BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67130.1
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496887 jgi|Araly1|496887|fgenesh2_kg.8__2703__AT5G67130.1 2510 0.0
> Ahg496887 jgi|Araly1|496887|fgenesh2_kg.8__2703__AT5G67130.1
Length=1750
Score = 2510 bits (1359), Expect = 0.0
Identities = 1641/1770 (93%), Gaps = 48/1770 (3%)
Strand=Plus/Plus
Query 1 ATCTTCTTTACTAATCGTTTCTTCATTTTCTCTCTAGGAGCTAGGTGGGAAAAAGATTCA 60
|||||||||||||||| ||||||| ||||||||| | | | ||||||||||||||||||
Sbjct 1 ATCTTCTTTACTAATCCTTTCTTCGTTTTCTCTC-A-G-G--AGGTGGGAAAAAGATTCA 55
Query 61 ACCTTGTCTTAGAAAAAGAAAACCAAAGCTAATCTTTTTCTTTTG-TACCTCTCT-TTCA 118
||||||||| || |||||||| |||||||||||||||||||||| | ||||||| |||
Sbjct 56 ACCTTGTCTAAG-TAAAGAAAAGCAAAGCTAATCTTTTTCTTTTGCT-CCTCTCTCTTCC 113
Query 119 AGGATTAACAAAACAAATCGATGAAGCCCGGGTTTTAGTACCTAAACATCTC-TTTGTCT 177
|||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 114 AGGATTAA-TTAACAAATCGATGAAGCCCGGGTTTTAGTACCTAATCATGTCTTTTGTCT 172
Query 178 CGTCTTTG-AAAAccc-c---c--ccA-AGTAGATCCAACATCATTC--ATAtctctctc 227
||||| | ||||||| | | | | |||||||| |||||||||| || ||||||||
Sbjct 173 TGTCTTAGAAAAACCCACAGGCAACAACAGTAGATCGAACATCATTCAGATTTCTCTCTC 232
Query 228 tc--tatctctGCATAAGCTACGGAGCGATGTCGGCGTGCATCAATGGCTTATGCAGAGC 285
|| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 233 TCTTTCTCTCTGCATAAGCTAAGGAGCGATGTCGGCGTGCATCAATGGCTTATGCAGAGC 292
Query 286 CGTGACTGtctctcttcttcttcttcttctttc-t-ttctctttttcCTCAGCTTGCTCC 343
|||||| |||||||||||||||| | ||||||| | |||||||||||||||||||| ||
Sbjct 293 CGTGACAGTCTCTCTTCTTCTTC-T-TTCTTTCTTCTTCTCTTTTTCCTCAGCTTGTTCG 350
Query 344 AATGGAAATTGCCAGCTGCTGGATTCATGCTCCTCGGCTACTGATTGTGTCTCTGGTTTA 403
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 351 AATGGAAATTGCCAGCTGCTGGATTCATGCTCCTCGGCCACTGATTGTGTCCCAGGTTTA 410
Query 404 TACTGTGGAGACTGTCCTGCCGTTGGAAGAAGTAAACCCGTCTGCACAAGAGGCCAAGCC 463
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 411 TACTGTGGAGACTGTCCTGCCGTTGGAAGAAGTAAACCCGTCTGCACTAGAGGCCAAGCC 470
Query 464 ACAAGTCCAACTTCCATTATCAATGGATTGCCTTTTAACAAGTATACATGGTTGATGACT 523
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 471 ACAATTCCAACTTCCATTATCAATGGATTGCCTTTCAACAAGTATACATGGTTGATGACT 530
Query 524 CATAATGCCTTTAGCAATGCAAATGCACCACTTTTGCCAGGTGTTGAGAGGATTACATTT 583
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 531 CATAATGCCTTTAGCAATGCAAATGCACCACCGTTGCCAGGTGTTGAGAGGATTACATTT 590
Query 584 TACAATCAAGAAGATACTATTACTAATCAGCTACAAAATGGAGTTAGAGGGCTAATGCTG 643
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 591 TACAATCAAGAAGATACGATTACTAATCAGCTACAAAATGGAGTTAGAGGGCTAATGTTG 650
Query 644 GATATGTATGACTTCAACAATGATATCTGGCTTTGCCATTCGCTTCGAGGGCAATGTTTC 703
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 651 GATATGTATGACTTCAACAACGATATCTGGCTTTGCCATTCGCTTCGAGGGCAATGTTTC 710
Query 704 AACTTCACCGCTTTTCAACCTGCAATTAACATACTGAGGGAAGTTGAGGCATTTCTGAGT 763
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 711 AACTTCACCGCTTTTCAACCTGCAATTAACACACTGAGGGAAGTTGAGGCATTTCTGAGT 770
Query 764 CAAAACCCAACAGAGATTGTTACCATCATAATAGAGGATTATGTGCACAGACCTAAAGGC 823
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 771 CAGAACCCAACAGAGATTGTTACCATCATAATTGAGGACTATGTGCACAGACCTAAAGGC 830
Query 824 TTATCAACACTGTTTGCCAACGCTGGTTTGGACAAATACTGGTTCCCTGTTTCGAAAATG 883
|||||||| |||||||| ||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 831 TTATCAACTCTGTTTGCTAACGCTGGTTTGGACAAGTACTGGTTTCCTGTTTCTAAAATG 890
Query 884 CCTAGAAAGGGAGAAGATTGGCCTACTGTGACTGACATGGTGCAAGAGAATCATAGGCTC 943
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 891 CCTAGAAAAGGAGAAGATTGGCCTACTGTGACTGATATGGTGCAAGAGAATCATAGGCTC 950
Query 944 CTGGTTTTCACTTCTGTTGCTGCCAAAGAAGATGAAGAAGGCGTTGCGTATCAGTGGAGA 1003
|| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 951 CTCGTTTTCACTTCTGTCGCTGCGAAAGAAGATGAAGAAGGCGTTGCTTATCAATGGAGA 1010
Query 1004 TACATGGTTGAAAATGAATCTGGGGATCCCGGAGTGAAGCGAGGTTCTTGTCCTAACAGA 1063
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1011 TACATGGTTGAAAATGAATCTGGGGACCCCGGGGTGAAGCGAGGTTCTTGTCCTAACAGA 1070
Query 1064 AAAGAGTCTCAACCTTTAAATTCAAAAAGTTCTTCGCTATTCTTGATGAATTACTTCCCG 1123
|||||||| |||||||||||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 1071 AAAGAGTCACAACCTTTAAATTCAAAAAGCTCATCGCTTTTCTTGATGAATTATTTCCCG 1130
Query 1124 ACATATCCGGTTGAGAAAGACGCTTGCAAGGAGCACTCAGCTCCACTTGCTGAGATGGTT 1183
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1131 ACATATCCGGTTGAGAAAGACGCCTGCAAAGAGCACTCAGCTCCACTTGCTGAGATGGTT 1190
Query 1184 GGGACTTGTCTCAAGTCAGGAGGGAATAGAATGCCAAACTTTCTTGCTGTTAACTTCTAC 1243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GGGACTTGTCTAAAGTCAGGAGGGAATAGAATGCCAAACTTTCTTGCTGTTAACTTCTAC 1250
Query 1244 ATGAGAAGTGATGGAGGCGGCGTTTTCGAAATTCTGGATAGAATGAATGGACCGGTACTT 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1251 ATGAGAAGTGATGGAGGCGGCGTTTTCGAAATTCTGGATAGAATGAATGGACCAGTAGTT 1310
Query 1304 TGCGGTTGTGAAACTCTTTCTGCTTGCCAGCCAGGAGCAGCTTATGGTTCATGCAAAAAT 1363
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1311 TGCGGTTGTGAAACTCTTGCTGCTTGCCAGCCAGGAGCAGCCTATGGTTCATGCAAAAAT 1370
Query 1364 GTTACTGTACAGACAAGAACTCCAAGCATGGATTCAACGGCTGGAAGCAACTCAGGTGGA 1423
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1371 GTTACTCTACAGACAAGAACTCCAAACATGGATTCAACGGCTGGAAGCAACTCAGGTGGA 1430
Query 1424 AGCTACTCAGGTTCAGTTCAGTTCTCAAGATCTTTAGCTTCTGTGG-C---CCAACTAAA 1479
|||||||||||||||||||||||||||||||| ||||||||||| | | ||| | |||
Sbjct 1431 AGCTACTCAGGTTCAGTTCAGTTCTCAAGATCCTTAGCTTCTGTTGTCTATCCACC-AAA 1489
Query 1480 CAAC-ATTGTTGTCTTCTGCTTCTCATTGCTTCCGTTGCTGATATTTCTACTATGACACA 1538
|| | ||||||| |||||||||||||| ||| || || ||||| ||||||||||||||||
Sbjct 1490 CA-CTATTGTTGCCTTCTGCTTCTCATGGCTGCCATTCCTGATGTTTCTACTATGACACA 1548
Query 1539 ACCAATCAAACCACGTGGAGAGATTCTTAGGTTAGAGAATCTTGATCACTTCTTTAGAAC 1598
|||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1549 ACCAATCAAACCACTTGGAGAGATTATTGGGTTAGAGAATCTTGATCACTTCTTTAGAAC 1608
Query 1599 GAATGAGAGAGCCTAAGTT--G-A--CATGAATTGCCTTAGAAAGAGTTTCTGATT-TGA 1652
|||||||||| |||||||| | | |||||||| |||||||||||||||||| || |||
Sbjct 1609 GAATGAGAGATCCTAAGTTCAGGAAACATGAATTCCCTTAGAAAGAGTTTCTG-TTATGA 1667
Query 1653 TTCTTGTATTGTAGACTGCAGAGCTATAGGCAGAAATCTTGTGTATGTGTGTCTTCAGCT 1712
|||||| || |||||| ||| || ||||||||| ||||||||||||||||||||||
Sbjct 1668 TTCTTGAATGGTAGAC-GCA----TA--GGCAGAAATATTGTGTATGTGTGTCTTCAGCT 1720
Query 1713 TCTGTTGATTGTTATGCAACTtatatatat 1742
|||||||| |||||||||||||||||||||
Sbjct 1721 TCTGTTGAATGTTATGCAACTTATATATAT 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66315116545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5