BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67090.1
Length=2374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496892 jgi|Araly1|496892|fgenesh2_kg.8__2708__AT5G67090.1 3483 0.0
> Ahg496892 jgi|Araly1|496892|fgenesh2_kg.8__2708__AT5G67090.1
Length=2371
Score = 3483 bits (1886), Expect = 0.0
Identities = 2213/2375 (93%), Gaps = 6/2375 (0%)
Strand=Plus/Plus
Query 2 TAATTGTTTCTTACTAACACCAAAATTCATTTCACTTTGAAGAGACCAGAGaaaaaaaCT 61
||||| |||||||||||| ||||| ||||||||| |||||| ||||||||| |||||||
Sbjct 1 TAATTTTTTCTTACTAACTCCAAATTTCATTTCAGTTTGAAAAGACCAGAG-GAAAAACT 59
Query 62 TGCTCAGACATGGGGATGACCGTCGTAATTATTCTGGTGTTCTCATTTTTCGTAGCGATT 121
| |||||||||| |||||||||||| ||| ||||| || |||| |||| ||||||||||
Sbjct 60 TACTCAGACATGCTGATGACCGTCGTGATTCTTCTGATGATCTCCTTTTACGTAGCGATT 119
Query 122 GTAACGGCGGAGACCTCTCCTTACATCATCCACATGGACTTATCCGCTAAACCGTTGCCA 181
| || ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct 120 GCAAAGGCGGAGACCTCTACTTACATCATCCACATGGACTTATCAGCCAAACCGTTGCCA 179
Query 182 TTTTCCGATCATCGGAGCTGGTTTTCCACAACTCTTACTTCAGTTATAACCAATAGAAAA 241
|||||| ||||||||| |||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 180 TTTTCCAATCATCGGAACTGGTTTTCCACAACTCTTACTTCGGTTATAACCGATAGAAAA 239
Query 242 CCAAAGATTATCTACGCTTATACCGATTCGGTTCACGGGTTTAGCGCGGTTCTCACCAAC 301
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 240 CCAAAGATTATCTACGCTTATACTGATTCGGTTCACGGGTTTAGCGCAGTTCTCA-CAAC 298
Query 302 TCT-GAGCTCCAACGTCTTAAACACAAACCCGGGTATGTCTCGTTCACCAAAGATTTACC 360
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 CCTCGAGCTCCAACGTCTTAAACACAAACCCGGGTATGTCTCTTTCACCAAAGATTTACC 358
Query 361 GGTTAAGCTTCATACCACTTTCTCTCCAAAGTTTATCGGTTTAAATTCGACATCCGGTAC 420
||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct 359 GGTTAAGCTTCATACCACTTTCTCTCCGCAGTTTATTGGTCTAAATTCGACATCCGGTAC 418
Query 421 ATGGCCGGTCTCGAATTATGGAGCTGGTATAGTAATCGGTATTATAGATACCGGAATTTG 480
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 419 ATGGCCGGTCTCGAATTATGGAGATGGTACAGTAATCGGTATTATAGATACCGGAATTTG 478
Query 481 GCCCGATAGTCCCAGCTTTCACGACGATGGGGTTGGTTCGGTTCCGTCTAAATGGAAAGG 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 GCCCGATAGTCCCAGCTTTCACGACGATGGGGTTGGTACGGTTCCGTCTAAATGGAAAGG 538
Query 541 AGCATGTGAATTCAATTCTTCTTCCTTGTGCAACAAGAAACTAATCGGTGCTAAGGTATT 600
|||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct 539 AGCATGTGAATTCAATTCCTCTTCCTTGTGCAACAAGAAACTAATTGGTGCTAGGGTATT 598
Query 601 CAACAAGGGTTTGTTCGCCAACAACCCTGATTTGAGAGAAACCAAGATTGGCCAATACTC 660
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 CAACAAGGGTTTGTTTGCCAACAACCCTGATTTGAGAGAAACCAAGATTGGTCAATACTC 658
Query 661 TTCACCGTACGATACAATCGGACACGGCACTCATGTTGCAGCCATTGCAGCTGGGAATCA 720
|||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||
Sbjct 659 TTCACCGTACGATACAATTGGACATGGCACTCATGTTGCGGCCATTGCAGCTGGTAATCA 718
Query 721 TGTTAAGAACGCGTCTTACTTCTCTTACGCCCAAGGAACCGCCTCAGGAATCGCACCACA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 CGTTAAGAACGCGTCTTACTTCTCTTACGCCCAAGGAACCGCCTCAGGAATCGCACCGCA 778
Query 781 CGCGCATCTAGCAATCTACAAAGCCGCGTGGGAAGAAGGGATTTACTCATCAGATGTAAT 840
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 779 CGCGCATCTAGCGATCTACAAAGCCGCTTGGGAAGAAGGGATCTACTCATCAGATGTAAT 838
Query 841 CGCAGCGATTGATCAAGCGATTCGAGATGGAGTCCATGTGATATCTCTGTCGCTAGGATT 900
|||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||
Sbjct 839 CGCAGCGATTGATCAAGCCATTCGAGATGGAGTTGATGTGATATCTCTGTCACTAGGATT 898
Query 901 GAGTTTTGAGGATGATGACGACAATGATGGTTTCGGTCTAGAAAATGATCCAATCGCAGT 960
||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 899 GAGCTTTGAGGATGGTGACGACAGCGATGGTTTCGGTCTAGAAAATGATCCAATCGCAGT 958
Query 961 CGCATCTTTTGCAGCGATTCAAAAAGGCGTTTTCGTGGTTACTTCCGGCGGTAACGACGG 1020
||| | |||||||||||||||||||||||||| || ||| |||| || ||||| |||||
Sbjct 959 GGCAGCGTTTGCAGCGATTCAAAAAGGCGTTTTTGTAGTTGCTTCAGGTGGTAATGACGG 1018
Query 1021 GCCATATTACTGGAGTTTGATTAACGGAGCGCCGTGGATTATGACGGTTGGAGCGGGAAC 1080
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GCCGTATTATTGGAGTTTAATTAACGGAGCGCCGTGGATTATGACGGTTGGAGCGGGAAC 1078
Query 1081 AATTGGTAGGCAATTTCAAGGAACCCTAACGTTTGGAAACAGAGTTAGTTTCAGTTTTCC 1140
||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1079 AATTGGTCGGCAATTTCAAGGAACCCTAACGTTTGGACACAGAGTTAGTTTCAATTTTCC 1138
Query 1141 ATCTCTGTTTCCTGGAGAGTTCCCTTCGGTTCAGTTTCCAGTAACTTACATCGAATCTGG 1200
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ATCTCTGTTTCCCGGAGATTTTCCTTCGGTTCAGTTTCCAGTAACTTACATCGAATCTGG 1198
Query 1201 CAGCGTTGAAAACAAGACTCTCGCAAACAGAATTGTTGTCTGTAACGAAAACATAAACAT 1260
|||||| |||||||||||| |||| |||||||||||||||||||| |||||| |||||||
Sbjct 1199 CAGCGTCGAAAACAAGACTTTCGCGAACAGAATTGTTGTCTGTAATGAAAACGTAAACAT 1258
Query 1261 CGGTAGCAAACTTCATCAAATCAGATCCACCGGAGCTGCAGCAGTAGTTTTAATAACAGA 1320
||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1259 CGGAAGTAAACTTCATCAAATCAAATCCACCGGAGCTGCAGCAGTTGTTTTAATAACAGA 1318
Query 1321 TAAGTTACTTGAGGAGCAAGACACAATAAAATTCCAGTTTCCAGTAGCATTCATCGGCTC 1380
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 1319 TAAGTTACTTGAGGAACAAGACACTATAAAATTCCAGTTTCCGGTAGCATTCATCAGCTC 1378
Query 1381 AAAACACCGAGAAACTATTGAAAGCTACGCATCAAGCAACAAAAACAACGCGACCGCAAA 1440
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1379 AAGACACCGAGAAACTATTGAAAGCTACGCATCAAGCAACGAAAACAACGCGACGGCAAA 1438
Query 1441 GCTGGAGTTTCGTAAAACGGTAATCGGGACAAAACCAGCGCCAGAAGTTGGCACATACAG 1500
|||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1439 GCTGGAGTTTCGGAAAACAGTAATCGGGACAAAACCAGCACCAGAAGTAGGCACATACAG 1498
Query 1501 CTCAAGGGGTCCATTCACAAGCTTCCCTCAAATCCTGAAACCAGACATTCTAGCTCCTGG 1560
||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1499 CTCGAGAGGTCCATTCACAAGCTTCCCTCAAATCCTCAAACCGGACATTCTAGCTCCTGG 1558
Query 1561 GACACTTATACTCTCTGCTTGGCCGTCGGTTGAGCAAATCACCGGAACTCGAGCACTACC 1620
||||| |||||||| |||||||| ||||| | | | || | ||||||| || || |||
Sbjct 1559 CACACTGATACTCTCCGCTTGGCCACCGGTTAAACCAGTCTCAGGAACTCAAGAACAACC 1618
Query 1621 GTTATTCAGCGGATTCAATCTCTTAACCGGGACATCAATGGCTGCACCTCATGTAGCTGG 1680
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1619 GTTATTCAGCGGATTCAATCTCTTAACCGGGACATCAATGGCTGCACCTCACGTGGCTGG 1678
Query 1681 AGTCGCTGCGCTTATAAAGCAAGTCCATCCAAATTGGAGTCCATCGGCTATAAAATCTGC 1740
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1679 AGTCGCCGCGCTTATAAAGCAAGTCCATCCAAATTGGAGCCCATCGGCTATAAAATCTGC 1738
Query 1741 AATTATGACAACGGCTTTGACTTTAGACAACCCATTAGCCGTTGGAGCAGGGCATGTGAG 1800
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1739 AATTATGACAACGGCTTTGACTTTAGACAACCCTTTAGCCGTTGGAGCAGGACATGTGAG 1798
Query 1801 TACGAACAAAGTCTTAAACCCTGGCCTAATCTATGATACAACTCCACAAGATTTCATAAA 1860
|||||||| |||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1799 TACGAACAGAGTCTTGAATCCTGGCCTAATCTATGATACAACTCCTCAAGATTTCATAAA 1858
Query 1861 CTTCCTTTGTCACGAGGCAAAACAATCAAGAAAATTGATCAATATCATCACGAGATCGAA 1920
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1859 CTTCCTTTGTCACGAGGCAAAACAATCAAGAAAATTGATCAATATCATCACAAGATCGAA 1918
Query 1921 TATCTCCGACGCTTGTAAAAAGCCATCTCCATATCTCAATTACCCTTCAATCATTGCCTA 1980
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1919 TATTTCCGACGCTTGTAAAAACCCATCTCCATACCTCAATTACCCTTCAATCATTGCCTA 1978
Query 1981 CTTCACGTCTGATCAAAGCAGTCCCAAGATCTTTAAGAGGACATTGACAAACGTGGGAGA 2040
||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 1979 CTTCACGTCCGATCAAAACGGTCCCAAGATCTTTCAGAGGACATTGACAAACGTGGGAGA 2038
Query 2041 AGCAAAGAGAAGCTACATCGTGAGAGTGAGAGGCTTGAAGGGTCTAAACGTCGTCGTAGA 2100
|||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2039 AGCAAACAGAAGCTACAGCGTGAGAGAGAGAGGCTTGAAGGGTCTAAACGTCGTCGTAGA 2098
Query 2101 GCCAAAGAAACTAATGTTCAGCGAGAAAAACGAGAAGCTAAGCTACACTGTGAGATTGGA 2160
||||||| |||| |||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 2099 ACCAAAGAGACTAGTGTTCAGCGAGAAAAACGAGAAGCTAAGTTACACTGTAAGATTAGA 2158
Query 2161 GAGTCCAAGAGGGTTACAAGAGAACGTGGTTTATGGATTGGTGAGTTGGGTTGATGAAGA 2220
|||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2159 GAGTCCGAGAGCGTTACAAGAGAACGTGGTTTATGGATTGGTGAGTTGGATTGATGAAGA 2218
Query 2221 TGAAGCTGAGTTTGAAGTGAGCTGTTCTGTGGTGGCCACGAGCCTTGTCCAAGAGTCTTG 2280
||||||| | |||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 2219 TGAAGCTAACTTTGAAATTAGTTGTTCTGTGGTGGCCACGAGCCTTGTCCAAGAGTCTTA 2278
Query 2281 ATCTTTACTTTGCAAAAGATTTGttttttttCTTCTTTGGTTAA-ACTTATTCTCTTATT 2339
||||||||||| |||||||||| |||||||| |||||||||||| | ||||||||| |||
Sbjct 2279 ATCTTTACTTTACAAAAGATTTTTTTTTTTTGTTCTTTGGTTAAGA-TTATTCTCT-ATT 2336
Query 2340 CCGTGTGATTATGTCTGAATATACGATCTTTATTC 2374
|||||||||||||| ||||||| ||||||||||
Sbjct 2337 TTGTGTGATTATGTCTAAATATACAATCTTTATTC 2371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89435895260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5