BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67140.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496886 jgi|Araly1|496886|fgenesh2_kg.8__2702__AT5G67140.1 1288 0.0
> Ahg496886 jgi|Araly1|496886|fgenesh2_kg.8__2702__AT5G67140.1
Length=864
Score = 1288 bits (697), Expect = 0.0
Identities = 796/843 (94%), Gaps = 10/843 (1%)
Strand=Plus/Plus
Query 66 AAGAAGCTCTAAAATCATACAAGTCATGGATGAAGAAGCAGCGATTGATCGTTTACCATT 125
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 27 AAGAAGCTCTAAATTCATACAAGTCATGGATGAAGAAGCAGCGATTGATCGATTACCGTT 86
Query 126 AGACCTTCTTGCATATATATTTTCGTTGGCT-ACTTCTTTCACCGTTTTGGCCCAGGCAA 184
||||||||| || ||||||||||| |||| | ||||||||||||||||||| |||||||
Sbjct 87 AGACCTTCTGGCTTATATATTTTCATTGG-TCACTTCTTTCACCGTTTTGGGGCAGGCAA 145
Query 185 GTGGTGTTTGCAAGAAATGGAGAAAAGCTGTAAATCAATCGATGGCGAGAAGAGAAACTC 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 146 GTGGTGTTTGCAAGAAATGGAGAAAAGCTGTAAATCAATCGATGGCGAGAAGAGAATCTC 205
Query 245 TGAGCTTTGCTGGTTGGAAAATGGACGATGATTCCACTTCTCGTCTCGTTCATCTTGCTT 304
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 206 TGAGCTTCGCTGGTTGGAAAATGGACGATGATTCCACTTCTCGTCTTGTTCATCTTGCTT 265
Query 305 TCAACCTCAAAGAACTCGACATATCTCGAAGCAGATGGGGTTGTCATATAACTGATAATG 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 266 ACAACCTCAAAGAACTCGACATATCTCGAAGCAGATGGGGTTGTCATATAACTGATATTG 325
Query 365 GTCTTTACCAAATAGCTTCTGCAAGATGTGTATCCAATTTAAACTCTGTCTCTTTATGGG 424
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 326 GTCTTTACCAAATAGCTTCTGCAAGATGTGTTTCCAATTTAAACTCTGTTTCTTTATGGG 385
Query 425 GCATGACCGCCATTACTGATTCTGGTGTTGTTCAACTGATTTCAAGAACTTCCTCACTGC 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 386 GCATGACCGCCATTACTGATTCTGGTGTTGTTCAACTGATTTCAAGAACTTCTTCACTGC 445
Query 485 AACACCTAAACATAGGAGGAACATTTATAACCGATGAGTCTCTTTTCGCAATTGCAGAAC 544
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 446 AACACCTAAACATAGGAGGAACGTTTATAACCGATGAGTCTCTTTTCGCTATTGCAGAAC 505
Query 545 GCTGCCATCAGCTTAAGACAATCGGAATGTGGTGTTGCCGTCATGTGACAGAGAGAGGCC 604
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 506 GCTGCCATCATCTTAAGACAATTGGAATGTGGTGTTGCCGTCATGTGACAGAGAGAGGCC 565
Query 605 TTCTTGTTCTTGTAAACAAATGCAGAAAACTCGAATCCATCAACTTATGGGGAACTAGAG 664
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 566 TTCTTGTTCTTGTAAACAAATGCAGAAAACTCGAATCTATCAACTTATGGGGAACTAGAG 625
Query 665 TTCCTGTAGATTGCTTCATTGCTTTACTTACCATCAGTCCTGCTCTTCAGATCAAACCCA 724
||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 626 TTCATGTGGATTGCTTCATTGCTTTACTTACCATCAGTCCTGCACTTCAGATCAAACCCA 685
Query 725 TGGAATTGCTTCTCAATGCTCAGAATCCACCACCGTTGCTGCATGCTGTCTAGTGTTGCT 784
|||||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 686 TGGAATTGCTCCTTAATGCTCAGAATCCACCACCATTGTTGCATGCTGTCTAGTGTTGCT 745
Query 785 CATCATATT-TCTTGTTTGTTGTGTACATAGTAATTCATACAATTGAATCTGCATATATC 843
|| ||| || || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 746 CAACAT-TTGTCCTGTTTGTTGTGTACATAGTAATTCATAAAATTGAATCTGCATATATC 804
Query 844 TTATGTGTTCTC--T-CATCAATCAACAACATATATATATAAATATTCAGTAAAGTTTCT 900
||||| |||||| | | || ||||| |||||||||| || | || |||||||||||||
Sbjct 805 TTATGCGTTCTCGGTTCTTCCATCAATAACATATATAAATTA-TA--CAGTAAAGTTTCT 861
Query 901 ATT 903
|||
Sbjct 862 ATT 864
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAACTAATGATATATACAAACAA 28
||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAACTAATGATATATACAAACAA 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5