BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67120.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332860 jgi|Araly1|332860|fgenesh1_pm.C_scaffold_8002203 839 0.0
> Ahg332860 jgi|Araly1|332860|fgenesh1_pm.C_scaffold_8002203
Length=813
Score = 839 bits (454), Expect = 0.0
Identities = 692/805 (86%), Gaps = 23/805 (3%)
Strand=Plus/Plus
Query 28 ATACCGGATAGTCCTTTTAGCTTCATGTGGCTACTATTTGGAGACGACTGGGATCTATGG 87
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 19 ATACCGGATAGTCCTTTTAGCTTCATCTGGCTACTATTTGGAGACGACTGGCATCTATGG 78
Query 88 GACACTTACTCACCAGTTGATGCTGATGACATCTCACCAGATCCAAC-GCTTGATGTGAA 146
||||||||| || ||||||| ||||||| |||||| ||||||||||| | ||||||||||
Sbjct 79 GACACTTACCCAACAGTTGACGCTGATGCCATCTCTCCAGATCCAACTG-TTGATGTGAA 137
Query 147 CGGTGATGGTCCGGCAATAGAGCCCGGTTCCCTTCTGAGGACAATTAGTTGGG-A-AACA 204
| ||||| ||||| | |||||| ||||||| ||| | |||||| ||||||||| | || |
Sbjct 138 CCGTGATAGTCCGACGATAGAGTCCGGTTCACTTATAAGGACAGTTAGTTGGGAAGAAGA 197
Query 205 -ACGTTCGAGCAGGAC-TCGTTACAATCATGGAACGATGAACAATCTGAAACAACATCAG 262
||||||||||| || || ||||| |||| || | ||||||||||||||||| |||||
Sbjct 198 TTCGTTCGAGCAGCACTTC-TTACAGTCATCGATCAATGAACAATCTGAAACAGCATCAC 256
Query 263 TAGTAGAGTATAC-AGATGTATCTTCTCATGGAA-ACACCTTCACTA-ACGAGGAAGAAA 319
|| ||||||| | || ||| | || |||| ||| |||||||||| | || |||||||||
Sbjct 257 AAGAAGAGTATGCAAG-TGTGTATTTTCAT-GAAGACACCTTCAC-ATACCAGGAAGAAA 313
Query 320 CGTTGGAGC-GTTACTGGAGAAAC-TGGTTACAGTCATCGACCAATGAACAATCTGAAAC 377
|| | |||| | | |||| | | |||||||||||||||||||||||||||||||||||
Sbjct 314 CGGTCGAGCAG-TCCTGG-GCCTCTTGGTTACAGTCATCGACCAATGAACAATCTGAAAC 371
Query 378 AGGATCACAAGAAGAGTATACAAATGCATCTTCTCATGGAGGCACCTTCATTTACGAGGA 437
|| ||||||||||||||||||||||| ||||||||||| || |||||||| || |||||
Sbjct 372 AGCATCACAAGAAGAGTATACAAATGTATCTTCTCATGAAGACACCTTCACATATGAGGA 431
Query 438 AGAAACGTTGGAGCAGTATTGGAGAAACTGGTTACAGTCATCGACAAATGAACAATTTGA 497
||||||| | |||||| | |||| |||||||||||| ||| ||| |||||||||| |||
Sbjct 432 AGAAACGCTCGAGCAGCACTGGACCAACTGGTTACAGACATTGACCAATGAACAATCTGA 491
Query 498 AACAG-AGTCACTAGAAGAGTATACAAATCCATCTTCTCATGGAGACATCTTCACTTACG 556
|| || | ||| |||||||||||||||| || |||||||| | ||| |||||| ||||
Sbjct 492 AAGAGCAC-CACAAGAAGAGTATACAAATGTATATTCTCATGAAAACACCTTCACATACG 550
Query 557 AGGAATTATTGAGCATCACTGA-CGAAACAGGAGATGAACGCACTGGTTTAAGCGAGGAA 615
||||| |||||| | ||||||| | || ||||| ||| | |||||||||||| || ||||
Sbjct 551 AGGAACTATTGAACCTCACTGAAC-AAGCAGGAAATGTAGGCACTGGTTTAACCGTGGAA 609
Query 616 GTGATTGATGAGAATCTAATAAGAAGGAAATATGAAAAGCGTAGCGACGATGAAACGAAG 675
|| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||
Sbjct 610 GTCATTGATGAGAATCTAAGAAGAAGGAAGTATGAAAAGCGTAGTGACGATGAAACGGAG 669
Query 676 AGATGTGTGATCTGTCAGCAGAAATTGAAGGACAATGAAGAAGTTTCGAAACTGGGATGT 735
| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 670 ATATGTGTGATCTGTCAGGAGAAATTGGAGGACAATGAAGAAGCTTCGAAACTGGGATGT 729
Query 736 GGGCATGACTTTCACTTCG-GATGCATCAAGAATTGGCTAATGGTCACGAACAAGTGTCC 794
||||||||||||||||||| | ||||||||| | ||||| ||||||| ||||| ||||||
Sbjct 730 GGGCATGACTTTCACTTCGAG-TGCATCAAGCAGTGGCTGATGGTCAAGAACATGTGTCC 788
Query 795 TCTTTGCAACCGAGAAGTCGTTTAA 819
||||||||| | |||||||||||||
Sbjct 789 TCTTTGCAATCAAGAAGTCGTTTAA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5