BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67110.1
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496889 jgi|Araly1|496889|fgenesh2_kg.8__2705__AT5G67110.1 1197 0.0
> Ahg496889 jgi|Araly1|496889|fgenesh2_kg.8__2705__AT5G67110.1
Length=872
Score = 1197 bits (648), Expect = 0.0
Identities = 828/908 (91%), Gaps = 40/908 (4%)
Strand=Plus/Plus
Query 1 AATTTTTACACACAGAGTAGAGCagagagagagagagagagag--agaTGGGTGATTCTG 58
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 AATTTTTACACACAGAGTAGAG-AGAGAGAGAGAGAGAGAGAGATAGATGGGTGATTCTG 59
Query 59 ACGTCGGTGATCGTCTTCCCCCTCCATCTTCTTCCGACGAACTCTCGAGCTTTCTCCGAC 118
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 60 ACGTCGGTGATCGTCTTCCTCCTCCATCTTCTTCCGACGAACTCTCGAGCTTTCTCCGGC 119
Query 119 AGATTCTTTCCCGTACTCCTACAGCTCAACCTTCTTCACCACCGAAGAGTACTAATGTTT 178
| |||||||| |||||||| |||||||| ||||| |||||||||||||| | |||||||
Sbjct 120 AAATTCTTTCTCGTACTCCGACAGCTCACCCTTCGTCACCACCGAAGAG-A--AATGTTT 176
Query 179 CCTCCGCTGAGACCTTCTTCCCTTCCGTTTCCGGCGGAGCTGTTTCT-TCCGTCGGTTAT 237
|||||||||||||||||||||||||||||||||| ||||| |||||| | || |||||||
Sbjct 177 CCTCCGCTGAGACCTTCTTCCCTTCCGTTTCCGGTGGAGCGGTTTCTAT-CGCCGGTTAT 235
Query 238 GGAGTCTCTGAAACTGGCCAAGACAAATATGCTTTCGAACACAAGAGAAGTGGAGCTAAA 297
|||| || | | |||||| ||||||||||||||| | ||||||| ||||||||||
Sbjct 236 GGAG--TC-G---C---CCAAGAAAAATATGCTTTCGAAAATAAGAGAAATGGAGCTAAA 286
Query 298 CAGAGAAATTCGTTGAAGAGAAACATTGATGCTCAATTCCACAACTTGTCTGAAAAGAAG 357
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 287 CAGAGGAATTCGTTGAAGAGAACCATTGATGCTCAATTCCACAACTTGTCTGAAAAGAGG 346
Query 358 AGGAGGAGCAAGATCAACGAGAAAATGAAAGCTTTGCAGAAACTCATTCCCAATTCCAAC 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 347 AGGAGGAGCAAGATCAACGAGAAAATGAAAGCTTTGCAGAAACTCATACCCAATTCCAAC 406
Query 418 AAGACTGATAAAGCCTCAATGCTTGATGAAGCTATAGAATATCTGAAGCAGCTTCAACTT 477
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 407 AAGACTGATAAAGCTTCAATGCTTGATGAGGCTATTGAATATCTGAAGCAGCTTCAACTT 466
Query 478 CAAGTCCAGACTTTAGCCGTTATGAATGGTTTAGGCTTAAACCCTATGCGATTACCACAG 537
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 467 CAAGTTCAGACTTTAGCCGTTATGAATGGTTTAGGCCTAAACCCTATGCGATTACCACCG 526
Query 538 GTTCCACCTCCAACTCATACAAGGATCAATGAGACCTTAGAGCAAGACCTGAACCTAGAG 597
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GTTCTACCTCCAACTCATACAAGGATCAATGAGACCTTAGAGCAAGACCTGAACCTAGAG 586
Query 598 ACTCTTCTCGCTGCTCCTCACTCGCTGGAACCAGCTAAAACAAGTCAAGGAATGTGCTTT 657
|||||||| |||||||||||||||||||||||| || || ||| ||||| ||||||||||
Sbjct 587 ACTCTTCTTGCTGCTCCTCACTCGCTGGAACCACCTCAAGCAACTCAAGAAATGTGCTTT 646
Query 658 TCCACAGCCACTCTGCTTTGAAGATAACATTCAGACAATGATGATGATCGGAATTCCTCT 717
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 647 TCCACAGCTACTCTGCTTTGAAGATAACATTCAGACAATGATGATGATCAGAATTCCTCT 706
Query 718 AGTACCTGCCAGACAGGAGTGAACAATGTTTTGAGTTTTAGCATTGGCCAGATTTCTA-T 776
||||||||||||||| ||| ||||| ||| | |||||||||||| || |
Sbjct 707 AGTACCTGCCAGACA----TGA-----GTTTT-AGT---A---TTGGCCAGATTT-TAAT 749
Query 777 GTTCAGTTATAGTTATGCTAATAAGCTTTAGGAGTGAACAAAATCTGAGTAGTTTGATTA 836
|||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 750 GTTCAGTTATAGTTATGCTATTCAGCTTTAGGAGTGAACAAAAA-TGAGTAGTTTGATTA 808
Query 837 TAATGATGTCTGAAGCAGATTATATATAAAAGACTAATTTACTTACATATGAGATGATTA 896
|||||||||||||| |||||||||| ||| ||| |||||| |||||| ||||||||||
Sbjct 809 AAATGATGTCTGAAGAAGATTATATA-AAA-GACCAATTTAGTTACAT--GAGATGATTA 864
Query 897 TTACAACT 904
||||||||
Sbjct 865 TTACAACT 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33510044043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5