BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67150.1
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951510 jgi|Araly1|951510|scaffold_803397.1 2097 0.0
> Ahg951510 jgi|Araly1|951510|scaffold_803397.1
Length=1392
Score = 2097 bits (1135), Expect = 0.0
Identities = 1309/1394 (94%), Gaps = 7/1394 (1%)
Strand=Plus/Plus
Query 63 CATCTATCTACTCGAGAAAAGAAAATGGCAGATGAAG-TAGTAGTGATCTCTAAGAGCAT 121
|||| |||| |||||||||||||||||| || ||||| || ||||||||||||| |||||
Sbjct 3 CATC-ATCTCCTCGAGAAAAGAAAATGGGAGCTGAAGTTA-TAGTGATCTCTAATAGCAT 60
Query 122 TGTTCGACCAGAGAGCTACAACGAGGAATCGGATCGGGTTAAGATCCATCTCACTCCATG 181
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TGTTCGACCAGAGAGCTACAGCGAGGAATCGGATCGGGTTAAGATCCATCTCTCTCCATG 120
Query 182 GGATCTCTTCTTTCTTCGATCCGAATACCCACAAAGAGGTCTTCTCTTTCCTCAACCCGA 241
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGATCTCTTCTTTCTACGATCCGAATACCCACAAAGAGGTCTTCTCTTTCCTCAACCCGA 180
Query 242 CCCGGAAACCCATATAATCTCTCAGTTGAAATCATCTCTCTCTGTCGCTTTGAAGATCTT 301
||||||||||| |||||||||||| ||||||| |||||||| ||||| || ||||||||
Sbjct 181 CCCGGAAACCCTTATAATCTCTCAACTGAAATCCTCTCTCTCCGTCGCGTTAAAGATCTT 240
Query 302 CTACCCATTCGCTGGTCGTCTTGTCAAGGTCGAGAACGAAGATGCTGGAACGGCGTCGTT 361
|||||||||||||| ||||| |||||| |||||||||| || | |||||||||||||||
Sbjct 241 TTACCCATTCGCTGGCCGTCTAGTCAAGATCGAGAACGAGGACGATGGAACGGCGTCGTT 300
Query 362 TTACGTCGATTGTGATGGCTCAGGTGTCAAATTCATCCACGCTTCAGCTAAATCCGTTTC 421
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 301 TTACGTCGATTGTGATGGCTCAGGTGTCAAATTCGTCCACGCTTCAGCTAAAACTGTTTC 360
Query 422 GGTTAGTGATGTTTTAGAACCTGTTGATAGTAATGTCCCTGAGTTCTTGAATCGTTTTT- 480
||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 361 GGTGAGTGATGTTTTAGAACCTGTCGATGGTAATGTGCCTGAGTTCTTGAATCGTTTTTA 420
Query 481 TCCCGGCGAATGGTGTTAGGAGCTGTGAAGGAATCTCGGAGTCGTTAATTGCGTTTCAAG 540
| ||||||||| |||||| |||| |||||| || ||||| ||||| |||||||||||||
Sbjct 421 T-CCGGCGAATAGTGTTACAAGCTTTGAAGGGATATCGGACTCGTTGATTGCGTTTCAAG 479
Query 541 TAACGGAATTGAAAGATGGGGTTTTTATAGGGTTTGGTTATAATCATATTGTTGCAGATG 600
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TAACTGAATTGAAAGATGGAGTTTTTATAGGGTTTGGTTATAATCATATGGTTGCAGATG 539
Query 601 GATCTTCGTTTTGGAGTTTCTTCAATACTTGGTCGGAGATTTGCTTTAACGGGTTTGATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 GATCTTCGTTTTGGAGTTTCTTCAATACTTGGTCGGAGATTTGCTTTAACGGGTTTGGTT 599
Query 661 CCGATCATCGGAGAAAGTTTCCTCCTTTGCTTCTCCGTGGATGGTTTCTCGACGGTATTG 720
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct 600 CCGATCATCGGAGAAAGTTTCCTCCTCTGCTTCTCCGTGGGTGGTTTCTCGACGGGATTG 659
Query 721 AGTATCCGATTCGAATTCCGTTACCGGAGACGGAGACACCGAACCGGGTTGTTGTTACTT 780
|||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 660 AGTATCCGATTCGAATTCCGATGTCGGAGACGGAAACACCGAACCGGGTTGTTGTTACTT 719
Query 781 CATCGTTATTACAAGAGAAGATTTTTCGAGTCACGAGTAGAAACATCTCTGAGCTTAAAG 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CATCGTTAATACAAGAGAAGATTTTTCGAGTCACGAGTAGAAACATCTCTGAGCTTAAAG 779
Query 841 CGAAAGCTAACGGCGAGGTTGA-CTCCGATGATCGGAAAATATCGTCGCTTCAAGCGGTT 899
|||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 780 CGAAAGCTAACGGCGAAGTT-AGTTCCGATGATCGGAAAATCTCGTCGCTTCAAGCGGTT 838
Query 900 TCAGCGTATATGTGGCGATCGATAATCAGAAACAGTGGTCTGAATCCGGAAGAAGTGATT 959
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCAGCGTTTATGTGGGGATCGATAATCAGAAACAGTGGTCTGAATCCGGAAGAAGTGATT 898
Query 960 CATTGCAAGTTACTGGTGGATATGAGAGGAAGACTAAACCCTCCGCTTGAGAAAGAGTGT 1019
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 899 CATTGCAAGTTACTGATGGATATGAGACGAAGACTAAACCCTCCGCTTGAGAAAGAGTGT 958
Query 1020 TTCGGTAACGTGGTCGGATTCGCGACGGTGACGACTACTGTGGCGGAGATGCTTCACAAT 1079
||||| || |||| |||||||| ||||||||||| || || ||||||||||| |||||
Sbjct 959 TTCGGGAATATGGTTGGATTCGCCACGGTGACGACCACGGTCGCGGAGATGCTAAACAAT 1018
Query 1080 GGGCTTGGTTGGGCTGCATTGCAAATAAACAAAACTGTTGGGTCACAAACGAATGAAGAG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGGCTTGGTTGGGCTGCATTGCAAATAAACAAAACTGTTGGGTCACAAACGAATGAAGAG 1078
Query 1140 TTTAGAGAGTTTGCTGAGAATTGGGTGAAGAAACCGAGTATATTGAATGCTAAGGCTTTT 1199
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1079 TTTAGAGAGTTTGCTGAGAATTGGGTGAAGAAACCGAGTATACTGAATGCTAAGGCTTTT 1138
Query 1200 AGTAATTCTATAACAATTGCTAGCTCTCCTCGGTTCAATGTGTATGGAAACGATTTCGGT 1259
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1139 AGTAATTGTATAACAATTGCTAGCTCTCCTCGGTTCAATGTGTATGGAAACGATTTTGGT 1198
Query 1260 TGGGGTAAACCAATAGCGGTTCGAGCTGGACCGGGAAATACCACCGATGGTAAACTCATT 1319
||||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1199 TGGGGTAAACCGATTGCGGTTCGAGCTGGACCGGGAAATACTACCAATGGTAAACTCATT 1258
Query 1320 GCTTATCCGGGGATCGAAGAAGGAAACATCGAGTTTCAAACGTGTTTATCGTCTAGTGTT 1379
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCTTATCCGGGGATTGAAGAAGGTAACATCGAGTTTCAAACGTGTTTATCGTCTAGTGTT 1318
Query 1380 TTGGAAAAATTATCGACTGATGAAGAGTTTTTGAAGCATGTATGTGTTGTATAAGTAAAA 1439
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTGGAGAAATTATCGACTGATGCAGAGTTTTTGAAGCATGTATGTGTTGTATAAGTAAAA 1378
Query 1440 TCAACCAAATCAAA 1453
||| ||||||||||
Sbjct 1379 TCATCCAAATCAAA 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57744811420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5