BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67190.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951503 jgi|Araly1|951503|scaffold_803390.1 854 0.0
> Ahg951503 jgi|Araly1|951503|scaffold_803390.1
Length=601
Score = 854 bits (462), Expect = 0.0
Identities = 530/562 (94%), Gaps = 8/562 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGCGGCGGAGTTGCTGACGTGGCTGTCCCCGGTACGAGGAAGAGAGACAGACCT 60
||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct 21 ATGGACGGCGGCGGAGTAGCTGACGTGGCAGTCGCCGGTACGAGGAAGAGAGAGAGACCT 80
Query 61 TACAAAGGAATTAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATTCGTGAGCCTAAC 120
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 81 TACAAAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTCGCGGAGATTCGAGAGCCAAAC 140
Query 121 AAGCGCTCTAGGTTATGGCTTGGCTCTTACTCTACTCCCGAGGCGGCGGCGCGAGCTTAC 180
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 141 AAACGGTCTAGGTTATGGCTTGGCTCTTACTCTACTCCGGAGGCGGCGGCGCGAGCTTAC 200
Query 181 GACACGGCGGTTTTCTATCTTAGAGGACCTACGGCGAGGCTTAACTTCCCTGAGCTTCTT 240
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 201 GACACGGCCGTTTTCTATCTTAGAGGACCTACGGCGAGACTTAACTTCCCTGAGCTTCTT 260
Query 241 CCTGGGGAGAAATTCTCCGACGAGGATATGTCGGCTGCGACCATCAGGAAGAAAGCCACG 300
||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||| |||
Sbjct 261 CCTGGAGAGAAATTCTCCGATGAGGATATGTCGGCTGCGACGATCAGGAAAAAAGCGACG 320
Query 301 GAGGTCGGTGCTCAGGTTGATGCTTTGGGCACGGCGGTGCAAAATAACCGCCACCGTGTT 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 321 GAGGTCGGTGCTCAGGTTGATGCTTTAGGCACGGCGGTGCAAAATAACCGCCACCGTGTT 380
Query 361 TTTGGTCAGAATCGAGATAGTGATG-TGGATAATAAGAATTTTCATCGGAATTATCAAAA 419
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 381 TTTGGACAGAATCGAGATAGTGATGAT-GATAATAAGAATTTTCATCGGAATTATCAAAA 439
Query 420 CGGTGA--ACG-agaagaagaagaaga--a-gaTGAGGATGACAAGAGATTGAGGAGTGG 473
|||||| | | ||||||||||||||| | ||||| |||||||||||||||| ||||||
Sbjct 440 CGGTGAGCAAGAAGAAGAAGAAGAAGATGAGGATGACGATGACAAGAGATTGAAGAGTGG 499
Query 474 CGGCCGGTTATTGGATCGGGTTGACTTGAATAAATTACCCGACCCGGAAAGCTCCGATGA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 CGGCCGGTTATTGGATCGGGTTGACTTGAATAAATTACCCGACCCGGAAAGCTCCGATGA 559
Query 534 AGAATGGGAAAGCAAACATTAA 555
||||||||||||||||||||||
Sbjct 560 AGAATGGGAAAGCAAACATTAA 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5