BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67160.1
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496884 jgi|Araly1|496884|fgenesh2_kg.8__2700__AT5G67160.1 1956 0.0
> Ahg496884 jgi|Araly1|496884|fgenesh2_kg.8__2700__AT5G67160.1
Length=1351
Score = 1956 bits (1059), Expect = 0.0
Identities = 1263/1361 (93%), Gaps = 16/1361 (1%)
Strand=Plus/Plus
Query 5 CAAAACCTCACTGATTAAGAAAAAGGTAAAACGATGGAAGAAGAATTGGTGGTAATCTCG 64
||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2 CAAAACCTCACTGATTAAG-AAAAGGTAAAACGATGGAAGAAGAACTGGTGGTGATCTCG 60
Query 65 AAGAGCATAGTTAA-TCCCAGAAGCCTTAAGAAACCGACTTCTGTGAAGAAGATTCAGCT 123
||||| || | ||| |||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 61 AAGAGTATCG-TAACTCCCAGAAACGTTAAGAAACCGACTTCTGTGAAGAAGATTCATCT 119
Query 124 GACTCCATGGGATCTCTCTCGCCTTCGTTTTGGTTATCTTCAAAGAGGTCTTCTCTTTCA 183
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 120 GACTCCATGGGATCTCTCTCGCCTTCGCTTTGGTTATCTTCAAAGAGGTCTTGTCTTTCC 179
Query 184 CAAAATTGAAGTCAAACAATTACAAGCTTCACTCTCTGTTGCACTTGATCGTTTCTATCC 243
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAAACCTGATCCCAAACAATTACAAGCTTCACTCTCTGTTGCACTTGATCGTTTCTATCC 239
Query 244 TTTAGCTGGTCGTCTTGTGAAGCTAAAGAACGACGACGATACTGTCTCGTTTTTCATCAG 303
||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 240 TTTAGCTGGTCGTCTAGTGAAGCTAGCGAACGACGACGACACTGTCTCGTTTTTCATCAG 299
Query 304 CTGCGATGGTTCAGGTGTGGAGTTTGTTCACGC-AGTGGCTAAAAACATCGAGCTCAGTG 362
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 300 CTGCGATGGTTCAGGTGTGGAGTTTGTTCACGCCA-TGGCTAAAAACATCGAGCTCAGTG 358
Query 363 ATGTCCTTGAGTTATCCGGTTCTGTCCCCGGGTTTTTCGCTTCCTTTTTCCCTGCAACGG 422
|||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||| |
Sbjct 359 ATGTCCTTCAGTTATCCAGTTCTGTCCCCGGGGTCTTCGCTTCCTTTTTCCCTGCAACCG 418
Query 423 GGATCAAGAACTACCACGGTGTCTCAAGATCTCTACTTATGGTTCAAGTGACAGAGATGA 482
|||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 419 GGATCAAGAACTACCACGGTGTCTCAAGATCTTTACTAATGGTTCAAGTGACCGAGATGA 478
Query 483 AGGACGGGGTTTTCATCGGTTTTGGTTACAACTCTACCGTGGCTGATGCCACTTCAATCT 542
|||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 479 AGGACGGGATTTTCATCGGTTTCGGTTATAACTCTACCGTGGCTGACGCCACTTCAATCT 538
Query 543 GGAAGTTCATCAATGCATGGTCAGAGATTTGCTCGAAAGATTCTTCAGGATCCCAAACTT 602
|||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 539 GGAAGTTCATTAATGCATGGTCAGAGATTTGCTCGAAAGATTCG---GGATCCGAAACCT 595
Query 603 TCCAACGTCGTCTTCACCTTAAAGGTTGGTTCTTTGACGAG-ATTGATTATCCAATCCAT 661
|||||||| |||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 596 TCCAACGTTGTCTTCACCTTAAAGGTTGGTTCTTTGAT-AGGATAGATTATCCAATCCAT 654
Query 662 ATTCCAGACCCTGAAACAAAACCAACTAGTTATGTAACAACACCAACCAATCTACAAGAG 721
||||||||||||| ||||||||||||||| ||||||||| || | ||||||||||||||
Sbjct 655 ATTCCAGACCCTGTAACAAAACCAACTAGCTATGTAACATCA--A-CCAATCTACAAGAG 711
Query 722 AAGATGTTTCATGTTACAAAAGAGAATGTTTTGAAACTTGACGCTAAAGCCAACGACGAG 781
|||||||||||| | ||||| || |||||||||||||| || ||||||||||||||||||
Sbjct 712 AAGATGTTTCATATCACAAAGGAAAATGTTTTGAAACTGGAAGCTAAAGCCAACGACGAG 771
Query 782 GCTGATCAAAAGATCTCTTCTATTCAAGCGGTGTTAGCATATATATGGCGTTCAATGGTT 841
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 772 GCTGATCAAAAGATCTCGTCTATCCAAGCGGTGTTGGCATATATATGGCGTTCAATGGTT 831
Query 842 AAACACAGTGGCATGAGCCGAGAGGAAGAGACTCATTGCAGGTTACCTATAAACATGAGG 901
||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct 832 AAACACAGTGGCATGAGCCAAGAAGAAGAGACTCATTGCAGGATACCTATAAACATGAGG 891
Query 902 CAACGGCTAAATCCGCCACTAGAAGAAGAGTGTTTTGGGAATGTAAGCCAAACCGGGATA 961
||| | || ||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 892 CAAAGACTCAATCCACCGCTAGAAGAGGAGTGTTTTGGGAATGTAAGCCAAACCGGGATA 951
Query 962 GCTACGGTCACGGTTGGAGAGCTGCTGGACCATGGACTAGGCTGGGCTGCAATGCAAATC 1021
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 952 GCCACGGTCACGGTTGGGGAGCTGCTGGACCATGGACTAGGCTGGGCTGCTATGCAAATC 1011
Query 1022 AACAACATGGAGCTGTCACAAACTGATGAAAAAGCCAAAGCATTTGCAGAGAATTGGGTG 1081
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1012 AACAACATGGAGCTGTCACAAACTGATGAAAAAGCCAAAGAATTTGCAGAGAATTGGGTG 1071
Query 1082 AAAAATATCAAGATTCCGGTTTCTGTTGGTAGCAAAGATTTAGTTGTCACAAACTCTCAC 1141
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1072 AAAAATATCAAGATTCCGGTTTCTGTCGGTAGCAAAGATTTAGTTGTCACAAACTCTCAC 1131
Query 1142 CGGTTCGATGTGTACTGTAATGATTTCGGTTGGGGTAAACCGATAGCTGCAAGAGCTGGA 1201
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1132 CGGTTCGATGTGTATTGCAATGATTTCGGTTGGGGTAAACCGATTGCTGCAAGAGCTGGA 1191
Query 1202 CCACCGTATCTCAATGGAAGACTCGTTGTTTTCAAAGGAATTGGAG-AAGCAAGTCTTGA 1260
|||||||||||||||||||| ||||| ||||||| |||||| | | ||| |||||||||
Sbjct 1192 CCACCGTATCTCAATGGAAGGCTCGTCGTTTTCAGAGGAATCG-ATCAAGAAAGTCTTGA 1250
Query 1261 TTTTCAGGCTTGTTTACTGCCTCAGGTAGTGGAAAAATTAGTCAAAGATGCTGAATTTAA 1320
|||||||||||||||||||||||| ||||||||||||||| | || |||| |||||||||
Sbjct 1251 TTTTCAGGCTTGTTTACTGCCTCAAGTAGTGGAAAAATTATTGAAGGATGTTGAATTTAA 1310
Query 1321 CGAATATGTAAGCATTGTATGAGA-TGATTTGGTTTAGCAA 1360
||| |||||| ||||||||||| | |||||||||| |||||
Sbjct 1311 CGAGTATGTATGCATTGTATGATAATGATTTGGTTCAGCAA 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53440613735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5