCTGGAGTTTCGTAAAACGGTAATCGGGACAAAACCAGCGCCAGAAGTTGGCACATACAG 1500 |||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||| Sbjct 1439 GCTGGAGTTTCGGAAAACAGTAATCGGGACAAAACCAGCACCAGAAGTAGGCACATACAG 1498 Query 1501 CTCAAGGGGTCCATTCACAAGCTTCCCTCAAATCCTGAAACCAGACATTCTAGCTCCTGG 1560 ||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1499 CTCGAGAGGTCCATTCACAAGCTTCCCTCAAATCCTCAAACCGGACATTCTAGCTCCTGG 1558 Query 1561 GACACTTATACTCTCTGCTTGGCCGTCGGTTGAGCAAATCACCGGAACTCGAGCACTACC 1620 ||||| |||||||| |||||||| ||||| | | | || | ||||||| || || ||| Sbjct 1559 CACACTGATACTCTCCGCTTGGCCACCGGTTAAACCAGTCTCAGGAACTCAAGAACAACC 1618 Query 1621 GTTATTCAGCGGATTCAATCTCTTAACCGGGACATCAATGGCTGCACCTCATGTAGCTGG 1680 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1619 GTTATTCAGCGGATTCAATCTCTTAACCGGGACATCAATGGCTGCACCTCACGTGGCTGG 1678 Query 1681 AGTCGCTGCGCTTATAAAGCAAGTCCATCCAAATTGGAGTCCATCGGCTATAAAATCTGC 1740 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1679 AGTCGCCGCGCTTATAAAGCAAGTCCATCCAAATTGGAGCCCATCGGCTATAAAATCTGC 1738 Query 1741 AATTATGACAACGGCTTTGACTTTAGACAACCCATTAGCCGTTGGAGCAGGGCATGTGAG 1800 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1739 AATTATGACAACGGCTTTGACTTTAGACAACCCTTTAGCCGTTGGAGCAGGACATGTGAG 1798 Query 1801 TACGAACAAAGTCTTAAACCCTGGCCTAATCTATGATACAACTCCACAAGATTTCATAAA 1860 |||||||| |||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct 1799 TACGAACAGAGTCTTGAATCCTGGCCTAATCTATGATACAACTCCTCAAGATTTCATAAA 1858 Query 1861 CTTCCTTTGTCACGAGGCAAAACAATCAAGAAAATTGATCAATATCATCACGAGATCGAA 1920 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1859 CTTCCTTTGTCACGAGGCAAAACAATCAAGAAAATTGATCAATATCATCACAAGATCGAA 1918 Query 1921 TATCTCCGACGCTTGTAAAAAGCCATCTCCATATCTCAATTACCCTTCAATCATTGCCTA 1980 ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1919 TATTTCCGACGCTTGTAAAAACCCATCTCCATACCTCAATTACCCTTCAATCATTGCCTA 1978 Query 1981 CTTCACGTCTGATCAAAGCAGTCCCAAGATCTTTAAGAGGACATTGACAAACGTGGGAGA 2040 ||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||||| Sbjct 1979 CTTCACGTCCGATCAAAACGGTCCCAAGATCTTTCAGAGGACATTGACAAACGTGGGAGA 2038 Query 2041 AGCAAAGAGAAGCTACATCGTGAGAGTGAGAGGCTTGAAGGGTCTAAACGTCGTCGTAGA 2100 |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 2039 AGCAAACAGAAGCTACAGCGTGAGAGAGAGAGGCTTGAAGGGTCTAAACGTCGTCGTAGA 2098 Query 2101 GCCAAAGAAACTAATGTTCAGCGAGAAAAACGAGAAGCTAAGCTACACTGTGAGATTGGA 2160 ||||||| |||| |||||||||||||||||||||||||||| |||||||| ||||| || Sbjct 2099 ACCAAAGAGACTAGTGTTCAGCGAGAAAAACGAGAAGCTAAGTTACACTGTAAGATTAGA 2158 Query 2161 GAGTCCAAGAGGGTTACAAGAGAACGTGGTTTATGGATTGGTGAGTTGGGTTGATGAAGA 2220 |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2159 GAGTCCGAGAGCGTTACAAGAGAACGTGGTTTATGGATTGGTGAGTTGGATTGATGAAGA 2218 Query 2221 TGAAGCTGAGTTTGAAGTGAGCTGTTCTGTGGTGGCCACGAGCCTTGTCCAAGAGTCTTG 2280 ||||||| | |||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 2219 TGAAGCTAACTTTGAAATTAGTTGTTCTGTGGTGGCCACGAGCCTTGTCCAAGAGTCTTA 2278 Query 2281 ATCTTTACTTTGCAAAAGATTTGttttttttCTTCTTTGGTTAA-ACTTATTCTCTTATT 2339 ||||||||||| |||||||||| |||||||| |||||||||||| | ||||||||| ||| Sbjct 2279 ATCTTTACTTTACAAAAGATTTTTTTTTTTTGTTCTTTGGTTAAGA-TTATTCTCT-ATT 2336 Query 2340 CCGTGTGATTATGTCTGAATATACGATCTTTATTC 2374 |||||||||||||| ||||||| |||||||||| Sbjct 2337 TTGTGTGATTATGTCTAAATATACAATCTTTATTC 2371 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89435895260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5