BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67170.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496882 jgi|Araly1|496882|fgenesh2_kg.8__2698__AT5G67170.2 1838 0.0
> Ahg496882 jgi|Araly1|496882|fgenesh2_kg.8__2698__AT5G67170.2
Length=1358
Score = 1838 bits (995), Expect = 0.0
Identities = 1233/1343 (92%), Gaps = 35/1343 (3%)
Strand=Plus/Plus
Query 79 TTTGATAATGGCGAAAACTAAACAACAGAAATCTAAGCCTAAGAAACAACCGCATCAGAA 138
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 42 TTTGATAATGGCGAAAACTAAGCAACAGAAATCTAAGCCTAAGAAACAACCGCATC---A 98
Query 139 GCAAGGAAAGGATTGTGATCTCTCTCAATTTCGTGCTCAGCTTGACGCTTTAGGGCTTAA 198
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 99 GCAAGGAAAGGATTGTGATCTCTCTCAGTTTCGTGCTCAGCTTGACGCTTTAGGGCTTAA 158
Query 199 GATTATCCAAGTGACTGCTGACGGTAATTGTTTCTTCAGAGCAATTGCTGATCAATTAGA 258
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 159 GATTATCCAAGTGACTGCAGACGGTAATTGTTTCTTCAGAGCAATTGCTGATCAATTGGA 218
Query 259 AGGCAATGAGGATGAACACAACAAGTACCGTAACATGATTGTACTTTATATAGTGAAAAA 318
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 219 AGGCAATGAGGATGAACACAACAAGTACCGTAACATGGTTGTACAATATATAGTGAAAAA 278
Query 319 TCGTGAAATGTTCGAGCCTTTTATCGAAGATGATGTTCCTTTTGAGGATTACTGTAAAAC 378
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 279 TCGTGAAATGTTCGAGCCTTTTATCGAAGATGATGTTCCGTTTGAGGATTACTGTAAAAC 338
Query 379 CATGGACGATGATGGAACTTGGGCTGGGAATATGGAATTACAAGCAGCTTCTCTTGTCAC 438
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 339 CATGGATGATGATGGCACTTGGGCTGGGAATATGGAATTACAGGCAGCTTCTCTTGTCAC 398
Query 439 TCGCAGTAATATATGTATTCACAGGAACATGTCACCGCGTTGGTATATACGCAACTTTGA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 399 ACGCAGTAATATATGTATTCACAGGAACATGTCACCGCGTTGGTATATACGCAATTTTGA 458
Query 499 AGATACGCGAACCCGCATGATCCATCTGTCTTACCATGATGGGGAACACTACAACAGTGT 558
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 459 AGATACACGAACCCGCATGATCCATCTGTCTTACCACGATGGGGAACACTACAACAGTGT 518
Query 559 GCGTTCCAAGGAAGATGCTTGTGGAGGACCAGCCAGGCCTGTTGTAATAGAGGCTGATGC 618
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCGTTCAAAGGAAGATGCTTGTGGAGGACCAGCCAGGCCTGTTGTAATAGAGGCTGATGC 578
Query 619 TAAAGTTTCAGCAGCATCTAAACAAGCGAAAGCTACAGAGAGCAAGTCCAAAAATAAAGC 678
||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct 579 TAAAGTTTCAGCAGCATCTAAACAAGCCAAAGCCACGGAGAGCAAGTCCAAAAACAAAGC 638
Query 679 TGATAAGTGTCAT-GTGAATGCTGG-AGCTATCAAAGTTGTCATGTCTGGTAGTTGTTGT 736
|||||||||| || ||| ||||||| | |||||||||| |||||||||||||||||||||
Sbjct 639 TGATAAGTGT-ATTGTGGATGCTGGGA-CTATCAAAGTAGTCATGTCTGGTAGTTGTTGT 696
Query 737 GACAATACTGAGAAAGCTGAACAGGTTCTATTACAAGTTAATGGTGATGTGGATGCTGCT 796
| |||| ||||||||||||||||||||||| ||||||| || |||||||| ||||||||
Sbjct 697 GGCAATGCTGAGAAAGCTGAACAGGTTCTAGTACAAGTAAACGGTGATGTAGATGCTGCA 756
Query 797 ATAGAATTCCTGATAGCAGACCAAGGAATGGAGTCTTTGACTGAAAATGATACAGAAACC 856
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 757 ATAGAATTCCTGATAGCAGAGCAAGGAATGGAGTCTTTGACTGAAAATGATTCAGAAATC 816
Query 857 GCCTCTGCATCAGATACCATCAAC-CCAAAGCATGCAAGTGATAGTCCAATGGAAAACAC 915
|| |||||| |||||| || ||| |||| | | |||||||||||| || |||||| |||
Sbjct 817 GCTTCTGCAGCAGATAGCA-CAAATCCAATGGAAGCAAGTGATAGTTCAGTGGAAAGCAC 875
Query 916 CGAGCAAGCCAGAGAAGAATTGA-TAGAGGAGGAATCAGCTAGCGGCAATAACAGTGAAA 974
||||||| ||| ||||||||||| | ||| |||||||||||||| ||| ||| | |||||
Sbjct 876 CGAGCAATCCAAAGAAGAATTGAAT-GAGAAGGAATCAGCTAGCTGCACTAATAATGAAA 934
Query 975 CAGTCCAAGCCAAGTGCAC-TACACAGACCGATGATAAGAAGATCCCAAGGAATAAAACA 1033
||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 935 CAGTCCATGCCAAGTGCAGAT-CACAGACCGATGATAAGAAGATCCCAAGGAATAAAACA 993
Query 1034 TGTCCATGTGGTTCAAAGAAGAAATACAAGTCCTGCTGTGGAACAGCAACTGGGAGATCC 1093
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 994 TGTCCATGTGGTTCAAAGAAGAAATACAAGTCCTGTTGTGGAACAGCAGCTGGGAGATCC 1053
Query 1094 TCTGTAAAACTGTTAGTGAGCCAAACAATGGAGTCGAAGAAGGGGAGAAAGAATTTGAGA 1153
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1054 TCTGTAAAACTGTTAGTGAGCCAAACAACGGAGTCGAAGAAGGGGAGAAAGAATTTGAGA 1113
Query 1154 AGAGGAACATCGAATGAAGTTGAAGCAAATGCACCAGATGTTGGTGCTCTTTGTATATAA 1213
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1114 AGAGGAACATCGAATGAAGTTGAAGCAAATGTACCAGATGTTGGTGCTCTTTGTATATAA 1173
Query 1214 TTAAGTCTCAC-TCACTCAAGGCGAAGACATAA-ATTTAGTATGAACTTG-GAGTTAGGA 1270
| || | |||| | || | || || || ||| |||||||| || |||||||||
Sbjct 1174 T-AATTTTCACATAACAGATTGCTCAGGTATGTGATT-AGTATGAA-TTCCGAGTTAGGA 1230
Query 1271 TCACTCGCGAGTATACCTTTTTTGTTGTCTGATTAAATTAACAGAAAGaaaaaaaCTTGT 1330
||||||| || ||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 1231 TCACTCGGGAATATACCTTTTT-GTTGTCTGATTAGATTAACAGAAAGAAAAATACT--- 1286
Query 1331 TATACCGTACTCAAGAACATATATGTATTACAGAGCCCAAAAATAGCTCGAGAA-TAACT 1389
| | | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1287 ----C-G-A-----GAACATATATGTATTACAGAGCCCAAAAATAGCTCGAGAAATAACT 1335
Query 1390 CAAATTCATTAAAGCATAACTTG 1412
||||||| |||||||||| ||||
Sbjct 1336 CAAATTCTTTAAAGCATAGCTTG 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5